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J. Der · SciRah

Researcher profile · Semantic Scholar

J. Der

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J. Der — researcher profile on SciRah

h-index: 30
Works: 57
Citations: 7,617

Most-cited papers

One thousand plant transcriptomes and the phylogenomics of green plants
J. Leebens-Mack, M. Barker, E. Carpenter, M. Deyholos +190 more
2019Nature1,374 citations Open access
Semantic Scholar
Phylotranscriptomic analysis of the origin and early diversification of land plants
N. Wickett, S. Mirarab, Nam-phuong Nguyen, T. Warnow +38 more
2014Proceedings of the National Academy of Sciences of the United States of America1,148 citations Open access
Semantic Scholar
The Amborella Genome and the Evolution of Flowering Plants
V. A. Albert, W. B. Barbazuk, C. dePamphilis, J. Der +74 more
2013Science834 citations Open access
Semantic Scholar
Data access for the 1,000 Plants (1KP) project
Naim Matasci, Ling-Hong Hung, Zhi-Xiang Yan, E. Carpenter +40 more
2014GigaScience509 citations Open access
Semantic Scholar
The butterfly plant arms-race escalated by gene and genome duplications
P. Edger, Hanna M. Heidel-Fischer, M. Bekaert, J. Rota +20 more
2015Proceedings of the National Academy of Sciences of the United States of America472 citations Open access
Semantic Scholar
Fern genomes elucidate land plant evolution and cyanobacterial symbioses
Fay-Wei Li, P. Brouwer, L. Carretero-Paulet, Shi-Feng Cheng +38 more
2018Nature Plants429 citations Open access
Semantic Scholar
Genome of the long-living sacred lotus (Nelumbo nucifera Gaertn.)
R. Ming, R. VanBuren, Yan-Ling Liu, Mei Yang +67 more
2013Genome Biology380 citations Open access
Semantic Scholar
A revised classification of Santalales
D. Nickrent, V. Malécot, R. Vidal-Russell, J. Der
2010272 citations
Semantic Scholar
Horizontal transfer of an adaptive chimeric photoreceptor from bryophytes to ferns
Fay-Wei Li, J. Villarreal, S. Kelly, C. Rothfels +31 more
2014Proceedings of the National Academy of Sciences of the United States of America162 citations Open access
Semantic Scholar
Comparative Transcriptome Analyses Reveal Core Parasitism Genes and Suggest Gene Duplication and Repurposing as Sources of Structural Novelty
Zhen-Zhen Yang, E. Wafula, L. Honaas, Hui-Ting Zhang +14 more
2014Molecular biology and evolution145 citations Open access
Semantic Scholar
Genome Sequence of Striga asiatica Provides Insight into the Evolution of Plant Parasitism.
S. Yoshida, Seungill Kim, E. Wafula, J. Tanskanen +39 more
2019Current Biology141 citations Open access
Semantic Scholar
A Molecular Phylogeny of Santalaceae (Santalales)
J. Der, Daniel L. Nickrent
2008128 citations
Semantic Scholar
De novo characterization of the gametophyte transcriptome in bracken fern, Pteridium aquilinum
J. Der, M. Barker, N. Wickett, C. dePamphilis +1 more
2011BMC Genomics126 citations Open access
Semantic Scholar
Phylogenetic relationships of Santalales with insights into the origins of holoparasitic Balanophoraceae
Huei-Jiun Su, Jer-Ming Hu, F. Anderson, J. Der +1 more
2015113 citations
Semantic Scholar
Selecting Superior De Novo Transcriptome Assemblies: Lessons Learned by Leveraging the Best Plant Genome
L. Honaas, E. Wafula, N. Wickett, J. Der +6 more
2016PLoS ONE103 citations Open access
Semantic Scholar
Single-Copy Nuclear Genes Place Haustorial Hydnoraceae within Piperales and Reveal a Cretaceous Origin of Multiple Parasitic Angiosperm Lineages
J. Naumann, K. Salomo, J. Der, E. Wafula +7 more
2013PLoS ONE103 citations Open access
Semantic Scholar
The evolution of chloroplast genes and genomes in ferns
P. Wolf, J. Der, A. Duffy, J. B. Davidson +2 more
2011Plant Molecular Biology102 citations
Semantic Scholar
Global chloroplast phylogeny and biogeography of bracken (Pteridium; Dennstaedtiaceae).
J. Der, J. Thomson, Jeran K. Stratford, P. Wolf
2009American-Eurasian journal of botany100 citations
Semantic Scholar
Assembly and Validation of the Genome of the Nonmodel Basal Angiosperm Amborella
S. Chamala, A. Chanderbali, J. Der, T. Lan +12 more
2013Science93 citations
Semantic Scholar
Discovery of the photosynthetic relatives of the "Maltese mushroom" Cynomorium
D. Nickrent, J. Der, F. Anderson
2005BMC Evolutionary Biology89 citations Open access
Semantic Scholar
An Exploration into Fern Genome Space
P. Wolf, Emily B. Sessa, D. Marchant, Fay-Wei Li +9 more
2015Genome Biology and Evolution87 citations Open access
Semantic Scholar
Detecting and Characterizing the Highly Divergent Plastid Genome of the Nonphotosynthetic Parasitic Plant Hydnora visseri (Hydnoraceae)
J. Naumann, J. Der, E. Wafula, Samuel S. Jones +8 more
2016Genome Biology and Evolution85 citations Open access
Semantic Scholar
Origin and diversification of wings: Insights from a neopteran insect
V. Medved, J. Marden, H. Fescemyer, J. Der +3 more
2015Proceedings of the National Academy of Sciences of the United States of America76 citations Open access
Semantic Scholar
Functional genomics of a generalist parasitic plant: Laser microdissection of host-parasite interface reveals host-specific patterns of parasite gene expression
L. Honaas, E. Wafula, Zhen-Zhen Yang, J. Der +7 more
2013BMC Plant Biology76 citations Open access
Semantic Scholar
Between Two Fern Genomes
Emily B. Sessa, J. Banks, M. Barker, J. Der +15 more
2014GigaScience68 citations Open access
Semantic Scholar
Transcriptome Analysis Reveals the Same 17 S-Locus F-Box Genes in Two Haplotypes of the Self-Incompatibility Locus of Petunia inflata[W]
Justin S. Williams, J. Der, C. dePamphilis, T. Kao
2014The Plant Cell63 citations Open access
Semantic Scholar
Ecological genomics of tropical trees: how local population size and allelic diversity of resistance genes relate to immune responses, cosusceptibility to pathogens, and negative density dependence
J. Marden, S. Mangan, M. Peterson, E. Wafula +4 more
2017Molecular Ecology61 citations Open access
Semantic Scholar
Phylogenetic analysis of pectin-related gene families in Physcomitrella patens and nine other plant species yields evolutionary insights into cell walls
Thomas W. McCarthy, J. Der, L. Honaas, C. dePamphilis +1 more
2014BMC Plant Biology54 citations Open access
Semantic Scholar
Evolutionary Genomics of Ferns and Lycophytes
Emily B. Sessa, J. Der
201642 citations
Semantic Scholar
Transcriptome analysis reveals nutrition‐ and age‐related patterns of gene expression in the fat body of pre‐overwintering bumble bee queens
C. P. Costa, Michelle A. Duennes, K. Fisher, J. Der +4 more
2020Molecular Ecology31 citations
Semantic Scholar
Worldwide relationships in the fern genus Pteridium (bracken) based on nuclear genome markers
P. Wolf, Carol A. Rowe, Sylvia P. Kinosian, J. Der +4 more
2019American-Eurasian journal of botany27 citations Open access
Semantic Scholar
Diversity of soil mycobacterium isolates from three sites that degrade polycyclic aromatic hydrocarbons
Charles D. Miller, R. Child, J. Hughes, M. Benscai +3 more
2007Journal of Applied Microbiology24 citations Open access
Semantic Scholar
Overlapping Patterns of Gene Expression Between Gametophyte and Sporophyte Phases in the Fern Polypodium amorphum (Polypodiales)
E. Sigel, E. Schuettpelz, K. Pryer, J. Der
2018Frontiers in Plant Science23 citations Open access
Semantic Scholar
Scientific Inquiry in the Genetics Laboratory: Biologists and University Science Teacher Educators Collaborating to Increase Engagement in Science Processes.
T. Campbell, J. Der, P. Wolf, Eric D. Packenham +1 more
201218 citations
Semantic Scholar
Expression Level Dominance and Homeolog Expression Bias in Recurrent Origins of the Allopolyploid Fern Polypodium hesperium
E. Sigel, J. Der, M. Windham, K. Pryer
2019American Fern Journal15 citations
Semantic Scholar
Genomic perspectives on evolution in bracken fern
J. Der
201015 citations
Semantic Scholar
Origins and diversity of a cosmopolitan fern genus on an island archipelago
P. Wolf, Carol A. Rowe, J. Der, M. Schilling +2 more
2015AoB Plants14 citations Open access
Semantic Scholar
THE CALIFORNIA PHENOLOGY COLLECTIONS NETWORK: USING DIGITAL IMAGES TO INVESTIGATE PHENOLOGICAL CHANGE IN A BIODIVERSITY HOTSPOT
J. Yost, Katelin D. Pearson, Jason A. Alexander, Edward E. Gilbert +36 more
2020Madroño10 citations Open access
Semantic Scholar
The Taxonomic Designation of Eriogonum corymbosum var. nilesii (Polygonaceae) is Supported by AFLP and cpDNA Analyses
M. Ellis, J. M. Roper, R. Gainer, J. Der +1 more
20098 citations
Semantic Scholar
Characterization of a cloned temperature-sensitive construct of the diphtheria toxin A domain.
Jason W. L. Lee, Eun-Jyung Cho, Elda Aghaian, Elsa Aghaian +2 more
2005Biochemistry3 citations
Semantic Scholar
An Exploration of Fern Genome Space
P. Wolf, J. Der, Fay-Wei Li, C. Rothfels +6 more
20142 citations
Semantic Scholar
Transcriptome Analysis Reveals the Same 17 S-Locus F-Box Genes in Two Haplotypes of the Self-Incompatibility Locus of Petunia in fl ata
Justin S. Williams, J. Der, C. dePamphilis, Teh-hui Kaoa
20142 citations
Semantic Scholar
A Global Phylogeographic Study of the Chloroplast Genome in Bracken (Pteridium: Dennstaedtiaceae)
J. Der, J. Thomson, P. Wolf
20062 citations
Semantic Scholar
Exploratory Analyses of Genomic Sequences in the Bracken Fern, Pteridium Aquilinum
J. Der, P. Wolf
20091 citations
Semantic Scholar
Peer Review #1 of "A draft genome and transcriptome of common milkweed (Asclepias syriaca) as resources for evolutionary, ecological, and molecular studies in milkweeds and Apocynaceae (v0.1)"
K. Weitemier, S. Straub, M. Fishbein, Donovan Bailey +496 more
20190 citations Open access
Semantic Scholar
Pteridium nuclear gene phylogeny
P. Wolf, Carol A. Rowe, Sylvia P. Kinosian, J. Der +4 more
20190 citations
Semantic Scholar
A comparison of pollination ecology in native Calystegia macrostegia and non-native Convolvulus arvensis
B. Cook, D. Jaques, Amber Jolly, Shan-Shan Chou +4 more
20170 citations
Semantic Scholar
Microsoft Word-Naumann_Revision2_Main_Figs.docx
J. Naumann, J. Der, E. Wafula, Samuel S. Jones +9 more
20150 citations
Semantic Scholar
Comparative Exploration of Fern Genome Space
J. Der
20150 citations
Semantic Scholar
An Exploration of Fern Genome Space Datasets 7-28-2014 An Exploration of Fern Genome Space
P. Wolf, Emily B. Sessa, D. Marchant, Fay-Wei Li +9 more
20150 citations
Semantic Scholar

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