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L. Trantírek · SciRah

Researcher profile · Semantic Scholar

L. Trantírek

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L. Trantírek — researcher profile on SciRah

h-index: 33
Works: 111
Citations: 3,122

Most-cited papers

Evaluation of the Stability of DNA i‐Motifs in the Nuclei of Living Mammalian Cells
Š. Džatko, Michaela Krafčíková, Robert Hänsel-Hertsch, Tomas Fessl +6 more
2018Angewandte Chemie201 citations Open access
Semantic Scholar
The parallel G-quadruplex structure of vertebrate telomeric repeat sequences is not the preferred folding topology under physiological conditions
R. Hänsel, F. Löhr, S. Foldynová-Trantírková, E. Bamberg +2 more
2011Nucleic Acids Research158 citations Open access
Semantic Scholar
Crystal structures of T. brucei MRP1/MRP2 guide-RNA binding complex reveal RNA matchmaking mechanism.
M. Schumacher, E. Karamooz, A. Zíková, L. Trantírek +1 more
2006Cell115 citations Open access
Semantic Scholar
High-resolution insight into G-overhang architecture.
R. Hänsel, F. Löhr, L. Trantírek, V. Dötsch
2013Journal of the American Chemical Society100 citations
Semantic Scholar
Evaluation of parameters critical for observing nucleic acids inside living Xenopus laevis oocytes by in-cell NMR spectroscopy.
R. Hänsel, S. Foldynová-Trantírková, F. Löhr, Janina Buck +5 more
2009Journal of the American Chemical Society100 citations
Semantic Scholar
In-cell NMR and EPR spectroscopy of biomacromolecules.
R. Hänsel, L. Luh, Ivan Corbeski, L. Trantírek +1 more
2014Angewandte Chemie93 citations
Semantic Scholar
Breast cancer-specific mutations in CK1ε inhibit Wnt/β-catenin and activate the Wnt/Rac1/JNK and NFAT pathways to decrease cell adhesion and promote cell migration
S. Foldynová-Trantírková, Petra Sekyrová, Katerina Tmejova, Eva Brumovská +7 more
2010Breast Cancer Research87 citations Open access
Semantic Scholar
Triplex intermediates in folding of human telomeric quadruplexes probed by microsecond-scale molecular dynamics simulations.
Petr Stadlbauer, L. Trantírek, T. Cheatham, J. Koča +1 more
2014Biochimie71 citations Open access
Semantic Scholar
Notch stimulates growth by direct regulation of genes involved in the control of glycolysis and the tricarboxylic acid cycle
Věra Slaninová, Michaela Krafčíková, R. Perez-Gomez, P. Steffal +3 more
2016Open Biology67 citations Open access
Semantic Scholar
Thermal and pH stabilities of i-DNA: confronting in vitro experiments with models and in-cell NMR data.
Mingpan Cheng, De-Hui Qiu, Liezel Tamon, Eva Ištvánková +10 more
2021Angewandte Chemie63 citations Open access
Semantic Scholar
Instability restricts signaling of multiple fibroblast growth factors
M. Buchtová, R. Chaloupkova, M. Zakrzewska, I. Veselá +12 more
2015Cellular and Molecular Life Sciences62 citations Open access
Semantic Scholar
Hairpins participating in folding of human telomeric sequence quadruplexes studied by standard and T-REMD simulations
Petr Stadlbauer, Petra Kührová, P. Banáš, J. Koča +4 more
2015Nucleic Acids Research61 citations Open access
Semantic Scholar
Functional Analysis of Dishevelled-3 Phosphorylation Identifies Distinct Mechanisms Driven by Casein Kinase 1ϵ and Frizzled5
Ondřej Bernatík, K. Šedová, Carolin Schille, R. Ganji +5 more
2014Journal of Biological Chemistry61 citations Open access
Semantic Scholar
Monitoring DNA-ligand interactions in living human cells using NMR spectroscopy.
Michaela Krafčíková, Š. Džatko, Coralie Caron, A. Granzhan +8 more
2019Journal of the American Chemical Society60 citations Open access
Semantic Scholar
Parallel G-triplexes and G-hairpins as potential transitory ensembles in the folding of parallel-stranded DNA G-Quadruplexes
Petr Stadlbauer, Petra Kührová, Lukáš Vicherek, P. Banáš +3 more
2019Nucleic Acids Research53 citations Open access
Semantic Scholar
An inactivating mutation in intestinal cell kinase, ICK, impairs hedgehog signalling and causes short rib-polydactyly syndrome.
S. Taylor, Michaela Kunova Bosakova, M. Varecha, Lukas Balek +16 more
2016Human Molecular Genetics53 citations Open access
Semantic Scholar
In-cell NMR suggests that DNA i-motif levels are strongly depleted in living human cells
Pavlína Víšková, Eva Ištvánková, Jan Ryneš, Š. Džatko +10 more
2024Nature Communications52 citations Open access
Semantic Scholar
PTH/PTHrP-SIK3 mediated pathway affects skeletogenesis through altered mTOR signaling
Fabiana Csukasi, Ivan Duran, Maya Barad, Tomáš Bárta +9 more
2018Science Translational Medicine52 citations Open access
Semantic Scholar
Structure of a Stable G-Hairpin.
Martin Gajarský, M. Živkovič, Petr Stadlbauer, B. Pagano +6 more
2017Journal of the American Chemical Society49 citations
Semantic Scholar
Towards characterization of DNA structure under physiological conditions in vivo at the single-molecule level using single-pair FRET
Tomas Fessl, F. Adamec, T. Polívka, S. Foldynová-Trantírková +2 more
2012Nucleic Acids Research49 citations Open access
Semantic Scholar
Fibroblast growth factor receptor influences primary cilium length through an interaction with intestinal cell kinase
Michaela Kunova Bosakova, Alexandru Nita, Tomas Gregor, M. Varecha +24 more
2019Proceedings of the National Academy of Sciences of the United States of America45 citations Open access
Semantic Scholar
The inositol phosphatase SHIP2 enables sustained ERK activation downstream of FGF receptors by recruiting Src kinases
B. Fafilek, Lukas Balek, M. Bosakova, M. Varecha +16 more
2018Science Signaling45 citations Open access
Semantic Scholar
A novel variant of FGFR3 causes proportionate short stature.
S. Kant, Iveta Červenková, Lukas Balek, L. Trantírek +11 more
2015European Journal of Endocrinology44 citations Open access
Semantic Scholar
Structural study of elements of Tetrahymena telomerase RNA stem-loop IV domain important for function.
R. Richards, Haihong Wu, L. Trantírek, Catherine M. O'Connor +2 more
2006RNA: A publication of the RNA Society44 citations Open access
Semantic Scholar
The future of integrated structural biology.
H. Schwalbe, Pauline Audergon, Natalie E. C. Haley, C. Amaro +24 more
2024Structure43 citations Open access
Semantic Scholar
Microenvironmental interactions between endothelial and lymphoma cells: a role for the canonical WNT pathway in Hodgkin lymphoma
F. Linke, Moritz Harenberg, M. Nietert, Sebastian Zaunig +17 more
2017Leukemia41 citations Open access
Semantic Scholar
Structure and function of the native and recombinant mitochondrial MRP1/MRP2 complex from Trypanosoma brucei.
A. Zíková, J. Kopečná, M. Schumacher, K. Stuart +2 more
2008International Journal of Parasitology41 citations Open access
Semantic Scholar
NF449 Is a Novel Inhibitor of Fibroblast Growth Factor Receptor 3 (FGFR3) Signaling Active in Chondrocytes and Multiple Myeloma Cells*
P. Krejci, S. Murakami, J. Procházková, L. Trantírek +7 more
2010Journal of Biological Chemistry38 citations Open access
Semantic Scholar
G-quadruplex formation in the Oct4 promoter positively regulates Oct4 expression.
D. Renčiuk, Jan Ryneš, I. Kejnovská, S. Foldynová-Trantírková +3 more
2017Biochimica et Biophysica Acta. Gene Regulatory Mechanisms36 citations
Semantic Scholar
A sodium/potassium switch for G4-prone G/C-rich sequences
Yu Luo, Martina Lenarčič Živković, Jia-Wei Wang, Jan Ryneš +4 more
2023Nucleic Acids Research33 citations Open access
Semantic Scholar
Nanodiamonds as "artificial proteins": Regulation of a cell signalling system using low nanomolar solutions of inorganic nanocrystals.
Lukas Balek, M. Buchtová, Michaela Kunova Bosakova, M. Varecha +13 more
2018Biomaterials31 citations Open access
Semantic Scholar
Revisiting the planarity of nucleic acid bases: Pyramidilization at glycosidic nitrogen in purine bases is modulated by orientation of glycosidic torsion
Vladimír Sychrovský, S. Foldynová-Trantírková, N. Špačková, K. Robeyns +5 more
2009Nucleic Acids Research31 citations Open access
Semantic Scholar
Dishevelled-3 conformation dynamics analyzed by FRET-based biosensors reveals a key role of casein kinase 1
J. Harnoš, Maria Consuelo Alonso Cañizal, Miroslav Jurásek, Jitender Kumar +17 more
2019Nature Communications28 citations Open access
Semantic Scholar
Investigation of quadruplex structure under physiological conditions using in-cell NMR.
R. Hänsel, S. Foldynová-Trantírková, V. Dötsch, L. Trantírek
2013Topics in current chemistry28 citations
Semantic Scholar
Advances in the cellular structural biology of nucleic acids
Ilektra-Chara Giassa, Jan Ryneš, Tomas Fessl, S. Foldynová-Trantírková +1 more
2018FEBS Letters27 citations Open access
Semantic Scholar
DNA i-motif formation at neutral pH is driven by kinetic partitioning
P. Školáková, Martin Gajarský, Jan Palacký, Denis Šubert +4 more
2023Nucleic Acids Research26 citations Open access
Semantic Scholar
RNA G-quadruplex formation in biologically important transcribed regions: can two-tetrad intramolecular RNA quadruplexes be formed?
Pritha Basu, I. Kejnovská, Martin Gajarský, Denis Šubert +5 more
2024Nucleic Acids Research25 citations Open access
Semantic Scholar
Composite 5-methylations of cytosines modulate i-motif stability in a sequence-specific manner: Implications for DNA nanotechnology and epigenetic regulation of plant telomeric DNA.
P. Školáková, Zahra Badri, S. Foldynová-Trantírková, Jan Ryneš +7 more
2020Biochimica et Biophysica Acta - General Subjects25 citations
Semantic Scholar
Clustered abasic lesions profoundly change the structure and stability of human telomeric G-quadruplexes
I. Kejnovská, K. Bednářová, D. Renčiuk, Z. Dvořáková +5 more
2017Nucleic Acids Research25 citations Open access
Semantic Scholar
Membrane-Depolarizing Channel Blockers Induce Selective Glioma Cell Death by Impairing Nutrient Transport and Unfolded Protein/Amino Acid Responses.
M. Niklasson, Gianluca Maddalo, Zuzana Šrámková, E. Mutlu +24 more
2017Cancer Research24 citations Open access
Semantic Scholar
One reporter for in-cell activity profiling of majority of protein kinase oncogenes
Iva Gudernova, S. Foldynová-Trantírková, Barbora El Ghannamova, B. Fafilek +9 more
2017eLife23 citations Open access
Semantic Scholar
Towards Profiling of the G-Quadruplex Targeting Drugs in the Living Human Cells Using NMR Spectroscopy
Daniel Krafčík, Eva Ištvánková, Š. Džatko, Pavlína Víšková +2 more
2021International Journal of Molecular Sciences22 citations Open access
Semantic Scholar
Unique C. elegans telomeric overhang structures reveal the evolutionarily conserved properties of telomeric DNA
P. Školáková, S. Foldynová-Trantírková, K. Bednářová, R. Fiala +2 more
2015Nucleic Acids Research21 citations Open access
Semantic Scholar
Indirect NMR spin-spin coupling constants 3J(P,C) and 2J(P,H) across the P-O...H-C link can be used for structure determination of nucleic acids.
Vladimír Sychrovský, J. Sponer, L. Trantírek, B. Schneider
2006Journal of the American Chemical Society21 citations
Semantic Scholar
G-Quadruplex formation by DNA sequences deficient in guanines: Two tetrad parallel quadruplexes do not fold intramolecularly.
I. Kejnovská, Petr Stadlbauer, L. Trantírek, D. Renčiuk +7 more
2021Chemistry20 citations
Semantic Scholar
Sugar pucker modulates the cross-correlated relaxation rates across the glycosidic bond in DNA.
Vladimír Sychrovský, Norbert Müller, B. Schneider, Vilko Smrečki +3 more
2005Journal of the American Chemical Society19 citations
Semantic Scholar
Dual Targeting of BRAF and mTOR Signaling in Melanoma Cells with Pyridinyl Imidazole Compounds
Veronika Palušová, Tereza Renzová, A. Verlande, Tereza Vaclová +15 more
2020Cancers18 citations Open access
Semantic Scholar
Analysis of binding interfaces of the human scaffold protein AXIN1 by peptide microarrays
J. Harnoš, Jan Ryneš, Pavlína Víšková, S. Foldynová-Trantírková +3 more
2018Journal of Biological Chemistry18 citations Open access
Semantic Scholar
NMR cross-correlated relaxation rates reveal ion coordination sites in DNA.
R. Fiala, N. Špačková, S. Foldynová-Trantírková, J. Sponer +2 more
2011Journal of the American Chemical Society18 citations
Semantic Scholar
Role of folding kinetics of secondary structures in telomeric G-overhangs in the regulation of telomere maintenance in Saccharomyces cerevisiae
K. Juríková, Martin Gajarský, Mona Hajikazemi, J. Nosek +4 more
2020Journal of Biological Chemistry17 citations Open access
Semantic Scholar

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S. Foldynová-Trantírková×19
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S. Foldynová-Trantírková — researcher profile on SciRah
P. Krejci×10
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P. Krejci — researcher profile on SciRah
J. Mergny×9
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Jan Ryneš×7
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Jan Ryneš — researcher profile on SciRah

Michaela Krafčíková

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R. Hänsel — researcher profile on SciRah