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M. Miya · SciRah

Researcher profile · Semantic Scholar

M. Miya

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M. Miya — researcher profile on SciRah

h-index: 75
Works: 200
Citations: 18K

Most-cited papers

MiFish, a set of universal PCR primers for metabarcoding environmental DNA from fishes: detection of more than 230 subtropical marine species
M. Miya, Yukuto Sato, Tsukasa Fukunaga, T. Sado +8 more
2015Royal Society Open Science1,340 citations Open access
Semantic Scholar
MitoFish and MitoAnnotator: A Mitochondrial Genome Database of Fish with an Accurate and Automatic Annotation Pipeline
W. Iwasaki, Tsukasa Fukunaga, Ryota Isagozawa, Koichiro Yamada +7 more
2013Molecular biology and evolution831 citations Open access
Semantic Scholar
Phylogenetic classification of bony fishes
R. Betancur-R, E. Wiley, G. Arratia, A. Acero +4 more
2017BMC Evolutionary Biology830 citations Open access
Semantic Scholar
Environmental DNA metabarcoding reveals local fish communities in a species-rich coastal sea
Satoshi Yamamoto, R. Masuda, Yukuto Sato, T. Sado +4 more
2017Scientific Reports424 citations Open access
Semantic Scholar
Phylogeny and polyploidy: resolving the classification of cyprinine fishes (Teleostei: Cypriniformes).
Lei Yang, T. Sado, M. V. Hirt, Emmanuel Pasco-Viel +9 more
2015Molecular Phylogenetics and Evolution286 citations
Semantic Scholar
Environmental DNA as a ‘Snapshot’ of Fish Distribution: A Case Study of Japanese Jack Mackerel in Maizuru Bay, Sea of Japan
Satoshi Yamamoto, Kenji Minami, Keiichi Fukaya, Kohji Takahashi +21 more
2016PLoS ONE271 citations Open access
Semantic Scholar
MitoFish and MiFish Pipeline: A Mitochondrial Genome Database of Fish with an Analysis Pipeline for Environmental DNA Metabarcoding
Yukuto Sato, M. Miya, Tsukasa Fukunaga, T. Sado +1 more
2018Molecular biology and evolution264 citations Open access
Semantic Scholar
Evolutionary origin and phylogeny of the modern holocephalans (Chondrichthyes: Chimaeriformes): a mitogenomic perspective.
Jun Inoue, M. Miya, K. Lam, Boon-Hui Tay +4 more
2010Molecular biology and evolution230 citations Open access
Semantic Scholar
MiFish metabarcoding: a high-throughput approach for simultaneous detection of multiple fish species from environmental DNA and other samples
M. Miya, Ryo O. Gotoh, T. Sado
2020Fisheries Science225 citations Open access
Semantic Scholar
Environmental DNA Metabarcoding: A Novel Method for Biodiversity Monitoring of Marine Fish Communities.
M. Miya
2021Annual Review of Marine Science213 citations Open access
Semantic Scholar
Evolutionary history of Otophysi (Teleostei), a major clade of the modern freshwater fishes: Pangaean origin and Mesozoic radiation
Masanori Nakatani, M. Miya, K. Mabuchi, K. Saitoh +1 more
2011BMC Evolutionary Biology211 citations Open access
Semantic Scholar
Environmental DNA enables detection of terrestrial mammals from forest pond water
Masayuki Ushio, Hisato Fukuda, Toshiki Inoue, Makoto Kobayashi +11 more
2016bioRxiv203 citations Open access
Semantic Scholar
Quantitative monitoring of multispecies fish environmental DNA using high-throughput sequencing
Masayuki Ushio, Hiroaki Murakami, R. Masuda, T. Sado +5 more
2017bioRxiv200 citations Open access
Semantic Scholar
An illustrated manual for environmental DNA research: Water sampling guidelines and experimental protocols
T. Minamoto, M. Miya, T. Sado, S. Seino +11 more
2020193 citations Open access
Semantic Scholar
Body plan convergence in the evolution of skates and rays (Chondrichthyes: Batoidea).
Neil C. Aschliman, M. Nishida, M. Miya, Jun Inoue +2 more
2012Molecular Phylogenetics and Evolution186 citations
Semantic Scholar
Evolutionary Origin of the Scombridae (Tunas and Mackerels): Members of a Paleogene Adaptive Radiation with 14 Other Pelagic Fish Families
M. Miya, M. Friedman, T. Satoh, H. Takeshima +10 more
2013PLoS ONE173 citations Open access
Semantic Scholar
Deep-ocean origin of the freshwater eels
Jun Inoue, M. Miya, Michael J. Miller, T. Sado +6 more
2010Biology Letters166 citations Open access
Semantic Scholar
MitoFish, MitoAnnotator, and MiFish Pipeline: Updates in 10 Years
Tao Zhu, Yukuto Sato, T. Sado, M. Miya +1 more
2023Molecular biology and evolution158 citations Open access
Semantic Scholar
Sedimentary eDNA provides different information on timescale and fish species composition compared with aqueous eDNA
Masayuki K. Sakata, Satoshi Yamamoto, Ryo O. Gotoh, M. Miya +2 more
2020Environmental DNA145 citations Open access
Semantic Scholar
Use of a Filter Cartridge for Filtration of Water Samples and Extraction of Environmental DNA.
M. Miya, T. Minamoto, H. Yamanaka, S. Oka +4 more
2016Journal of Visualized Experiments133 citations Open access
Semantic Scholar
Phylogeny and biogeography of highly diverged freshwater fish species (Leuciscinae, Cyprinidae, Teleostei) inferred from mitochondrial genome analysis.
Junichi M Imoto, K. Saitoh, Takeshi Sasaki, Takahiro Yonezawa +5 more
2013Gene113 citations
Semantic Scholar
Demonstration of the potential of environmental DNA as a tool for the detection of avian species
Masayuki Ushio, K. Murata, T. Sado, I. Nishiumi +3 more
2017bioRxiv107 citations Open access
Semantic Scholar
Evaluation of detection probabilities at the water-filtering and initial PCR steps in environmental DNA metabarcoding using a multispecies site occupancy model
H. Doi, Keiichi Fukaya, S. Oka, Keiichi Sato +2 more
2019Scientific Reports103 citations Open access
Semantic Scholar
Comparing local‐ and regional‐scale estimations of the diversity of stream fish using eDNA metabarcoding and conventional observation methods
Hikaru Nakagawa, Satoshi Yamamoto, Yukuto Sato, T. Sado +2 more
2018102 citations Open access
Semantic Scholar
Evidence from mitochondrial genomics supports the lower Mesozoic of South Asia as the time and place of basal divergence of cypriniform fishes (Actinopterygii: Ostariophysi)
K. Saitoh, T. Sado, Michael H. Doosey, H. Bart +4 more
2011100 citations Open access
Semantic Scholar
The mitogenomic contributions to molecular phylogenetics and evolution of fishes: a 15-year retrospect
M. Miya, M. Nishida
2015Ichthyological Research85 citations Open access
Semantic Scholar
Comparable Ages for the Independent Origins of Electrogenesis in African and South American Weakly Electric Fishes
S. Lavoué, M. Miya, Matthew E. Arnegard, J. Sullivan +2 more
2012PLoS ONE84 citations Open access
Semantic Scholar
Mitogenomic Evidence for an Indo-West Pacific Origin of the Clupeoidei (Teleostei: Clupeiformes)
S. Lavoué, M. Miya, Prachya Musikasinthorn, Wei-Jen Chen +1 more
2013PLoS ONE82 citations Open access
Semantic Scholar
Environmental DNA metabarcoding for biodiversity monitoring of a highly diverse tropical fish community in a coral reef lagoon: Estimation of species richness and detection of habitat segregation
S. Oka, H. Doi, K. Miyamoto, Nozomi Hanahara +2 more
202080 citations Open access
Semantic Scholar
Multiple Invasions into Freshwater by Pufferfishes (Teleostei: Tetraodontidae): A Mitogenomic Perspective
Y. Yamanoue, M. Miya, H. Doi, K. Mabuchi +2 more
2011PLoS ONE79 citations Open access
Semantic Scholar
Phylogeny of the Elopomorpha (Teleostei): evidence from six nuclear and mitochondrial markers.
Jhen-Nien Chen, J. A. López, S. Lavoué, M. Miya +1 more
2014Molecular Phylogenetics and Evolution75 citations
Semantic Scholar
A ‘living fossil’ eel (Anguilliformes: Protanguillidae, fam. nov.) from an undersea cave in Palau
G. Johnson, H. Ida, Jiro Sakaue, T. Sado +2 more
2011Proceedings of the Royal Society of London. Biological Sciences72 citations Open access
Semantic Scholar
Tropical-forest mammals as detected by environmental DNA at natural saltlicks in Borneo
T. Ishige, M. Miya, Masayuki Ushio, T. Sado +5 more
201771 citations Open access
Semantic Scholar
Evaluating intraspecific genetic diversity using environmental DNA and denoising approach: A case study using tank water
Satsuki Tsuji, M. Miya, Masayuki Ushio, Hirotoshi Sato +2 more
2019Environmental DNA66 citations Open access
Semantic Scholar
Phylogenetic relationships of Acheilognathidae (Cypriniformes: Cyprinoidea) as revealed from evidence of both nuclear and mitochondrial gene sequence variation: evidence for necessary taxonomic revision in the family and the identification of cryptic species.
Chia-Hao Chang, Fan Li, Kwang-Tsao Shao, Yeong-Shin Lin +14 more
2014Molecular Phylogenetics and Evolution66 citations
Semantic Scholar
Remarkable morphological stasis in an extant vertebrate despite tens of millions of years of divergence
S. Lavoué, M. Miya, Matthew E. Arnegard, P. McIntyre +2 more
2011Proceedings of the Royal Society of London. Biological Sciences66 citations Open access
Semantic Scholar
Development of a new set of PCR primers for eDNA metabarcoding decapod crustaceans
T. Komai, Ryo O. Gotoh, T. Sado, M. Miya
2019Metabarcoding and Metagenomics63 citations Open access
Semantic Scholar
Mitogenomic sequences and evidence from unique gene rearrangements corroborate evolutionary relationships of myctophiformes (Neoteleostei)
J. Poulsen, I. Byrkjedal, E. Willassen, D. Rees +5 more
2013BMC Evolutionary Biology63 citations Open access
Semantic Scholar
Determining an effective sampling method for eDNA metabarcoding: a case study for fish biodiversity monitoring in a small, natural river
Masayuki K. Sakata, Takeshi Watanabe, Nobutaka Maki, K. Ikeda +6 more
2020Limnology61 citations
Semantic Scholar
Pike and salmon as sister taxa: detailed intraclade resolution and divergence time estimation of Esociformes + Salmoniformes based on whole mitochondrial genome sequences.
Matthew A. Campbell, J. A. López, T. Sado, M. Miya
2013Gene61 citations
Semantic Scholar
Effects of sampling seasons and locations on fish environmental DNA metabarcoding in dam reservoirs
Kana Hayami, Masayuki K. Sakata, Takashi Inagawa, Jiro Okitsu +9 more
2020Ecology and Evolution56 citations Open access
Semantic Scholar
Evaluation of fish biodiversity in estuaries using environmental DNA metabarcoding
Hyojin Ahn, M. Kume, Y. Terashima, F. Ye +4 more
2020PLoS ONE48 citations Open access
Semantic Scholar
Composition of Glycosaminoglycans in Elasmobranchs including Several Deep-Sea Sharks: Identification of Chondroitin/Dermatan Sulfate from the Dried Fins of Isurus oxyrinchus and Prionace glauca
Kyohei Higashi, Yoshiki Takeuchi, Ann Mukuno, H. Tomitori +3 more
2015PLoS ONE48 citations Open access
Semantic Scholar
Optimization of environmental DNA extraction and amplification methods for metabarcoding of deep-sea fish
M. Kawato, T. Yoshida, M. Miya, Shinji Tsuchida +5 more
2021MethodsX45 citations Open access
Semantic Scholar
A phylogenomic framework for pelagiarian fishes (Acanthomorpha: Percomorpha) highlights mosaic radiation in the open ocean
M. Friedman, Kara L. Feilich, H. Beckett, M. Alfaro +5 more
2019Proceedings of the Royal Society B44 citations Open access
Semantic Scholar
Environmental DNA analysis shows high potential as a tool for estimating intraspecific genetic diversity in a wild fish population
Satsuki Tsuji, A. Maruyama, M. Miya, Masayuki Ushio +3 more
2019bioRxiv44 citations Open access
Semantic Scholar
Mitochondrial genomic investigation of flatfish monophyly.
M. Campbell, J. A. López, T. Satoh, Wei-Jen Chen +1 more
2014Gene42 citations
Semantic Scholar
Phylogenetic relationships of catostomid fishes (Actinopterygii: Cypriniformes) based on mitochondrial ND4/ND5 gene sequences.
Michael H. Doosey, H. Bart, K. Saitoh, M. Miya
2010Molecular Phylogenetics and Evolution41 citations
Semantic Scholar
Mitochondrial phylogenomics of anchovies (family Engraulidae) and recurrent origins of pronounced miniaturization in the order Clupeiformes.
S. Lavoué, M. Miya, M. Nishida
2010Molecular Phylogenetics and Evolution38 citations
Semantic Scholar
Limits and phylogenetic relationships of East Asian fishes in the subfamily Oxygastrinae (Teleostei: Cypriniformes: Cyprinidae).
Kevin L. Tang, Mary K. Agnew, M. V. Hirt, D. Lumbantobing +12 more
2013Zootaxa37 citations
Semantic Scholar

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