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Pieter Verschaffelt · SciRah

Researcher profile · Semantic Scholar

Pieter Verschaffelt

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Pieter Verschaffelt — researcher profile on SciRah

h-index: 11
Works: 27
Citations: 483

Most-cited papers

Unipept 4.0: Functional Analysis of Metaproteome Data.
Robbert Gurdeep Singh, A. Tanca, Antonio Palomba, F. Van der Jeugt +5 more
2018Journal of Proteome Research146 citations Open access
Semantic Scholar
Critical Assessment of MetaProteome Investigation (CAMPI): a multi-laboratory comparison of established workflows
T. Van Den Bossche, B. Kunath, K. Schallert, Stephanie S. Schäpe +41 more
2021Nature Communications90 citations Open access
Semantic Scholar
The microbiologist's guide to metaproteomics
T. Van Den Bossche, J. Armengaud, D. Benndorf, J. Blakeley-Ruiz +27 more
2025iMeta63 citations Open access
Semantic Scholar
Unipept Desktop: A Faster, More Powerful Metaproteomics Results Analysis Tool.
Pieter Verschaffelt, T. Van Den Bossche, L. Martens, P. Dawyndt +1 more
2021Journal of Proteome Research31 citations Open access
Semantic Scholar
Pout2Prot: an efficient tool to create protein (sub)groups from Percolator output files
T. Van Den Bossche, K. Schallert, Pieter Verschaffelt, Bart Mesuere +2 more
2021bioRxiv20 citations Open access
Semantic Scholar
Unipept in 2024: Expanding Metaproteomics Analysis with Support for Missed Cleavages and Semitryptic and Nontryptic Peptides.
Tibo Vande Moortele, Bram Devlaminck, Simon Van de Vyver, T. Van Den Bossche +4 more
2025Journal of Proteome Research19 citations Open access
Semantic Scholar
Unipept Desktop 2.0: construction of targeted reference protein databases for proteogenomics analyses
Pieter Verschaffelt, A. Tanca, Marcello Abbondio, T. Van Den Bossche +4 more
2023bioRxiv19 citations Open access
Semantic Scholar
MegaGO: A Fast Yet Powerful Approach to Assess Functional Gene Ontology Similarity across Meta-Omics Data Sets.
Pieter Verschaffelt, T. Van Den Bossche, Wassim Gabriel, Michał Burdukiewicz +5 more
2021Journal of Proteome Research14 citations Open access
Semantic Scholar
Unipept CLI 2.0: adding support for visualizations and functional annotations
Pieter Verschaffelt, Philippe Van Thienen, T. Van Den Bossche, F. Van der Jeugt +4 more
2020Bioinform.14 citations
Semantic Scholar
Critical Assessment of Metaproteome Investigation (CAMPI): A Multi-Lab Comparison of Established Workflows
T. Van Den Bossche, B. Kunath, K. Schallert, Stephanie S. Schäpe +41 more
2021bioRxiv12 citations Open access
Semantic Scholar
Connecting MetaProteomeAnalyzer and PeptideShaker to Unipept for seamless end-to-end metaproteomics data analysis.
T. Van Den Bossche, Pieter Verschaffelt, K. Schallert, Harald Barsnes +6 more
2020Journal of Proteome Research12 citations Open access
Semantic Scholar
UMGAP: the Unipept MetaGenomics Analysis Pipeline
F. Van der Jeugt, Rien Maertens, Aranka Steyaert, Pieter Verschaffelt +3 more
2021BMC Genomics8 citations Open access
Semantic Scholar
Biodiversity Analysis of Metaproteomics Samples with Unipept: A Comprehensive Tutorial.
T. Van Den Bossche, Pieter Verschaffelt, Tibo Vande Moortele, P. Dawyndt +2 more
2023Methods in molecular biology7 citations Open access
Semantic Scholar
Unipept in 2024: Expanding Metaproteomics Analysis with Support for Missed Cleavages, Semi-Tryptic and Non-Tryptic Peptides
Tibo Vande Moortele, Bram Devlaminck, Simon Van de Vyver, T. Van Den Bossche +4 more
2024bioRxiv6 citations
Semantic Scholar
Unipept Visualizations: an interactive visualization library for biological data
Pieter Verschaffelt, James H. Collier, Alexander Botzki, L. Martens +2 more
2021Bioinform.5 citations Open access
Semantic Scholar
Proceedings of the EuBIC-MS 2020 Developers’ Meeting
Christopher Ashwood, Wout Bittremieux, E. Deutsch, N. Doncheva +29 more
2020EuPA Open Proteomics5 citations Open access
Semantic Scholar
MegaGO: a fast yet powerful approach to assess functional similarity across meta-omics data sets
Pieter Verschaffelt, T. Van Den Bossche, Wassim Gabriel, Michał Burdukiewicz +5 more
2020bioRxiv5 citations Open access
Semantic Scholar
The need for standardization and improved open (meta)data practices in metaproteomics
T. Van Den Bossche, M. Wolf, J. Armengaud, M. Arntzen +25 more
2026Microbiome3 citations Open access
Semantic Scholar
The Peptonizer2000: Bringing Confidence to Metaproteomics
Tanja Holstein, Pieter Verschaffelt, T. Van Den Bossche, Simon Van de Vyver +3 more
2025bioRxiv3 citations Open access
Semantic Scholar
The Metaproteomics Initiative: five years of community-driven progress
T. Van Den Bossche, L. Grenga, Gelio Alves, M. Arntzen +20 more
2026Microbiome2 citations Open access
Semantic Scholar
PathwayPilot: A User-Friendly Tool for Visualizing and Navigating Metabolic Pathways
Tibo Vande Moortele, Pieter Verschaffelt, Qingyao Huang, N. Doncheva +6 more
2024bioRxiv2 citations Open access
Semantic Scholar
Integrating multi-omics technologies to decipher microbiome functions
T. Van Den Bossche, Eunice Lazau, Velma T. E. Aho, J. Blakeley-Ruiz +41 more
2026Nature Communications0 citations Open access
Semantic Scholar
Machine learning-based rescoring with MS²Rescore boosts peptide identification and taxonomic specificity in metaproteomics
Xuxa Malliet, Arthur Declercq, R. Gabriels, Tanja Holstein +5 more
2026bioRxiv0 citations Open access
Semantic Scholar
NORI: Fast probabilistic inference for ambiguous observation-entity mappings
Simon Van de Vyver, Tibo Vande Moortele, Ben-Björn Binke, Pieter Verschaffelt +13 more
20260 citations
Semantic Scholar
Effects of UniProtKB restructuring and taxonomic database restrictions on downstream Unipept peptide-centric profiling
Tibo Vande Moortele, Simon Van de Vyver, Ben-Björn Binke, T. Van Den Bossche +4 more
2026bioRxiv0 citations Open access
Semantic Scholar
Direct construction of sparse suffix arrays with Libsais
Simon Van de Vyver, Tibo Vande Moortele, P. Dawyndt, Bart Mesuere +1 more
2025bioRxiv0 citations Open access
Semantic Scholar
The Peptonizer2000: graphical model based taxonomic identifications of metaproteomic samples
Tanja Holstein, Pieter Verschaffelt, T. Van Den Bossche, Lennart Martens +1 more
0 citations
Semantic Scholar

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Bart Mesuere×25
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Bart Mesuere — researcher profile on SciRah
T. Van Den Bossche×21
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T. Van Den Bossche — researcher profile on SciRah
P. Dawyndt×13
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L. Martens×11
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Lennart Martens

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Simon Van de Vyver×6

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