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J. Stinchcombe · SciRah

Researcher profile · Semantic Scholar

J. Stinchcombe

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J. Stinchcombe — researcher profile on SciRah

h-index: 51
Works: 179
Citations: 11K

Most-cited papers

One thousand plant transcriptomes and the phylogenomics of green plants
J. Leebens-Mack, M. Barker, E. Carpenter, M. Deyholos +190 more
2019Nature1,374 citations Open access
Semantic Scholar
EXPLAINING MUTUALISM VARIATION: A NEW EVOLUTIONARY PARADOX?
Katy D. Heath, J. Stinchcombe
2014Evolution; international journal of organic evolution153 citations Open access
Semantic Scholar
Temporal patterns of damage and decay kinetics of DNA retrieved from plant herbarium specimens
Clemens L. Weiß, V. Schuenemann, Jane Devos, Gautam Shirsekar +5 more
2015bioRxiv121 citations Open access
Semantic Scholar
Multiple modes of convergent adaptation in the spread of glyphosate-resistant Amaranthus tuberculatus
Julia M Kreiner, Darci A. Giacomini, Felix Bemm, Bridgit Waithaka +8 more
2018Proceedings of the National Academy of Sciences of the United States of America111 citations Open access
Semantic Scholar
What can genome-wide association studies tell us about the evolutionary forces maintaining genetic variation for quantitative traits?
Emily B. Josephs, J. Stinchcombe, S. Wright
2017New Phytologist108 citations Open access
Semantic Scholar
Association mapping reveals the role of purifying selection in the maintenance of genomic variation in gene expression
Emily B. Josephs, Young Wha Lee, J. Stinchcombe, S. Wright
2015Proceedings of the National Academy of Sciences of the United States of America106 citations Open access
Semantic Scholar
Population Genomics of Herbicide Resistance: Adaptation via Evolutionary Rescue.
Julia M Kreiner, J. Stinchcombe, S. Wright
2018Annual Review of Plant Biology100 citations
Semantic Scholar
Explaining the apparent paradox of persistent selection for early flowering.
Emily J. Austen, L. Rowe, J. Stinchcombe, J. Forrest
2017New Phytologist96 citations
Semantic Scholar
Divergent sorting of a balanced ancestral polymorphism underlies the establishment of gene-flow barriers in Capsella
A. Sicard, C. Kappel, Emily B. Josephs, Young Wha Lee +4 more
2015Nature Communications84 citations Open access
Semantic Scholar
Rapid weed adaptation and range expansion in response to agriculture over the past two centuries
Julia M Kreiner, Sergio M. Latorre, H. Burbano, J. Stinchcombe +3 more
2022Science65 citations Open access
Semantic Scholar
Multiple mutualist effects on genomewide expression in the tripartite association between Medicago truncatula, nitrogen‐fixing bacteria and mycorrhizal fungi
M. Afkhami, J. Stinchcombe
2016Molecular Ecology64 citations
Semantic Scholar
The genetic architecture of repeated local adaptation to climate in distantly related plants
James R. Whiting, Tom R. Booker, C. Rougeux, Brandon M. Lind +36 more
2024Nature Ecology & Evolution61 citations Open access
Semantic Scholar
Standing genetic variation in a tissue-specific enhancer underlies selfing-syndrome evolution in Capsella
A. Sicard, C. Kappel, Young Wha Lee, N. Woźniak +4 more
2016Proceedings of the National Academy of Sciences of the United States of America61 citations Open access
Semantic Scholar
ESTIMATING UNCERTAINTY IN MULTIVARIATE RESPONSES TO SELECTION
J. Stinchcombe, Anna K. Simonsen, M. Blows
2014Evolution; international journal of organic evolution55 citations Open access
Semantic Scholar
The Relationship between Selection, Network Connectivity, and Regulatory Variation within a Population of Capsella grandiflora
Emily B. Josephs, S. Wright, J. Stinchcombe, D. Schoen
2017Genome Biology and Evolution54 citations Open access
Semantic Scholar
Genetic conflict with a parasitic nematode disrupts the legume–rhizobia mutualism
C. W. Wood, Bonnie L. Pilkington, Priya Vaidya, C. Biel +1 more
2017bioRxiv49 citations Open access
Semantic Scholar
Parental legacy, demography, and admixture influenced the evolution of the two subgenomes of the tetraploid Capsella bursa-pastoris (Brassicaceae)
D. Kryvokhyzha, A. Salcedo, Mimmi C. Eriksson, Tianlin Duan +10 more
2019PLoS Genetics47 citations Open access
Semantic Scholar
The remarkable morphological diversity of leaf shape in sweetpotato (Ipomoea batatas): the influence of genetics, environment, and G×E.
Sonal Gupta, David M. Rosenthal, J. Stinchcombe, R. Baucom
2019New Phytologist44 citations Open access
Semantic Scholar
More partners, more ranges: generalist legumes spread more easily around the globe
T. L. Harrison, Anna K. Simonsen, J. Stinchcombe, M. Frederickson
2018bioRxiv43 citations Open access
Semantic Scholar
A note on measuring natural selection on principal component scores
V. K. Chong, Hannah F. Fung, J. Stinchcombe
2018bioRxiv40 citations Open access
Semantic Scholar
Transposable elements are important contributors to standing variation in gene expression in Capsella grandiflora
J. Uzunović, Emily B. Josephs, J. Stinchcombe, S. Wright
2018bioRxiv38 citations Open access
Semantic Scholar
Multiple Mutualism Effects generate synergistic selection and strengthen fitness alignment in the interaction between legumes, rhizobia and mycorrhizal fungi.
M. Afkhami, M. Friesen, J. Stinchcombe
2021Ecology Letters32 citations Open access
Semantic Scholar
Environmental variation impacts trait expression and selection in the legume-rhizobium symbiosis.
Rebecca T. Batstone, Madeline A. E. Peters, Anna K. Simonsen, J. Stinchcombe +1 more
2020American-Eurasian journal of botany32 citations
Semantic Scholar
Parallel flowering time clines in native and introduced ragweed populations are likely due to adaptation
Brechann V. McGoey, Kathryn A. Hodgins, J. Stinchcombe
2020Ecology and Evolution30 citations Open access
Semantic Scholar
Population genomic scans suggest novel genes underlie convergent flowering time evolution in the introduced range of Arabidopsis thaliana
B. Gould, J. Stinchcombe
2017Molecular Ecology30 citations
Semantic Scholar
No evidence for adaptation to local rhizobial mutualists in the legume Medicago lupulina
T. L. Harrison, C. W. Wood, I. L. Borges, J. Stinchcombe
2017bioRxiv30 citations Open access
Semantic Scholar
Priority effects alter interaction outcomes in a legume–rhizobium mutualism
Julia A. Boyle, Anna K. Simonsen, M. Frederickson, J. Stinchcombe
2020bioRxiv29 citations Open access
Semantic Scholar
Geographically structured genetic variation in the Medicago lupulina–Ensifer mutualism
T. L. Harrison, C. W. Wood, Katy D. Heath, J. Stinchcombe
2017Evolution; international journal of organic evolution27 citations Open access
Semantic Scholar
Nitrogen addition does not influence pre-infection partner choice in the legume-rhizobium symbiosis.
M. Grillo, J. Stinchcombe, Katy D. Heath
2016American-Eurasian journal of botany27 citations Open access
Semantic Scholar
Cooperation and coexpression: How coexpression networks shift in response to multiple mutualists
Sathvik Palakurty, J. Stinchcombe, M. Afkhami
2018Molecular Ecology25 citations
Semantic Scholar
Quantitative genetic variance in experimental fly populations evolving with or without environmental heterogeneity
Yuheng Huang, J. Stinchcombe, A. Agrawal
2015Evolution; international journal of organic evolution25 citations
Semantic Scholar
The genetic architecture and population genomic signatures of glyphosate resistance in Amaranthus tuberculatus
Julia M Kreiner, P. Tranel, D. Weigel, J. Stinchcombe +1 more
2021Molecular Ecology24 citations
Semantic Scholar
Resistance and resilience of soil microbiomes under climate change
Julia A. Boyle, Bridget K. Murphy, I. Ensminger, J. Stinchcombe +1 more
2024bioRxiv23 citations Open access
Semantic Scholar
Phenotypic plasticity made simple, but not too simple
R. Gomulkiewicz, J. Stinchcombe
2022American-Eurasian journal of botany23 citations Open access
Semantic Scholar
Introduced populations of ragweed show as much evolutionary potential as native populations
Brechann V. McGoey, J. Stinchcombe
2018bioRxiv23 citations Open access
Semantic Scholar
Unraveling complexity in climate change effects on beneficial plant–microbe interactions: mechanisms, resilience, and future directions
M. Afkhami, Aimée T. Classen, Collin G Dice, Damian J. Hernandez +5 more
2025New Phytologist21 citations Open access
Semantic Scholar
Repeated origins, widespread gene flow, and allelic interactions of target-site herbicide resistance mutations
Julia M Kreiner, G. Sandler, A. Stern, P. Tranel +3 more
2022eLife21 citations Open access
Semantic Scholar
Rapid Parallel Adaptation in Distinct Invasions of Ambrosia Artemisiifolia Is Driven by Large-Effect Structural Variants
Paul Battlay, Sam Craig, Andhika R. Putra, K. Monro +11 more
2024bioRxiv20 citations Open access
Semantic Scholar
Population genomics of parallel adaptation
Meng Yuan, J. Stinchcombe
2020Molecular Ecology20 citations Open access
Semantic Scholar
Selective ancestral sorting and de novo evolution in the agricultural invasion of Amaranthus tuberculatus
Julia M Kreiner, Amalia Caballero, S. Wright, J. Stinchcombe
2021bioRxiv17 citations Open access
Semantic Scholar
(2786) Proposal to change the conserved type of Ipomoea , nom. cons. ( Convolvulaceae )
L. Eserman, M. Sosef, R. Simão-Bianchini, T. Utteridge +37 more
2020Taxon16 citations Open access
Semantic Scholar
The evolutionary forces shaping cis and trans regulation of gene expression within a population of outcrossing plants.
Emily B. Josephs, Young Wha Lee, C. W. Wood, D. Schoen +2 more
2020Molecular biology and evolution16 citations Open access
Semantic Scholar
Genetic Variation, Simplicity, and Evolutionary Constraints for Function-Valued Traits
J. Kingsolver, N. Heckman, Jonathan Zhang, P. Carter +3 more
2015American Naturalist16 citations
Semantic Scholar
G-matrix stability in clinally diverging populations of an annual weed
Georgianna Henry, J. Stinchcombe
2022bioRxiv15 citations Open access
Semantic Scholar
Rapid adaptation and extinction in synchronized outdoor evolution experiments of Arabidopsis
Xing Wu, Tatiana Bellagio, Yunru Peng, L. Czech +70 more
2026Science14 citations Open access
Semantic Scholar
Population climatic history predicts phenotypic responses in novel environments for Arabidopsis thaliana in North America.
Karen E. Samis, J. Stinchcombe, C. Murren
2019American-Eurasian journal of botany13 citations Open access
Semantic Scholar
The Potential for Genotype-by-Environment Interactions to Maintain Genetic Variation in a Model Legume–Rhizobia Mutualism
Priya Vaidya, J. Stinchcombe
2020Plant Communications12 citations Open access
Semantic Scholar
Evaluating Population Genomic Candidate Genes Underlying Flowering Time in Arabidopsis thaliana Using T-DNA Insertion Lines.
V. K. Chong, J. Stinchcombe
2019Journal of Heredity12 citations Open access
Semantic Scholar
Rapid adaptation and extinction across climates in synchronized outdoor evolution experiments of Arabidopsis thaliana
Xing Wu, Tatiana Bellagio, Yunru Peng, L. Czech +69 more
2025bioRxiv11 citations Open access
Semantic Scholar
Quantifying the role of genome size and repeat content in adaptive variation and the architecture of flowering time in Amaranthus tuberculatus
Julia M Kreiner, Solomiya Hnatovska, J. Stinchcombe, S. Wright
2023PLoS Genetics11 citations Open access
Semantic Scholar

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