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Fedor Kouzine · SciRah

Researcher profile · Semantic Scholar

Fedor Kouzine

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Fedor Kouzine — researcher profile on SciRah

h-index: 20
Works: 39
Citations: 2,558

Most-cited papers

Transcription dependent dynamic supercoiling is a short-range genomic force
Fedor Kouzine, Ashutosh Gupta, Laura Baranello, Damian Wójtowicz +4 more
2013Nature Structural &Molecular Biology316 citations Open access
Semantic Scholar
The functional response of upstream DNA to dynamic supercoiling in vivo
Fedor Kouzine, S. Sanford, Zichrini Elisha-Feil, D. Levens
2008Nature Structural &Molecular Biology305 citations
Semantic Scholar
RNA Polymerase II Regulates Topoisomerase 1 Activity to Favor Efficient Transcription
Laura Baranello, Damian Wójtowicz, Kai-Rong Cui, B. N. Devaiah +16 more
2016Cell272 citations Open access
Semantic Scholar
Permanganate/S1 nuclease footprinting reveals non-B DNA structures with regulatory potential across a mammalian genome
Fedor Kouzine, Damian Wójtowicz, Laura Baranello, Arito Yamane +7 more
2017Cell Systems200 citations Open access
Semantic Scholar
The dynamic response of upstream DNA to transcription-generated torsional stress
Fedor Kouzine, Ju-Hong Liu, S. Sanford, Hye-Jung Chung +1 more
2004Nature Structural &Molecular Biology164 citations Open access
Semantic Scholar
The FUSE/FBP/FIR/TFIIH system is a molecular machine programming a pulse of c‐myc expression
Ju-Hong Liu, Fedor Kouzine, Z. Nie, Hye-Jung Chung +4 more
2006EMBO Journal158 citations Open access
Semantic Scholar
Global regulation of promoter melting in naïve lymphocytes
Fedor Kouzine, Damian Wójtowicz, Arito Yamane, W. Resch +13 more
2013Cell147 citations Open access
Semantic Scholar
Genome scale patterns of supercoiling in a bacterial chromosome
Avantika Lal, Amlanjyoti Dhar, Andrei Trostel, Fedor Kouzine +2 more
2016Nature Communications118 citations Open access
Semantic Scholar
The importance of being supercoiled: how DNA mechanics regulate dynamic processes
Laura Baranello, David Levens, Ashutosh Gupta, Fedor Kouzine
2012Biochimica et Biophysica Acta101 citations Open access
Semantic Scholar
MYC function and regulation in physiological perspective
R. Jha, Fedor Kouzine, D. Levens
2023Frontiers in Cell and Developmental Biology96 citations Open access
Semantic Scholar
Supercoil-driven DNA structures regulate genetic transactions.
Fedor Kouzine, David Levens
2007Frontiers in Bioscience94 citations Open access
Semantic Scholar
MYC assembles and stimulates topoisomerases 1 and 2 in a “topoisome”
Subhendu K. Das, Vladislav Kuzin, Donald P. Cameron, S. Sanford +12 more
2021Molecules and Cells90 citations Open access
Semantic Scholar
ChIP bias as a function of cross-linking time
Laura Baranello, Fedor Kouzine, S. Sanford, David Levens
2015Chromosome Research84 citations Open access
Semantic Scholar
DNA Break Mapping Reveals Topoisomerase II Activity Genome-Wide
Laura Baranello, Fedor Kouzine, Damian Wójtowicz, Kai-Rong Cui +3 more
2014International Journal of Molecular Sciences81 citations Open access
Semantic Scholar
DNA topology and transcription
Fedor Kouzine, D. Levens, Laura Baranello
2014The Nucleus52 citations Open access
Semantic Scholar
Mechanical determinants of chromatin topology and gene expression
R. Jha, D. Levens, Fedor Kouzine
2022The Nucleus39 citations Open access
Semantic Scholar
DNA Topoisomerases
Laura Baranello, Fedor Kouzine, David Levens
2013Transcription31 citations Open access
Semantic Scholar
Topoisomerase 1 activity during mitotic transcription favors the transition from mitosis to G1.
Anika Wiegard, Vladislav Kuzin, Donald P. Cameron, J. Grosser +12 more
2021Molecules and Cells27 citations Open access
Semantic Scholar
CTCF and cohesin cooperate to organize the 3D structure of the mammalian genome
Laura Baranello, Fedor Kouzine, David Levens
2014Proceedings of the National Academy of Sciences of the United States of America25 citations Open access
Semantic Scholar
Single-molecule visualization of the effects of ionic strength and crowding on structure-mediated interactions in supercoiled DNA molecules
Shane Scott, Cynthia Shaheen, Brendon McGuinness, K. Metera +4 more
2019bioRxiv20 citations Open access
Semantic Scholar
Hierarchical mechanisms build the DNA-binding specificity of FUSE binding protein
L. Benjamin, Hye-Jung Chung, S. Sanford, Fedor Kouzine +2 more
2008Proceedings of the National Academy of Sciences of the United States of America20 citations Open access
Semantic Scholar
Topoisomerase Regulation of Cancer Gene Expression.
Laura Baranello, Fedor Kouzine, D. Levens
2025Annual Review of Biochemistry19 citations Open access
Semantic Scholar
Controlling gene expression by DNA mechanics: emerging insights and challenges
D. Levens, Laura Baranello, Fedor Kouzine
2016Biophysical Reviews17 citations Open access
Semantic Scholar
Controlling gene expression by DNA mechanics: emerging insights and challenges
D. Levens, Laura Baranello, Fedor Kouzine
2016Biophysical Reviews16 citations Open access
Semantic Scholar
Supplementary Information ( SI ) : Visualizing structure-mediated interactions in supercoiled DNA molecules
Shane Scott, Zhi-Min Xu, Fedor Kouzine, Daniel J. Berard +9 more
201813 citations
Semantic Scholar
In Vivo Chemical Probing for G-Quadruplex Formation
Fedor Kouzine, Damian Wójtowicz, Arito Yamane, R. Casellas +2 more
2019Methods in molecular biology12 citations Open access
Semantic Scholar
Visualizing structure-mediated interactions in supercoiled DNA molecules
Shane Scott, Zhi-Min Xu, Fedor Kouzine, Daniel J. Berard +9 more
2018bioRxiv12 citations Open access
Semantic Scholar
The Texture of Chromatin
Fedor Kouzine, D. Levens
2019Cell9 citations Open access
Semantic Scholar
The Use of Psoralen Photobinding to Study Transcription-Induced Supercoiling
Fedor Kouzine, Laura Baranello, D. Levens
2018Methods in molecular biology9 citations Open access
Semantic Scholar
Mapping DNA Breaks by Next-Generation Sequencing
Laura Baranello, Fedor Kouzine, Damian Wójtowicz, Kai-Rong Cui +4 more
2018Methods in molecular biology7 citations
Semantic Scholar
Non-equilibrium structural dynamics of supercoiled DNA plasmids exhibits asymmetrical relaxation
Cynthia Shaheen, Cameron G. Hastie, K. Metera, Shane Scott +9 more
2022Nucleic Acids Research5 citations Open access
Semantic Scholar
Dynamic Supercoiling Sponsors Transcription Amplification by MYC
R. Jha, Fedor Kouzine, Bo Wang, James D. Phelan +3 more
2026bioRxiv1 citations
Semantic Scholar
3 – DNA Supercoiling(omics)
Laura Baranello, D. Levens, Fedor Kouzine
20181 citations
Semantic Scholar
Drosophila Rumpelstiltskin regulates Polycomb cis and trans interactions and Homie barrier activity
Savanna Lyda, C. McManus, Juan Manuel Caravaca, Da Yang +6 more
2026Epigenetics & Chromatin0 citations Open access
Semantic Scholar
Detection of Z-DNA Structures in Supercoiled Genome
Fedor Kouzine, Damian Wójtowicz, T. Przytycka, David Levens
2023Methods in molecular biology0 citations
Semantic Scholar
The Role of DNA Topology and Conformation in Gene Regulation, In Vivo
D. Levens, Fedor Kouzine, Laura Baranello
20180 citations Open access
Semantic Scholar
Single Molecule Visualization of Topology-Mediated Interactions in Supercoiled DNA
Shane Scott, Zhi-Min Xu, Fedor Kouzine, Daniel J. Berard +8 more
20170 citations Open access
Semantic Scholar
Controlling gene expression by DNA mechanics: emerging insights and challenges
D. Levens, Laura Baranello, Fedor Kouzine
2016Biophysical Reviews0 citations Open access
Semantic Scholar
Controlling gene expression by DNA mechanics: emerging insights and challenges
D. Levens, Laura Baranello, Fedor Kouzine
2016Biophysical Reviews0 citations Open access
Semantic Scholar

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