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J. Earl · SciRah

Researcher profile · Semantic Scholar

J. Earl

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J. Earl — researcher profile on SciRah

h-index: 18
Works: 36
Citations: 1,346

Most-cited papers

Meta-omic characterization of the marine invertebrate microbial consortium that produces the chemotherapeutic natural product ET-743
Christopher M. Rath, Benjamin A. Janto, J. Earl, Azad Ahmed +12 more
2011ACS Chemical Biology203 citations Open access
Semantic Scholar
Species-level bacterial community profiling of the healthy sinonasal microbiome using Pacific Biosciences sequencing of full-length 16S rRNA genes
J. Earl, N. Adappa, J. Król, Archana S. Bhat +10 more
2018Microbiome165 citations Open access
Semantic Scholar
Comparative Genomic Analyses of 17 Clinical Isolates of Gardnerella vaginalis Provide Evidence of Multiple Genetically Isolated Clades Consistent with Subspeciation into Genovars
Azad Ahmed, J. Earl, A. Retchless, S. Hillier +13 more
2012Journal of Bacteriology157 citations Open access
Semantic Scholar
Generation of Genic Diversity among Streptococcus pneumoniae Strains via Horizontal Gene Transfer during a Chronic Polyclonal Pediatric Infection
N. Hiller, Azad Ahmed, Evan Powell, Darren P. Martin +11 more
2010PLoS Pathogens149 citations Open access
Semantic Scholar
The Distributed Genome Hypothesis as a Rubric for Understanding Evolution in situ During Chronic Bacterial Biofilm Infectious Processes
G. Ehrlich, Azad Ahmed, J. Earl, N. L. Hiller +5 more
2010FEMS Immunology & Medical Microbiology100 citations Open access
Semantic Scholar
The genome of alkaliphilic Bacillus pseudofirmus OF4 reveals adaptations that support the ability to grow in an external pH range from 7.5 to 11.4
Benjamin A. Janto, Azad Ahmed, M. Ito, Jun Liu +18 more
2011Environmental Microbiology85 citations Open access
Semantic Scholar
Comparative analysis and supragenome modeling of twelve Moraxella catarrhalis clinical isolates
J. Davie, J. Earl, S. D. de Vries, Azad Ahmed +8 more
2011BMC Genomics67 citations Open access
Semantic Scholar
Comparative supragenomic analyses among the pathogens Staphylococcus aureus, Streptococcus pneumoniae, and Haemophilus influenzae Using a modification of the finite supragenome model
Robert J. Boissy, Azad Ahmed, Benjamin A. Janto, J. Earl +12 more
2011BMC Genomics59 citations Open access
Semantic Scholar
Comparing culture and molecular methods for the identification of microorganisms involved in necrotizing soft tissue infections
Vibeke Rudkjøbing, T. R. Thomsen, Yi-Juan Xu, R. Melton-Kreft +8 more
2016BMC Infectious Diseases49 citations Open access
Semantic Scholar
HIV-1 Genetic Variation Resulting in the Development of New Quasispecies Continues to Be Encountered in the Peripheral Blood of Well-Suppressed Patients
W. Dampier, M. Nonnemacher, J. Mell, J. Earl +9 more
2016PLoS ONE35 citations Open access
Semantic Scholar
The Tsk2/+ mouse fibrotic phenotype is due to a gain-of-function mutation in the PIIINP segment of the Col3a1 gene
Kristen B. Long, Zhenghui Li, Chelsea M. Burgwin, S. Choe +9 more
2014Journal of Investigative Dermatology34 citations Open access
Semantic Scholar
Comparative Genomic Analyses of the Moraxella catarrhalis Serosensitive and Seroresistant Lineages Demonstrate Their Independent Evolution
J. Earl, S. D. de Vries, Azad Ahmed, Evan Powell +8 more
2016Genome Biology and Evolution28 citations Open access
Semantic Scholar
Nontypeable Haemophilus influenzae Genetic Islands Associated with Chronic Pulmonary Infection
Lixin Zhang, Jing-Ping Xie, Mayuri Patel, Arsala Bakhtyar +7 more
2012PLoS ONE27 citations Open access
Semantic Scholar
Genome rearrangements induce biofilm formation in Escherichia coli C – an old model organism with a new application in biofilm research
J. Król, Donald C. Hall, Sergey V. Balashov, Steven Pastor +8 more
2019BMC Genomics26 citations Open access
Semantic Scholar
Differences in Genotype and Virulence among Four Multidrug-Resistant Streptococcus pneumoniae Isolates Belonging to the PMEN1 Clone
N. Hiller, Rory A. Eutsey, Evan Powell, J. Earl +18 more
2011PLoS ONE26 citations Open access
Semantic Scholar
Evidence supportive of a bacterial component in the etiology for Alzheimer’s disease and for a temporal-spatial development of a pathogenic microbiome in the brain
Yves Moné, J. Earl, Jarosław E. Król, Azad Ahmed +3 more
2023Frontiers in Cellular and Infection Microbiology21 citations Open access
Semantic Scholar
Nasopharyngeal microbiome composition associated with Streptococcus pneumoniae colonization suggests a protective role of Corynebacterium in young children
L. Xu, J. Earl, M. Pichichero
2021PLoS ONE20 citations Open access
Semantic Scholar
Design and validation of a supragenome array for determination of the genomic content of Haemophilus influenzae isolates
Rory A. Eutsey, N. Hiller, J. Earl, Benjamin A. Janto +13 more
2013BMC Genomics19 citations Open access
Semantic Scholar
Whole genome sequencing of Streptomyces actuosus ISP-5337, Streptomyces sioyaensis B-5408, and Actinospica acidiphila B-2296 reveals secondary metabolomes with antibiotic potential
H. M. Majer, R. Ehrlich, Azad Ahmed, J. Earl +2 more
2021Biotechnology Reports15 citations Open access
Semantic Scholar
Virulence Potential and Genome-Wide Characterization of Drug Resistant Streptococcus pneumoniae Clones Selected In Vivo by the 7-Valent Pneumococcal Conjugate Vaccine
N. Frazão, N. L. Hiller, Evan Powell, J. Earl +5 more
2013PLoS ONE15 citations Open access
Semantic Scholar
Nasopharyngeal microbiome analyses in otitis-prone and otitis-free children.
L. Xu, J. Earl, P. Bajorski, E. González +1 more
2021International Journal of Pediatric Otorhinolaryngology12 citations
Semantic Scholar
Panel 3: Genomics, Precision Medicine and Targeted Therapies
R. L. Santos-Cortez, M. Bhutta, J. Earl, L. Hafrén +6 more
2019International Journal of Pediatric Otorhinolaryngology9 citations Open access
Semantic Scholar
HIV- Bidirectional Encoder Representations From Transformers: A Set of Pretrained Transformers for Accelerating HIV Deep Learning Tasks
W. Dampier, R. Link, J. Earl, Mackenzie E. Collins +4 more
2022Frontiers in Virology7 citations Open access
Semantic Scholar
Species-Level Profiling of Ixodes pacificus Bacterial Microbiomes Reveals High Variability Across Short Spatial Scales at Different Taxonomic Resolutions
Kayla M. Socarras, J. Earl, J. Król, Archana S. Bhat +9 more
2021Genetic Testing and Molecular Biomarkers7 citations Open access
Semantic Scholar
Analysis Methods for Shotgun Metagenomics
Stephen Woloszynek, Zheng-Qiao Zhao, Gregory Ditzler, Jacob R. Price +7 more
20184 citations
Semantic Scholar
Development and Validation of an Haemophilus influenzae Supragenome Hybridization (SGH) Array for Transcriptomic Analyses
Benjamin A. Janto, N. Hiller, Rory A. Eutsey, Margaret E. Dahlgren +5 more
2014PLoS ONE3 citations Open access
Semantic Scholar
1147 APPLICATION OF STATE-OF-THE-ART METHODS TO SEARCH FOR MICROBIAL CONTRIBUTIONS TO THE ETIOLOGY OF UROLOGICAL CHRONIC PELVIC PAIN SYNDROME (UCPPS)
J. Nickel, Alisa J. Stephens, Jun Chen, R. Melton-Kreft +7 more
20133 citations
Semantic Scholar
Evidence for the Existence of a Bacterial Etiology for Alzheimer’s Disease and for a Temporal-Spatial Development of a Pathogenic Microbiome in the Brain
Yves Moné, J. Earl, Jarosław E. Król, Azad Ahmed +3 more
2022bioRxiv2 citations Open access
Semantic Scholar
MP77-03 THE MICROBIOME OF HUNNER LESIONS IN INTERSTITIAL CYSTITIS/BLADDER PAIN SYNDROME (IC/BPS)
J. Nickel, Garth Erhlich, R. Doiron, Kerri-Lynn Kelly +1 more
20201 citations
Semantic Scholar
8-24-2018 Interaction between the microbiome and TP 53 in human lung cancer
K. Greathouse, J. White, Ashely J. Vargas, V. Bliskovsky +29 more
20181 citations
Semantic Scholar
Design and validation of a supragenome array for determination of the genomic content of Haemophilus influenzae isolates
Rory A. Eutsey, N. Hiller, J. Earl, Benjamin A. Janto +13 more
2013BMC Genomics1 citations Open access
Semantic Scholar
PD01-03 OUTCOMES AND FINANCIAL IMPACTS OF MINI PCNL IN STONES LARGER THAN 1.5 CENTIMETERS VERSUS PCNL
J. Fisher, Winston Crute, J. Earl, K. Reed +3 more
20200 citations
Semantic Scholar
Abstract 4925: Microbiome-TP53 gene interaction in human lung cancer
L. Greathouse, James A. White, V. Bliskovsky, A. J. Vargas +22 more
20170 citations Open access
Semantic Scholar
Genetic variation continues to occur in well-controlled HIV-1-infected patients
W. Dampier, M. Nonnemacher, J. Mell, J. Earl +8 more
20150 citations Open access
Semantic Scholar
Genome of alkaliphilic Bacillus pseudofirmus OF 4 reveals adaptations
Benjamin A. Janto, Azad Ahmed, M. Ito, Jun Liu +18 more
20110 citations
Semantic Scholar
The distributed genome hypothesis as a rubric for understanding evolution in situ during chronic bacterial biofilm infectious processes: Horizontal gene transfer in biofilms
Garth D. Ehrlich, Azad Ahmed, J. Earl, N. L. Hiller +5 more
20100 citations
Semantic Scholar

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