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A. Sheppard · SciRah

Researcher profile · Semantic Scholar

A. Sheppard

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A. Sheppard — researcher profile on SciRah

h-index: 28
Works: 54
Citations: 3,363

Most-cited papers

A Candida auris Outbreak and Its Control in an Intensive Care Setting
David W. Eyre, A. Sheppard, H. Madder, I. Moir +19 more
2018New England Journal of Medicine451 citations
Semantic Scholar
Evolutionary History of the Global Emergence of the Escherichia coli Epidemic Clone ST131
N. Stoesser, A. Sheppard, L. Pankhurst, N. de Maio +19 more
2015mBio322 citations Open access
Semantic Scholar
Nested Russian Doll-Like Genetic Mobility Drives Rapid Dissemination of the Carbapenem Resistance Gene blaKPC
A. Sheppard, N. Stoesser, Daniel J. Wilson, R. Sebra +13 more
2015Antimicrobial Agents and Chemotherapy278 citations Open access
Semantic Scholar
Comparison of long-read sequencing technologies in the hybrid assembly of complex bacterial genomes
N. de Maio, L. Shaw, A. Hubbard, Sophie George +14 more
2019bioRxiv260 citations Open access
Semantic Scholar
Integrated chromosomal and plasmid sequence analyses reveal diverse modes of carbapenemase gene spread among Klebsiella pneumoniae
S. David, V. Cohen, S. Reuter, A. Sheppard +6 more
2020Proceedings of the National Academy of Sciences of the United States of America156 citations Open access
Semantic Scholar
Klebsiella pneumoniae Carbapenemase (KPC)-Producing K. pneumoniae at a Single Institution: Insights into Endemicity from Whole-Genome Sequencing
A. Mathers, N. Stoesser, A. Sheppard, L. Pankhurst +9 more
2015Antimicrobial Agents and Chemotherapy146 citations Open access
Semantic Scholar
Genome Sequencing of an Extended Series of NDM-Producing Klebsiella pneumoniae Isolates from Neonatal Infections in a Nepali Hospital Characterizes the Extent of Community- versus Hospital-Associated Transmission in an Endemic Setting
N. Stoesser, A. Giess, E. Batty, A. Sheppard +16 more
2014Antimicrobial Agents and Chemotherapy132 citations Open access
Semantic Scholar
The Stealthy Superbug: the Role of Asymptomatic Enteric Carriage in Maintaining a Long-Term Hospital Outbreak of ST228 Methicillin-Resistant Staphylococcus aureus
L. Senn, O. Clerc, G. Zanetti, P. Basset +8 more
2016mBio122 citations Open access
Semantic Scholar
Maternal colonisation with Streptococcus agalactiae, and associated stillbirth and neonatal disease in coastal Kenya
A. Seale, A. Koech, A. Sheppard, H. Barsosio +29 more
2016Nature Microbiology110 citations Open access
Semantic Scholar
Severe infections emerge from commensal bacteria by adaptive evolution
B. Young, Chieh-Hsi Wu, N. C. Gordon, K. Cole +16 more
2017eLife104 citations Open access
Semantic Scholar
Genomic epidemiology of global Klebsiella pneumoniae carbapenemase (KPC)-producing Escherichia coli
N. Stoesser, A. Sheppard, G. Peirano, L. Anson +11 more
2017Scientific Reports98 citations Open access
Semantic Scholar
Plassembler: an automated bacterial plasmid assembly tool
G. Bouras, A. Sheppard, V. Mallawaarachchi, S. Vreugde
2023Bioinform.87 citations Open access
Semantic Scholar
Resolving plasmid structures in Enterobacteriaceae using the MinION nanopore sequencer: assessment of MinION and MinION/Illumina hybrid data assembly approaches
S. George, L. Pankhurst, A. Hubbard, A. Votintseva +9 more
2017Microbial Genomics82 citations Open access
Semantic Scholar
Host–Pathogen Coevolution: The Selective Advantage of Bacillus thuringiensis Virulence and Its Cry Toxin Genes
Leila Masri, A. Branca, A. Sheppard, Andrei Papkou +15 more
2015PLoS Biology78 citations Open access
Semantic Scholar
Klebsiella quasipneumoniae Provides a Window into Carbapenemase Gene Transfer, Plasmid Rearrangements, and Patient Interactions with the Hospital Environment
A. Mathers, D. Crook, A. Vaughan, Katie E. Barry +7 more
2019Antimicrobial Agents and Chemotherapy77 citations Open access
Semantic Scholar
Ordering the mob: Insights into replicon and MOB typing schemes from analysis of a curated dataset of publicly available plasmids
Alex Orlek, H. Phan, A. Sheppard, M. Doumith +7 more
2017Plasmid71 citations Open access
Semantic Scholar
Instability of Plastid DNA in the Nuclear Genome
A. Sheppard, J. Timmis
2009PLoS Genetics68 citations Open access
Semantic Scholar
Transfer of Plastid DNA to the Nucleus Is Elevated during Male Gametogenesis in Tobacco1[OA]
A. Sheppard, M. Ayliffe, L. Blatch, A. Day +6 more
2008Plant Physiology66 citations Open access
Semantic Scholar
High Rates of Human Fecal Carriage of mcr-1–Positive Multidrug-Resistant Enterobacteriaceae Emerge in China in Association With Successful Plasmid Families
Lan-Lan Zhong, H. Phan, Cong Shen, K. Vihta +15 more
2018Clinical Infectious Diseases65 citations Open access
Semantic Scholar
Dynamics of MDR Enterobacter cloacae outbreaks in a neonatal unit in Nepal: insights using wider sampling frames and next-generation sequencing
N. Stoesser, A. Sheppard, M. Shakya, B. Sthapit +7 more
2015Journal of Antimicrobial Chemotherapy62 citations Open access
Semantic Scholar
Enhanced Klebsiella pneumoniae Carbapenemase Expression from a Novel Tn4401 Deletion
Anita Cheruvanky, N. Stoesser, A. Sheppard, D. Crook +8 more
2017Antimicrobial Agents and Chemotherapy53 citations Open access
Semantic Scholar
Chromosomal Integration of the Klebsiella pneumoniae Carbapenemase Gene, blaKPC, in Klebsiella Species Is Elusive but Not Rare
A. Mathers, N. Stoesser, W. Chai, J. Carroll +9 more
2016Antimicrobial Agents and Chemotherapy51 citations Open access
Semantic Scholar
Complete Genome Sequence of Bacillus thuringiensis Strain 407 Cry-
A. Sheppard, Anja Poehlein, P. Rosenstiel, H. Liesegang +1 more
2013Genome Announcements50 citations Open access
Semantic Scholar
Reconciling the Potentially Irreconcilable? Genotypic and Phenotypic Amoxicillin-Clavulanate Resistance in Escherichia coli
T. Davies, N. Stoesser, A. Sheppard, M. AbuOun +18 more
2019Antimicrobial Agents and Chemotherapy47 citations Open access
Semantic Scholar
Capsular Typing Method for Streptococcus agalactiae Using Whole-Genome Sequence Data
A. Sheppard, A. Vaughan, N. Jones, P. Turner +7 more
2016Journal of Clinical Microbiology42 citations Open access
Semantic Scholar
The Role of fosA in Challenges with Fosfomycin Susceptibility Testing of Multispecies Klebsiella pneumoniae Carbapenemase-Producing Clinical Isolates
Zachary S. Elliott, Katie E. Barry, Heather L. Cox, N. Stoesser +8 more
2019Journal of Clinical Microbiology41 citations Open access
Semantic Scholar
Don't overlook the little guy: An evaluation of the frequency of small plasmids co-conjugating with larger carbapenemase gene containing plasmids.
Katie E. Barry, A. Wailan, A. Sheppard, D. Crook +5 more
2019Plasmid40 citations Open access
Semantic Scholar
Risk factors for Klebsiella pneumoniae carbapenemase (KPC) gene acquisition and clinical outcomes across multiple bacterial species
A. Mathers, Kasi Vegesana, Ian German-Mesner, J. Ainsworth +8 more
2020Journal of Hospital Infection38 citations Open access
Semantic Scholar
Complete Genome Sequence of KPC-Producing Klebsiella pneumoniae Strain CAV1193
A. Sheppard, N. Stoesser, R. Sebra, A. Kasarskis +6 more
2016Genome Announcements20 citations Open access
Semantic Scholar
Complete Sequencing of Plasmids Containing blaOXA-163 and blaOXA-48 in Escherichia coli Sequence Type 131
N. Stoesser, A. Sheppard, G. Peirano, R. Sebra +6 more
2016Antimicrobial Agents and Chemotherapy20 citations Open access
Semantic Scholar
First Report of blaIMP-14 on a Plasmid Harboring Multiple Drug Resistance Genes in Escherichia coli Sequence Type 131
N. Stoesser, A. Sheppard, G. Peirano, R. Sebra +6 more
2016Antimicrobial Agents and Chemotherapy17 citations Open access
Semantic Scholar
Introducing an RNA editing requirement into a plastid-localised transgene reduces but does not eliminate functional gene transfer to the nucleus
A. Sheppard, P. Madesis, Andrew H. Lloyd, A. Day +2 more
2011Plant Molecular Biology14 citations
Semantic Scholar
Maternal colonisation with Streptococcus agalactiae, and associated stillbirth and neonatal disease in coastal Kenya.
A. Seale, A. Koech, A. Sheppard, H. Barsosio +29 more
2016Nature Microbiology13 citations
Semantic Scholar
Streptococcus agalactiae that caused meningitis in healthy adults in 1998 are ST283, the same type that caused a food-borne outbreak of invasive sepsis in 2015: an observational molecular epidemiology study.
T. Barkham, A. Sheppard, N. Jones, S.-L. Chen
2018Clinical Microbiology and Infection12 citations Open access
Semantic Scholar
Nested Russian Doll-like Genetic Mobility Drives
A. Sheppard, N. Stoesser, Daniel J. Wilson, R. Sebra +12 more
201512 citations
Semantic Scholar
Discordance between different bioinformatic methods for identifying resistance genes from short-read genomic data, with a focus on Escherichia coli
T. Davies, J. Swann, A. Sheppard, Hayleigh Pickford +11 more
2021bioRxiv11 citations Open access
Semantic Scholar
Complete Genome sequence of the nematicidal Bacillus thuringiensis MYBT18246
Jacqueline Hollensteiner, Anja Poehlein, C. Spröer, B. Bunk +4 more
2017Standards in Genomic Sciences10 citations Open access
Semantic Scholar
Promiscuous Organellar DNA
Andrew H. Lloyd, M. Rousseau-Gueutin, J. Timmis, A. Sheppard +1 more
201210 citations
Semantic Scholar
Complete genome sequence of the nematicidal Bacillus thuringiensis MYBT18247.
Jacqueline Hollensteiner, Anja Poehlein, C. Spröer, B. Bunk +4 more
2017Journal of Biotechnology8 citations Open access
Semantic Scholar
High instability of a nematicidal Cry toxin plasmid in Bacillus thuringiensis.
A. Sheppard, Rania Nakad, Manja Saebelfeld, Anna C. Masche +2 more
2016Journal of Invertebrate Pathology6 citations
Semantic Scholar
Gene Transfer to the Nucleus
M. Rousseau-Gueutin, Andrew H. Lloyd, A. Sheppard, J. Timmis
20126 citations
Semantic Scholar
Genomic analysis of carbapenemase-encoding plasmids from Klebsiella pneumoniae across Europe highlights three major patterns of dissemination
S. David, V. Cohen, S. Reuter, A. Sheppard +6 more
2019bioRxiv5 citations Open access
Semantic Scholar
Severe infections emerge from the microbiome by adaptive evolution
B. Young, Chieh-Hsi Wu, N. C. Gordon, K. Cole +16 more
2017bioRxiv4 citations Open access
Semantic Scholar
Corrigendum: Resolving plasmid structures in Enterobacteriaceae using the MinION nanopore sequencer: assessment of MinION and MinION/Illumina hybrid data assembly approaches
S. George, L. Pankhurst, A. Hubbard, A. Votintseva +9 more
2018Microbial Genomics1 citations Open access
Semantic Scholar
Author response: Severe infections emerge from commensal bacteria by adaptive evolution
B. Young, Chieh-Hsi Wu, N. C. Gordon, K. Cole +16 more
20171 citations Open access
Semantic Scholar
505. Making of a “Super-Duper Bug”: Plasmid-Mediated Resistance Accumulation in a Carbapenemase-Producing Klebsiella quasipneumoniae from Patients and the Environment
A. Mathers, A. Sheppard, N. Stoesser, D. Crook +4 more
2019Open Forum Infectious Diseases0 citations Open access
Semantic Scholar
Klebsiella quasipneumonaiae provides a window into carbapenemase gene transfer, plasmid rearrangements and nosocomial acquisition from the hospital environment
A. Mathers, D. Crook, A. Vaughan, Katie E. Barry +7 more
2018bioRxiv0 citations Open access
Semantic Scholar
Complete Genome sequence of the nematicidal Bacillus thuringiensis MYBT18246
Jacqueline Hollensteiner, Anja Poehlein, C. Spröer, B. Bunk +4 more
2017Standards in Genomic Sciences0 citations Open access
Semantic Scholar
High rates of human faecal carriage of mcr-1-positive multi-drug resistant isolates emerge in China in association with successful plasmid families
Lan-Lan Zhong, H. Phan, Xi Huang, Karina Doris-Vihta +16 more
2017bioRxiv0 citations Open access
Semantic Scholar
Capsular typing method for Streptococcus agalactiae using whole 1 genome sequence data
A. Sheppard, A. Vaughan, N. Jones, P. Turner +9 more
20160 citations
Semantic Scholar

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