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S. Vreugde · SciRah

Researcher profile · Semantic Scholar

S. Vreugde

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S. Vreugde — researcher profile on SciRah

h-index: 41
Works: 239
Citations: 6,840

Most-cited papers

Pharokka: a fast scalable bacteriophage annotation tool
G. Bouras, R. Nepal, Ghais Houtak, A. Psaltis +2 more
2022Bioinform.576 citations Open access
Semantic Scholar
How low can you go? Short-read polishing of Oxford Nanopore bacterial genome assemblies
G. Bouras, L. Judd, Rob Edwards, S. Vreugde +2 more
2024bioRxiv137 citations Open access
Semantic Scholar
Plassembler: an automated bacterial plasmid assembly tool
G. Bouras, A. Sheppard, V. Mallawaarachchi, S. Vreugde
2023Bioinform.87 citations Open access
Semantic Scholar
Hybracter: enabling scalable, automated, complete and accurate bacterial genome assemblies
G. Bouras, Ghais Houtak, R. Wick, Vijini Mallawaarachchi +6 more
2024Microbial Genomics78 citations Open access
Semantic Scholar
Protein structure-informed bacteriophage genome annotation with Phold
G. Bouras, Susanna R. Grigson, M. Mirdita, M. Heinzinger +10 more
2025bioRxiv77 citations Open access
Semantic Scholar
3D bioprinting of a cell-laden antibacterial polysaccharide hydrogel composite.
Hadi Rastin, M. Ramezanpour, Kamrul Hassan, Arash Mazinani +3 more
2021Carbohydrate Polymers61 citations
Semantic Scholar
Corynebacterium accolens Has Antimicrobial Activity against Staphylococcus aureus and Methicillin-Resistant S. aureus Pathogens Isolated from the Sinonasal Niche of Chronic Rhinosinusitis Patients
M. Menberu, Sha Liu, C. Cooksley, Andrew J. Hayes +3 more
2021Pathogens60 citations Open access
Semantic Scholar
Chronic Rhinosinusitis, S. aureus Biofilm and Secreted Products, Inflammatory Responses, and Disease Severity
Gohar Shaghayegh, C. Cooksley, M. Ramezanpour, P. Wormald +2 more
2022Biomedicines50 citations Open access
Semantic Scholar
Hybracter: Enabling Scalable, Automated, Complete and Accurate Bacterial Genome Assemblies
G. Bouras, Ghais Houtak, R. Wick, V. Mallawaarachchi +6 more
2023bioRxiv39 citations Open access
Semantic Scholar
APTC-C-SA01: A Novel Bacteriophage Cocktail Targeting Staphylococcus aureus and MRSA Biofilms
Sha Liu, K. Hon, G. Bouras, A. Psaltis +3 more
2022International Journal of Molecular Sciences37 citations Open access
Semantic Scholar
Converging 2D Nanomaterials and 3D Bioprinting Technology: State‐of‐the‐Art, Challenges, and Potential Outlook in Biomedical Applications
Hadi Rastin, Negar Mansouri, Tran T. Tung, Kamrul Hassan +6 more
2021Advanced Healthcare Materials33 citations
Semantic Scholar
Corynebacterium accolens inhibits Staphylococcus aureus induced mucosal barrier disruption
Shu-Man Huang, K. Hon, Catherine A. Bennett, Hua Hu +5 more
2022Frontiers in Microbiology30 citations Open access
Semantic Scholar
A comparison between full-length 16S rRNA Oxford nanopore sequencing and Illumina V3-V4 16S rRNA sequencing in head and neck cancer tissues
Kenny K. L. Yeo, J. Connell, G. Bouras, Eric Smith +8 more
2024bioRxiv29 citations Open access
Semantic Scholar
The bacteriology of diabetic foot ulcers and infections and incidence of Staphylococcus aureus Small Colony Variants.
James Lee, M. Mashayamombe, Tom P. Walsh, Beatrice Kuang +10 more
2023Journal of Medical Microbiology24 citations Open access
Semantic Scholar
Acoustic drug delivery to the maxillary sinus.
O. Pourmehran, M. Arjomandi, B. Cazzolato, Zhao Tian +4 more
2021International journal of pharmaceutics24 citations
Semantic Scholar
Staphylococcus aureus biofilm properties and chronic rhinosinusitis severity scores correlate positively with total CD4+ T‐cell frequencies and inversely with its Th1, Th17 and regulatory cell frequencies
Gohar Shaghayegh, C. Cooksley, G. Bouras, R. Nepal +6 more
2023Immunology23 citations Open access
Semantic Scholar
In vitro and in vivo evaluation of probiotic properties of Corynebacterium accolens isolated from the human nasal cavity.
M. Menberu, C. Cooksley, M. Ramezanpour, G. Bouras +3 more
2021Microbiology Research21 citations Open access
Semantic Scholar
Chronic rhinosinusitis patients display an aberrant immune cell localisation with enhanced S. aureus biofilm metabolic activity and biomass
Gohar Shaghayegh, C. Cooksley, G. Bouras, Beula Subashini Panchatcharam +6 more
2022Journal of Allergy and Clinical Immunology19 citations
Semantic Scholar
Numerical and Machine Learning Analysis of the Parameters Affecting the Regionally Delivered Nasal Dose of Nano- and Micro-Sized Aerosolized Drugs
A. Farnoud, H. Tofighian, Ingo Baumann, Kaveh Ahookhosh +8 more
2023Pharmaceuticals18 citations Open access
Semantic Scholar
Prophage: a crucial catalyst in infectious disease modulation.
R. Nepal, Ghais Houtak, P. Wormald, A. Psaltis +1 more
2022The Lancet Microbe18 citations Open access
Semantic Scholar
Characterising the allergic fungal rhinosinusitis microenvironment using full‐length 16S rRNA gene amplicon sequencing and fungal ITS sequencing
J. Connell, G. Bouras, K. Yeo, K. Fenix +5 more
2024Allergy. European Journal of Allergy and Clinical Immunology17 citations Open access
Semantic Scholar
The intra-host evolutionary landscape and pathoadaptation of persistent Staphylococcus aureus in chronic rhinosinusitis
Ghais Houtak, G. Bouras, R. Nepal, Gohar Shaghayegh +4 more
2023bioRxiv16 citations Open access
Semantic Scholar
APTC-EC-2A: A Lytic Phage Targeting Multidrug Resistant E. coli Planktonic Cells and Biofilms
K. Hon, Sha Liu, Sophie Camens, G. Bouras +3 more
2022Microorganisms16 citations Open access
Semantic Scholar
S. aureus biofilm metabolic activity correlates positively with patients' eosinophil frequencies and disease severity in chronic rhinosinusitis.
Gohar Shaghayegh, C. Cooksley, G. Bouras, Ghais Houtak +4 more
2023Microbes and infection13 citations Open access
Semantic Scholar
Colloidal silver against macrophage infections and biofilms of atypical mycobacteria
Sholeh Feizi, C. Cooksley, M. Ramezanpour, R. Nepal +3 more
2023Biometals13 citations Open access
Semantic Scholar
Advancements in Acoustic Drug Delivery for Paranasal Sinuses: A Comprehensive Review.
O. Pourmehran, Kavan Zarei, J. Pourchez, S. Vreugde +2 more
2023International journal of pharmaceutics13 citations Open access
Semantic Scholar
1S. aureus biofilm properties correlate with immune B cell subset frequencies and severity of chronic rhinosinusitis.
Gohar Shaghayegh, C. Cooksley, G. Bouras, Beula Subashini Panchatcharam +7 more
2024Clinical Immunology12 citations Open access
Semantic Scholar
Staphylococcal protein A modulates inflammation by inducing interferon signaling in human nasal epithelial cells
Hua Hu, Sha Liu, K. Hon, A. Psaltis +2 more
2022Inflammation Research12 citations Open access
Semantic Scholar
Evaluating nebulisation and nasal irrigation efficiency in post-operative chronic rhinosinusitis patients through computational fluid dynamics simulation
Oveis Pourmehran, A. Psaltis, S. Vreugde, Kavan Zarei +3 more
2025Comput. Methods Programs Biomed.11 citations Open access
Semantic Scholar
Genomic characterization of three bacteriophages targeting multidrug resistant clinical isolates of Escherichia, Klebsiella and Salmonella
R. Nepal, Ghais Houtak, Sumeena Karki, G. Dhungana +2 more
2022Archives of Microbiology11 citations Open access
Semantic Scholar
Proteomic analysis of nasal mucus samples of healthy patients and patients with chronic rhinosinusitis
S. Kao, A. Bassiouni, M. Ramezanpour, J. Finnie +6 more
202111 citations
Semantic Scholar
Staphylococcus aureus Biofilm-Secreted Factors Cause Mucosal Damage, Mast Cell Infiltration, and Goblet Cell Hyperplasia in a Rat Rhinosinusitis Model
Ghais Houtak, R. Nepal, G. Bouras, Gohar Shaghayegh +6 more
2024International Journal of Molecular Sciences10 citations Open access
Semantic Scholar
Chitogel following endoscopic sinus surgery promotes a healthy microbiome and reduces postoperative infections
A. Megow, Yazeed A. Alsuliman, G. Bouras, M. Menberu +3 more
2022International Forum of Allergy and Rhinology10 citations Open access
Semantic Scholar
Increased antibiotic resistance of Pseudomonas aeruginosa isolates from chronic rhinosinusitis patients grown in anaerobic conditions
J. Tuli, M. Ramezanpour, C. Cooksley, G. Bouras +6 more
2024Laryngoscope Investigative Otolaryngology9 citations Open access
Semantic Scholar
Identification of consensus head and neck cancer-associated microbiota signatures: a systematic review and meta-analysis of 16S rRNA and The Cancer Microbiome Atlas datasets.
K. Yeo, Runhao Li, Fangmeinuo Wu, G. Bouras +7 more
2024Journal of Medical Microbiology9 citations Open access
Semantic Scholar
Development of novel iron(III) crosslinked bioinks comprising carboxymethyl cellulose, xanthan gum, and hyaluronic acid for soft tissue engineering applications.
Hien-Phuong Le, Kamrul Hassan, M. Ramezanpour, Jonathan A. Campbell +3 more
2024Journal of materials chemistry. B9 citations Open access
Semantic Scholar
Functional mgrA Influences Genetic Changes within a Staphylococcus aureus Cell Population over Time
James Lee, M. Carda-Diéguez, M. Žiemytė, S. Vreugde +6 more
2022Journal of Bacteriology9 citations Open access
Semantic Scholar
Deferiprone and Gallium-Protoporphyrin Chitogel as an antimicrobial treatment: Preclinical studies demonstrating antimicrobial activity for S. aureus infected cutaneous wounds.
T. Kennewell, H. Haidari, S. Mashtoub, G. Howarth +4 more
2024International Journal of Biological Macromolecules8 citations Open access
Semantic Scholar
Evaluation of mucosal barrier disruption due to Staphylococcus lugdunensis and Staphylococcus epidermidis exoproteins in patients with chronic rhinosinusitis
M. Ramezanpour, Sholeh Feizi, Hashan Dilendra Paththini Arachchige, G. Bouras +5 more
2024International Forum of Allergy and Rhinology8 citations
Semantic Scholar
Preclinical characterization and in silico safety assessment of three virulent bacteriophages targeting carbapenem-resistant uropathogenic Escherichia coli
G. Dhungana, R. Nepal, Ghais Houtak, G. Bouras +2 more
2024International Microbiology8 citations Open access
Semantic Scholar
Wound healing in endoscopic sinus surgery: Phase 1 clinical trial evaluating the role of Chitogel with adjuvants
R. S. Vediappan, Catherine A. Bennett, C. Cooksley, A. Bassiouni +7 more
2022Clinical Otolaryngology8 citations Open access
Semantic Scholar
Cell Line-Dependent Internalization, Persistence, and Immunomodulatory Effects of Staphylococcus aureus in Triple-Negative Breast Cancer
Sima Kianpour Rad, Runhao Li, Kenny K. L. Yeo, C. Cooksley +8 more
2025Cancers7 citations Open access
Semantic Scholar
Enhanced phylogenetic insights into the microbiome of chronic rhinosinusitis through the novel application of long read 16S rRNA gene amplicon sequencing.
J. Connell, K. Yeo, G. Bouras, A. Bassiouni +5 more
2024Rhinology7 citations
Semantic Scholar
Deferiprone-gallium-protoporphyrin (IX): A promising treatment modality against Mycobacterium abscessus.
Sholeh Feizi, Muhammed Awad, R. Nepal, C. Cooksley +3 more
2023Tuberculosis7 citations Open access
Semantic Scholar
Electroconductive Antibacterial Bioinks Enable Electrical Stimulation Enhancement of Proliferation and Elongation of Human Skin Fibroblasts.
Hien-Phuong Le, Kamrul Hassan, Mohammad Alsenaide, K. Purasinhala +6 more
2025ACS Biomaterials Science & Engineering6 citations
Semantic Scholar
Deferiprone-Gallium-Protoporphyrin Chitogel Decreases Pseudomonas aeruginosa Biofilm Infection without Impairing Wound Healing
T. Kennewell, Hanif Haidari, S. Mashtoub, G. Howarth +6 more
2024Materials6 citations Open access
Semantic Scholar
A φSa3int (NM3) Prophage Domestication in Staphylococcus aureus Leads to Increased Virulence Through Human Immune Evasion
R. Nepal, Ghais Houtak, G. Bouras, Sholeh Feizi +6 more
2025MedComm5 citations Open access
Semantic Scholar
Differential proteomic expression in non-functional pituitary neuroendocrine tumours and pituitary glands.
N. G. Candy, M. Ramezanpour, G. Bouras, N. Chegeni +6 more
2024Rhinology5 citations
Semantic Scholar
Is Short-Read 16S rRNA Sequencing of Oral Microbiome Sampling a Suitable Diagnostic Tool for Head and Neck Cancer?
Kenny K. L. Yeo, Fangmeinuo Wu, Runhao Li, Eric Smith +5 more
2024Pathogens5 citations Open access
Semantic Scholar
Promoting the Efficacy of Deferiprone-Gallium-Protoporphyrin (IX) against Mycobacterium abscessus Intracellular Infection with Lipid Liquid Crystalline Nanoparticles.
Sholeh Feizi, Muhammed Awad, M. Ramezanpour, C. Cooksley +6 more
2024ACS Applied Materials and Interfaces5 citations
Semantic Scholar

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