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M. M. Pradeepa · SciRah

Researcher profile · Semantic Scholar

M. M. Pradeepa

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M. M. Pradeepa — researcher profile on SciRah

h-index: 19
Works: 48
Citations: 1,786

Most-cited papers

Psip1/Ledgf p52 Binds Methylated Histone H3K36 and Splicing Factors and Contributes to the Regulation of Alternative Splicing
M. M. Pradeepa, Heidi G. E. Sutherland, J. Ule, G. Grimes +1 more
2012PLoS Genetics353 citations Open access
Semantic Scholar
Histone H3 globular domain acetylation identifies a new class of enhancers
M. M. Pradeepa, G. Grimes, Y. Kumar, Gabrielle Olley +3 more
2016Nature Genetics224 citations Open access
Semantic Scholar
H4K16 acetylation marks active genes and enhancers of embryonic stem cells, but does not alter chromatin compaction
G. Taylor, Ragnhild Eskeland, Betül Hekimoglu-Balkan, M. M. Pradeepa +1 more
2013Genome Research200 citations Open access
Semantic Scholar
The E3 ubiquitin ligase activity of RING1B is not essential for early mouse development
R. Illingworth, M. Moffat, Abigail R. Mann, D. Read +4 more
2015Genes & Development156 citations Open access
Semantic Scholar
BRD4 interacts with NIPBL and BRD4 is mutated in a Cornelia de Lange–like syndrome
Gabrielle Olley, Morad Ansari, Hemant Bengani, Graeme R. Grimes +11 more
2018Nature Genetics122 citations Open access
Semantic Scholar
An Interferon Regulated MicroRNA Provides Broad Cell-Intrinsic Antiviral Immunity through Multihit Host-Directed Targeting of the Sterol Pathway
Kevin A. Robertson, Wei Y. Hsieh, T. Forster, M. Blanc +18 more
2016PLoS Biology109 citations Open access
Semantic Scholar
Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage
Ray Marin, Diego Cortez, F. Lamanna, M. M. Pradeepa +12 more
2017Genome Research96 citations Open access
Semantic Scholar
Causal role of histone acetylations in enhancer function
M. M. Pradeepa
2016Transcription63 citations Open access
Semantic Scholar
H4K16ac activates the transcription of transposable elements and contributes to their cis-regulatory function
Debosree Pal, Manthan Patel, Fanny Boulet, Jayakumar Sundarraj +7 more
2022bioRxiv62 citations Open access
Semantic Scholar
Chromatin remodeling during mammalian spermatogenesis: role of testis specific histone variants and transition proteins.
M. M. Pradeepa, M. Satyanarayana Rao
2007Society of Reproduction and Fertility supplement51 citations
Semantic Scholar
Involvement of Importin-4 in the Transport of Transition Protein 2 into the Spermatid Nucleus
M. M. Pradeepa, S. Manjunatha, V. Sathish, Shipra Agrawal +1 more
2007Molecular and Cellular Biology37 citations Open access
Semantic Scholar
Genetic variation at mouse and human ribosomal DNA influences associated epigenetic states
Francisco Rodríguez-Algarra, Robert A E Seaborne, Amy F. Danson, Selin Yildizoglu +13 more
2022bioRxiv35 citations Open access
Semantic Scholar
Psip1/Ledgf p75 restrains Hox gene expression by recruiting both trithorax and polycomb group proteins
M. M. Pradeepa, G. Grimes, G. Taylor, Heidi G. E. Sutherland +1 more
2014Nucleic Acids Research35 citations Open access
Semantic Scholar
Explorer Psip 1 / Ledgf p 52 Binds Methylated Histone H 3 K 36 and Splicing Factors and Contributes to the Regulation of Alternative Splicing
M. M. Pradeepa, Heidi G. E. Sutherland, J. Ule, G. Grimes +1 more
201231 citations
Semantic Scholar
Psip1/p52 regulates posterior Hoxa genes through activation of lncRNA Hottip
M. M. Pradeepa, F. McKenna, G. Taylor, Hemant Bengani +4 more
2017PLoS Genetics30 citations Open access
Semantic Scholar
PSIP1/LEDGF reduces R-loops at transcription sites to maintain genome integrity
Sundarraj Jayakumar, Manthan Patel, Fanny Boulet, Hadicha Aziz +3 more
2023bioRxiv28 citations Open access
Semantic Scholar
BRD4 interacts with NIPBL and BRD4 is mutated in a Cornelia de Lange-like syndrome
Gabrielle Olley, Morad Ansari, Hemant Bengani, Graeme R. Grimes +12 more
2018Nature Genetics27 citations Open access
Semantic Scholar
Cornelia de Lange syndrome-associated mutations cause a DNA damage signalling and repair defect
Gabrielle Olley, M. M. Pradeepa, G. Grimes, S. Piquet +4 more
2021Nature Communications24 citations Open access
Semantic Scholar
Acetylation of Transition Protein 2 (TP2) by KAT3B (p300) Alters Its DNA Condensation Property and Interaction with Putative Histone Chaperone NPM3*
M. M. Pradeepa, G. Nikhil, Annavarapu Hari Kishore, Giriyapura N Bharath +2 more
2009Journal of Biological Chemistry22 citations Open access
Semantic Scholar
Spatiotemporal Organization of AT- and GC-rich DNA and Their Association With Transition Proteins TP1 and TP2 in Rat Condensing Spermatids
Ullas Kolthur-Seetharam, M. M. Pradeepa, Nikhil Gupta, Rammohan Narayanaswamy +1 more
2009Journal of Histochemistry and Cytochemistry17 citations Open access
Semantic Scholar
Proteomic analysis of H3K36me3 and PSIP1/p75 (LEDGF) complexes reveal their wider role in DNA repair
Jayakumar Sundarraj, G. Taylor, A. von Kriegsheim, M. M. Pradeepa
2017Wellcome Open Research15 citations Open access
Semantic Scholar
Nucleosome reorganisation in breast cancer tissues
D. Jacob, Wilfried M Guiblet, Hulkar Mamayusupova, Mariya Shtumpf +21 more
2023bioRxiv12 citations Open access
Semantic Scholar
Mammalian H4K16ac regulates the spatiotemporal order of genome replication rather than gene expression
M. Milan, Valeria Runfola, Manthan Patel, Lucia Falbo +7 more
2025Nucleic Acids Research7 citations Open access
Semantic Scholar
Publisher Correction: BRD4 interacts with NIPBL and BRD4 is mutated in a Cornelia de Lange–like syndrome
Gabrielle Olley, Morad Ansari, Hemant Bengani, G. Grimes +11 more
2018Nature Genetics7 citations Open access
Semantic Scholar
Regulatory de novo mutations underlying intellectual disability
Matias G. De Vas, Fanny Boulet, Shweta S. Joshi, Myles G. Garstang +12 more
2022Life Science Alliance5 citations Open access
Semantic Scholar
organization and CTCF binding in multiple mammalian lineages.
Debosree Pal, Manthan Patel, Fanny Boulet, Jayakumar Sundarraj +6 more
20225 citations
Semantic Scholar
Non-coding mutations at enhancer clusters contribute to pancreatic ductal adenocarcinoma
Minal B. Patel, E. Maniati, S. Atanur, Debosree Pal +6 more
2023bioRxiv3 citations Open access
Semantic Scholar
Genetic variation at mouse and human ribosomal DNA influences associated epigenetic states
Francisco Rodríguez-Algarra, Robert A E Seaborne, Amy F. Danson, Selin Yildizoglu +13 more
2022Genome Biology3 citations Open access
Semantic Scholar
An Enhancer-Derived RNA Muscles In to Regulate Myogenin In trans.
M. Garstang, M. M. Pradeepa
2018Molecules and Cells3 citations Open access
Semantic Scholar
Publisher Correction: BRD4 interacts with NIPBL and BRD4 is mutated in a Cornelia de Lange–like syndrome
Gabrielle Olley, Morad Ansari, Hemant Bengani, G. Grimes +12 more
2018Nature Genetics3 citations Open access
Semantic Scholar
Chromatin remodeling during mammalian spermatogenesis
M. M. Pradeepa, M. Satyanarayana Rao, Pradeepa Madapura
20073 citations
Semantic Scholar
De novo variants in population constrained fetal brain enhancers and intellectual disability
M. D. De Vas, M. Garstang, Shweta S. Joshi, Tahir N. Khan +12 more
2019bioRxiv2 citations Open access
Semantic Scholar
Explainable AI identifies H3K18ac as a new marker of active enhancers
Khizra Maqsood, Duarte Polvora Brandao, J. Wolfe, Bhavana Kayyar +9 more
2026bioRxiv1 citations Open access
Semantic Scholar
Non-canonical enhancers control gene expression and cell fate in human pluripotent stem cells
Yang Cao, Oleksandr Dovgusha, A. Ebrahimi, Stephen Bevan +9 more
2025bioRxiv1 citations Open access
Semantic Scholar
Early Prediction of Preeclampsia Based on Transposable Elements signature in cell-free RNA
Manthan Patel, Ahmed S. Ali, Adrianna Dabrowska, Fanny Boulet +2 more
2024bioRxiv1 citations Open access
Semantic Scholar
Psip1/p52 regulates distal Hoxa genes through activation of lncRNA Hottip
M. M. Pradeepa, G. Taylor, G. Grimes, A. Wood +1 more
2016bioRxiv1 citations Open access
Semantic Scholar
WNT/β-catenin increases 3D chromatin mobility and reorganisation during posterior cell state transitions
Annabelle A. M. Wurmser, Ling-Jun Mao, Nina Markevych, Gökçe G. Agsu +11 more
2026bioRxiv0 citations Open access
Semantic Scholar
BRD4 represses developmental and neuronal genes through interaction with PRC1.6
Fanny Boulet, Manthan Patel, Z. Zanjani, Nuria Andrés-Sánchez +9 more
2026bioRxiv0 citations Open access
Semantic Scholar
Unlocking Colorectal Cancer Diagnostics With Circulating Progastrin (hPG80): A Scoping Review
V. Butnari, D. Dinkar, J. Jayasinghe, Manthan Patel +4 more
2026Biomarker Insights0 citations Open access
Semantic Scholar
Author Correction: PSIP1/LEDGF reduces R-loops at transcription sites to maintain genome integrity
Sundarraj Jayakumar, Manthan Patel, Fanny Boulet, Hadicha Aziz +3 more
2024Nature Communications0 citations Open access
Semantic Scholar
The Epiallelic Nature of Mouse Ribosomal DNA
Francisco Rodríguez-Algarra, Amy F. Danson, Robert A E Seaborne, Selin Yildizoglu +12 more
20210 citations Open access
Semantic Scholar
Cornelia-de Lange syndrome-associated mutations cause a DNA damage signalling and repair defect
Gabrielle Olley, M. M. Pradeepa, David R. FitzPatrick, Wendy A. Bickmore +1 more
2019bioRxiv0 citations Open access
Semantic Scholar
De novo mutations in fetal brain specific enhancers play a significant role in severe intellectual disability
M. D. De Vas, M. Garstang, Shweta S. Joshi, T. Khan +11 more
20190 citations
Semantic Scholar
Explorer The E 3 ubiquitin ligase activity of Ring 1 B is not essential for early mouse development
R. Illingworth, M. Moffat, Abigail R. Mann, D. Read +4 more
20170 citations
Semantic Scholar
Native chromatin immunoprecipitation of histone marks to Identify enhancer status
M. M. Pradeepa, Y. Kumar, G. Grimes, R. Illingworth +1 more
20160 citations Open access
Semantic Scholar
Histone H3 globular domain acetylation identifies a new class of enhancers
M. M. Pradeepa, G. Grimes, Y. Kumar, Gabrielle Olley +4 more
20160 citations
Semantic Scholar
Explorer Psip 1 / Ledgf p 75 restrains Hox gene expression by recruiting both trithorax and polycomb group proteins
M. M. Pradeepa, G. Grimes, G. Taylor, Heidi G. E. Sutherland +1 more
20140 citations
Semantic Scholar
BRD4 represses developmental and neuronal genes through interactions with polycomb complexes
Fanny Boulet, Manthan Patel, Z. Zanjani, Nuria Andrés-Sánchez +9 more
0 citations
Semantic Scholar

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