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J. Mell · SciRah

Researcher profile · Semantic Scholar

J. Mell

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J. Mell — researcher profile on SciRah

h-index: 23
Works: 76
Citations: 2,029

Most-cited papers

Genome-wide mapping and assembly of structural variant breakpoints in the mouse genome.
A. Quinlan, Royden A. Clark, S. Sokolova, Mitchell L. Leibowitz +4 more
2010Genome Research296 citations Open access
Semantic Scholar
Art and the brain
J. Mell, S. Howard, B. Miller
2003Neurology245 citations
Semantic Scholar
Natural Competence and the Evolution of DNA Uptake Specificity
J. Mell, R. Redfield
2014Journal of Bacteriology197 citations Open access
Semantic Scholar
Species-level bacterial community profiling of the healthy sinonasal microbiome using Pacific Biosciences sequencing of full-length 16S rRNA genes
J. Earl, N. Adappa, J. Król, Archana S. Bhat +10 more
2018Microbiome165 citations Open access
Semantic Scholar
Transformation of Natural Genetic Variation into Haemophilus Influenzae Genomes
J. Mell, S. Shumilina, Ira M. Hall, R. Redfield
2011PLoS Pathogens85 citations Open access
Semantic Scholar
Seventeen Sxy-Dependent Cyclic AMP Receptor Protein Site-Regulated Genes Are Needed for Natural Transformation in Haemophilus influenzae
S. Sinha, J. Mell, R. Redfield
2012Journal of Bacteriology63 citations Open access
Semantic Scholar
Defining the DNA uptake specificity of naturally competent Haemophilus influenzae cells
J. Mell, Ira M. Hall, R. Redfield
2012Nucleic Acids Research59 citations Open access
Semantic Scholar
Lung transcriptional unresponsiveness and loss of early influenza virus control in infected neonates is prevented by intranasal Lactobacillus rhamnosus GG
Ogan K. Kumova, Adam J. Fike, Jillian L Thayer, Linda T Nguyen +6 more
2019PLoS Pathogens56 citations Open access
Semantic Scholar
Transcriptome-Wide Analysis of Hepatitis B Virus-Mediated Changes to Normal Hepatocyte Gene Expression
J. Lamontagne, J. Mell, Michael J. Bouchard
2016PLoS Pathogens50 citations Open access
Semantic Scholar
Phenotypic diversity and genotypic flexibility of Burkholderia cenocepacia during long-term chronic infection of cystic fibrosis lungs
A. Lee, S. Flibotte, S. Sinha, Adrianna Paiero +6 more
2017Genome Research47 citations Open access
Semantic Scholar
Extensive Cotransformation of Natural Variation into Chromosomes of Naturally Competent Haemophilus influenzae
J. Mell, Jae Yun Lee, M. Firme, S. Sinha +1 more
2014G3: Genes, Genomes, Genetics44 citations Open access
Semantic Scholar
Antagonistic Pleiotropy in the Bifunctional Surface Protein FadL (OmpP1) during Adaptation of Haemophilus influenzae to Chronic Lung Infection Associated with Chronic Obstructive Pulmonary Disease
J. Moleres, Ariadna Fernández-Calvet, R. Ehrlich, S. Martí +11 more
2018mBio41 citations Open access
Semantic Scholar
The availability of purine nucleotides regulates natural competence by controlling translation of the competence activator Sxy
S. Sinha, J. Mell, R. Redfield
2013Molecular Microbiology38 citations Open access
Semantic Scholar
Natural Transformation of Gallibacterium anatis
B. Kristensen, S. Sinha, J. Boyce, A. Bojesen +2 more
2012Applied and Environmental Microbiology37 citations Open access
Semantic Scholar
HIV-1 Genetic Variation Resulting in the Development of New Quasispecies Continues to Be Encountered in the Peripheral Blood of Well-Suppressed Patients
W. Dampier, M. Nonnemacher, J. Mell, J. Earl +9 more
2016PLoS ONE35 citations Open access
Semantic Scholar
Molecular evolution under increasing transposable element burden in Drosophila: A speed limit on the evolutionary arms race
D. M. Castillo, J. Mell, Kimberly S. Box, J. Blumenstiel
2011BMC Evolutionary Biology35 citations Open access
Semantic Scholar
Designing broad-spectrum anti-HIV-1 gRNAs to target patient-derived variants
W. Dampier, N. Sullivan, Cheng-Han Chung, J. Mell +2 more
2017Scientific Reports33 citations Open access
Semantic Scholar
Characterization of Nontypable Haemophilus influenzae Isolates Recovered from Adult Patients with Underlying Chronic Lung Disease Reveals Genotypic and Phenotypic Traits Associated with Persistent Infection
Junkal Garmendia, C. Viadas, L. Calatayud, J. Mell +7 more
2014PLoS ONE33 citations Open access
Semantic Scholar
Broad-Spectrum and Personalized Guide RNAs for CRISPR/Cas9 HIV-1 Therapeutics
W. Dampier, N. Sullivan, J. Mell, V. Pirrone +13 more
2018AIDS Research and Human Retroviruses32 citations Open access
Semantic Scholar
Maf1‐dependent transcriptional regulation of tRNAs prevents genomic instability and is associated with extended lifespan
Mihir Shetty, Chiaki Noguchi, Sydney Wilson, Esteban Martinez +4 more
2019Aging Cell31 citations Open access
Semantic Scholar
Novel gRNA design pipeline to develop broad-spectrum CRISPR/Cas9 gRNAs for safe targeting of the HIV-1 quasispecies in patients
N. Sullivan, W. Dampier, Cheng-Han Chung, A. Allen +16 more
2019Scientific Reports29 citations Open access
Semantic Scholar
Genome rearrangements induce biofilm formation in Escherichia coli C – an old model organism with a new application in biofilm research
J. Król, Donald C. Hall, Sergey V. Balashov, Steven Pastor +8 more
2019BMC Genomics26 citations Open access
Semantic Scholar
Learning, visualizing and exploring 16S rRNA structure using an attention-based deep neural network
Zheng-Qiao Zhao, Stephen Woloszynek, Felix Agbavor, J. Mell +2 more
2020bioRxiv24 citations Open access
Semantic Scholar
Genetic Adaptation and Acquisition of Macrolide Resistance in Haemophilus spp. during Persistent Respiratory Tract Colonization in Chronic Obstructive Pulmonary Disease (COPD) Patients Receiving Long-Term Azithromycin Treatment
A. Carrera-Salinas, A. González-Díaz, R. Ehrlich, D. Berbel +11 more
2022Microbiology spectrum23 citations Open access
Semantic Scholar
Identification and Characterization of msf, a Novel Virulence Factor in Haemophilus influenzae
Jennifer M. Kress-Bennett, N. Hiller, Rory A. Eutsey, Evan Powell +9 more
2016PLoS ONE23 citations Open access
Semantic Scholar
Transformed Recombinant Enrichment Profiling Rapidly Identifies HMW1 as an Intracellular Invasion Locus in Haemophilus influenzae
J. Mell, C. Viadas, J. Moleres, S. Sinha +6 more
2016PLoS Pathogens21 citations Open access
Semantic Scholar
Yeast as a Model Genetic Organism
J. Mell, Sean M. Burgess
200321 citations
Semantic Scholar
Phase Variation in HMW1A Controls a Phenotypic Switch in Haemophilus influenzae Associated with Pathoadaptation during Persistent Infection
Ariadna Fernández-Calvet, Begoña Euba, Celia Gil-Campillo, Arancha Catalan-Moreno +12 more
2021mBio19 citations Open access
Semantic Scholar
Exploring thematic structure and predicted functionality of 16S rRNA amplicon data
Stephen Woloszynek, J. Mell, Zheng-Qiao Zhao, Gideon Simpson +2 more
2019PLoS ONE19 citations Open access
Semantic Scholar
Complete Genome Sequence of Haemophilus influenzae Strain 375 from the Middle Ear of a Pediatric Patient with Otitis Media
J. Mell, S. Sinha, Sergey V. Balashov, C. Viadas +5 more
2014Genome Announcements18 citations Open access
Semantic Scholar
Mitochondrially targeted proximity biotinylation and proteomic analysis in Plasmodium falciparum
I. M. Lamb, Kelly T. Rios, A. Shukla, Avantika I. Ahiya +5 more
2022bioRxiv14 citations Open access
Semantic Scholar
Customized optical mapping by CRISPR–Cas9 mediated DNA labeling with multiple sgRNAs
Heba Z. Abid, Eleanor Young, Jennifer McCaffrey, Kaitlin Raseley +5 more
2020Nucleic Acids Research14 citations Open access
Semantic Scholar
Engineering Human Microbiota: Influencing Cellular and Community Dynamics for Therapeutic Applications.
Stephen Woloszynek, S. Pastor, J. Mell, N. Nandi +2 more
2016International Review of Cell and Molecular Biology14 citations
Semantic Scholar
SARS-CoV-2 variants associated with vaccine breakthrough in the Delaware Valley through summer 2021
Andrew D. Marques, S. Sherrill-Mix, J. Everett, Shantan Reddy +34 more
2021medRxiv12 citations Open access
Semantic Scholar
Maf1 limits RNA polymerase III-directed transcription to preserve genomic integrity and extend lifespan
Chiaki Noguchi, Lucy Wang, Mihir Shetty, J. Mell +2 more
2021Cell Cycle11 citations Open access
Semantic Scholar
Influenza virus-induced type I interferons disrupt alveolar epithelial repair and tight junction integrity in the developing lung
Abigail P Onufer, J. Mell, L. Cort, Abhishek S Rao +2 more
2025Mucosal Immunology10 citations Open access
Semantic Scholar
Comparative Analysis of Emerging B.1.1.7+E484K SARS-CoV-2 isolates from Pennsylvania
A. Moustafa, Colleen M. Bianco, Lidiya Denu, Azad Ahmed +11 more
2021bioRxiv10 citations Open access
Semantic Scholar
The methyltransferase enzymes KMT2D, SETD1B, and ASH1L are key mediators of both metabolic and epigenetic changes during cellular senescence
Timothy Nacarelli, Ashley Azar, Manali Potnis, G. Johannes +5 more
2022Molecular Biology of the Cell9 citations Open access
Semantic Scholar
Panel 3: Genomics, Precision Medicine and Targeted Therapies
R. L. Santos-Cortez, M. Bhutta, J. Earl, L. Hafrén +6 more
2019International Journal of Pediatric Otorhinolaryngology9 citations Open access
Semantic Scholar
Species-Level Profiling of Ixodes pacificus Bacterial Microbiomes Reveals High Variability Across Short Spatial Scales at Different Taxonomic Resolutions
Kayla M. Socarras, J. Earl, J. Król, Archana S. Bhat +9 more
2021Genetic Testing and Molecular Biomarkers7 citations Open access
Semantic Scholar
Uncovering thematic structure to link co-occurring taxa and predicted functional content in 16S rRNA marker gene surveys
Stephen Woloszynek, J. Mell, Gideon Simpson, Michael P. O’Connor +1 more
2017bioRxiv7 citations Open access
Semantic Scholar
Transition of Serotype 35B Pneumococci From Commensal to Prevalent Virulent Strain in Children
N. Fuji, M. Pichichero, R. Ehrlich, J. Mell +2 more
2021Frontiers in Cellular and Infection Microbiology6 citations Open access
Semantic Scholar
Distinct patterns of gene expression in human cardiac fibroblasts exposed to rapamycin treatment or methionine restriction
Ashley Azar, Ibiyonu Lawrence, S. Jofre, J. Mell +1 more
2018Annals of the New York Academy of Sciences6 citations
Semantic Scholar
Epigenetic control of the ferric uptake regulator (Fur) and fumarate nitrate reductase (FNR) master regulatory proteins contributes to Haemophilus influenzae survival during lung infection
Celia Gil-Campillo, Begoña Euba, Irene Rodriguez‐Arce, David San León +8 more
2025mBio5 citations Open access
Semantic Scholar
Phylogenomics of Nontuberculous Mycobacteria Respiratory Infections in People with Cystic Fibrosis
Nicholas Bolden, J. Mell, J. Logan, P. Planet
2023Paediatric Respiratory Reviews5 citations Open access
Semantic Scholar
Pre-vaccination frequency of circulatory Tfh is associated with robust immune response to TV003 dengue vaccine
Abdullah M Izmirly, A. Pelletier, Jennifer Connors, Bhavani Taramangalam +10 more
2021bioRxiv5 citations Open access
Semantic Scholar
Genome-wide analysis of DNA uptake across the outer membrane of naturally competent Haemophilus influenzae
Marcelo Mora, J. Mell, G. Ehrlich, R. Ehrlich +1 more
2020iScience5 citations Open access
Semantic Scholar
Budding Yeast Saccharomyces Cerevisiae as a Model Genetic Organism
Sean M. Burgess, T. Powers, J. Mell
20175 citations
Semantic Scholar
Complete Genome Sequence of Aggregatibacter actinomycetemcomitans Strain IDH781
Anthony C May, R. Ehrlich, Sergey V. Balashov, G. Ehrlich +5 more
2016Genome Announcements5 citations Open access
Semantic Scholar
Biomarkers of HIV Susceptibility and Disease Progression
V. Pirrone, J. Mell, Benjamin A. Janto, B. Wigdahl
2014EBioMedicine4 citations Open access
Semantic Scholar

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G. Ehrlich×15
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R. Ehrlich×7
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Junkal Garmendia

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