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M. Roach · SciRah

Researcher profile · Semantic Scholar

M. Roach

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M. Roach — researcher profile on SciRah

h-index: 17
Works: 39
Citations: 1,845

Most-cited papers

Purge Haplotigs: allelic contig reassignment for third-gen diploid genome assemblies
M. Roach, S. Schmidt, A. Borneman
2018BMC Bioinformatics1,039 citations Open access
Semantic Scholar
Dnaapler: A tool to reorient circular microbial genomes
G. Bouras, Susanna R. Grigson, B. Papudeshi, V. Mallawaarachchi +1 more
2024Journal of Open Source Software140 citations Open access
Semantic Scholar
Population sequencing reveals clonal diversity and ancestral inbreeding in the grapevine cultivar Chardonnay
M. Roach, Daniel L. Johnson, J. Bohlmann, H. V. van Vuuren +4 more
2018bioRxiv99 citations Open access
Semantic Scholar
Hybracter: enabling scalable, automated, complete and accurate bacterial genome assemblies
G. Bouras, Ghais Houtak, R. Wick, Vijini Mallawaarachchi +6 more
2024Microbial Genomics78 citations Open access
Semantic Scholar
The human gut virome: composition, colonization, interactions, and impacts on human health
Evan Pargin, M. Roach, Amber D. Skye, B. Papudeshi +6 more
2023Frontiers in Microbiology74 citations Open access
Semantic Scholar
Phables: from fragmented assemblies to high-quality bacteriophage genomes
V. Mallawaarachchi, M. Roach, P. Decewicz, B. Papudeshi +8 more
2023bioRxiv46 citations Open access
Semantic Scholar
Hybracter: Enabling Scalable, Automated, Complete and Accurate Bacterial Genome Assemblies
G. Bouras, Ghais Houtak, R. Wick, V. Mallawaarachchi +6 more
2023bioRxiv39 citations Open access
Semantic Scholar
Purge Haplotigs: Synteny Reduction for Third-gen Diploid Genome Assemblies
M. Roach, S. Schmidt, A. Borneman
2018bioRxiv36 citations Open access
Semantic Scholar
Inactivating Mutations in Irc7p Are Common in Wine Yeasts, Attenuating Carbon-Sulfur β-Lyase Activity and Volatile Sulfur Compound Production
Antonio G. Cordente, A. Borneman, C. Bartel, D. Capone +3 more
2019Applied and Environmental Microbiology29 citations Open access
Semantic Scholar
Comparative genome analysis proposes three new Aureobasidium species isolated from grape juice.
Cristobal A. Onetto, S. Schmidt, M. Roach, A. Borneman
2020FEMS Yeast Research23 citations Open access
Semantic Scholar
New genome assemblies reveal patterns of domestication and adaptation across Brettanomyces (Dekkera) species
M. Roach, A. Borneman
2019BMC Genomics23 citations Open access
Semantic Scholar
The Promise and Pitfalls of Prophages
J. McKerral, B. Papudeshi, L. Inglis, M. Roach +5 more
2023bioRxiv22 citations Open access
Semantic Scholar
Ten simple rules and a template for creating workflows-as-applications
M. Roach, N. T. Pierce-Ward, R. Suchecki, V. Mallawaarachchi +5 more
2022PLoS Comput. Biol.22 citations Open access
Semantic Scholar
Philympics 2021: Prophage Predictions Perplex Programs
M. Roach, K. McNair, Sarah K. Giles, L. Inglis +4 more
2021bioRxiv22 citations Open access
Semantic Scholar
Hecatomb: an integrated software platform for viral metagenomics
M. Roach, Sarah J. Beecroft, Kathie A. Mihindukulasuriya, Le-Ran Wang +7 more
2024GigaScience20 citations Open access
Semantic Scholar
Brettanomyces bruxellensis SSU1 Haplotypes Confer Different Levels of Sulfite Tolerance When Expressed in a Saccharomyces cerevisiae SSU1 Null Mutant
C. Varela, C. Bartel, M. Roach, Anthony R. Borneman +1 more
2018Applied and Environmental Microbiology19 citations Open access
Semantic Scholar
Sphae: an automated toolkit for predicting phage therapy candidates from sequencing data
B. Papudeshi, M. Roach, Vijini Mallawaarachchi, G. Bouras +14 more
2025Bioinformatics Advances17 citations Open access
Semantic Scholar
Host interactions of novel Crassvirales species belonging to multiple families infecting bacterial host, Bacteroides cellulosilyticus WH2
B. Papudeshi, A. Vega, Cole Souza, S. Giles +21 more
2023bioRxiv16 citations Open access
Semantic Scholar
Hecatomb: An End-to-End Research Platform for Viral Metagenomics
M. Roach, S. Beecroft, Kathie A. Mihindukulasuriya, Le-Ran Wang +6 more
202214 citations
Semantic Scholar
Adaptive evolution of sulfite tolerance in Brettanomyces bruxellensis.
C. Bartel, M. Roach, Cristobal A. Onetto, C. Curtin +2 more
2021FEMS Yeast Research12 citations Open access
Semantic Scholar
Bioenergetic mapping of ‘healthy microbiomes’ via compound processing potential imprinted in gut and soil metagenomes
C. Liddicoat, Rob Edwards, M. Roach, Jake M. Robinson +12 more
2024bioRxiv8 citations Open access
Semantic Scholar
Phage Diving: An Exploration of the Carcharhinid Shark Epidermal Virome
R. D. Hesse, M. Roach, E. Kerr, B. Papudeshi +7 more
2022Viruses8 citations Open access
Semantic Scholar
Koverage: Read-coverage analysis for massive (meta)genomics datasets
M. Roach, B. Hart, Sarah J. Beecroft, B. Papudeshi +5 more
2024Journal of Open Source Software7 citations Open access
Semantic Scholar
The StkSR Two-Component System Influences Colistin Resistance in Acinetobacter baumannii
Sarah K. Giles, U. H. Stroeher, B. Papudeshi, R. Edwards +3 more
2022Microorganisms7 citations Open access
Semantic Scholar
No Evidence Known Viruses Play a Role in the Pathogenesis of Onchocerciasis-Associated Epilepsy. An Explorative Metagenomic Case-Control Study
M. Roach, A. Cantu, M. Vieri, M. Cotten +11 more
2021Pathogens7 citations Open access
Semantic Scholar
Prophages: an integral but understudied component of the human microbiome
L. Inglis, M. Roach, R. Edwards
2024Microbial Genomics5 citations Open access
Semantic Scholar
Prophage rates in the human microbiome vary by body site and host health
L. Inglis, M. Roach, R. Edwards
2023bioRxiv5 citations Open access
Semantic Scholar
Origin of Chardonnay clones with historical significance in Australia and California
M. Roach, Anthony R. Borneman, S. Schmidt
20205 citations Open access
Semantic Scholar
Single-cell gene expression links SARS-CoV-2 infection and gut serotonin
Alyce M. Martin, M. Roach, L. A. Jones, D. Thorpe +4 more
2022Gut4 citations Open access
Semantic Scholar
Hecatomb: An End-to-End Research Platform for Viral Metagenomics
M. Roach, Sarah J. Beecroft, Kathie A. Mihindukulasuriya, Le-Ran Wang +4 more
2022bioRxiv2 citations Open access
Semantic Scholar
Microbial Ecological Signatures Predict Pathogen Emergence and Multidrug Resistance in Cystic Fibrosis Airways up to a Year in Advance
T. Goddard, J. A. Carlson-Jones, J. Morton, C. Y. Ooi +38 more
2026medRxiv1 citations
Semantic Scholar
The mood stabilizer lithium alters behaviour and physiology via the gut brain axis
Daniel W Thorpe, Y. Ootsuka, R. A. Peterson, L. A. Jones +25 more
2026bioRxiv1 citations Open access
Semantic Scholar
phage therapy candidates from Sphae: An automated toolkit for predicting sequencing data
B. Papudeshi, M. Roach, Vijini Mallawaarachchi, G. Bouras +14 more
2024bioRxiv1 citations Open access
Semantic Scholar
OpusTaxa: A Unified Workflow for Taxonomic Profiling, Assembly, and Functional Analysis of Shotgun Metagenomes
Yen-Kai Chen, C. Harker, Cong M. Pham, L. Grundy +3 more
2026bioRxiv0 citations Open access
Semantic Scholar
CircACVR2A(2–4) regulates stem cell pluripotency by uncoupling CDK-activating kinase functions
Stuart Webb, Vanessa M. Conn, E. V. van Battum, K. Kirk +21 more
2026Nucleic Acids Research0 citations Open access
Semantic Scholar
Co-migration of hundreds of microbial species over metres drives selection and promotes non-motile hitchhikers
Susanna R. Grigson, A. Hutton, Jessica A. P. Carlson-Jones, J. Paterson +8 more
2026Nature Communications0 citations Open access
Semantic Scholar
Prophages as a source of antimicrobial resistance genes in the human microbiome
L. Inglis, Susanna R. Grigson, M. Roach, Rob Edwards
2025bioRxiv0 citations Open access
Semantic Scholar
Novel crAssphage isolates exhibit conserved gene order and purifying 1 selection of the host specificity protein 2 New crAssphage isolates infecting Bacteroides cellulosilyticus
B. Papudeshi, A. Vega, Cole Souza, S. Giles +21 more
20230 citations
Semantic Scholar
LIPSITZ GREEN SCIME CAMBRIA LLP, BUFFALO (JOHN A. COLLINS OF COUNSEL), FOR PLAINTIFF-APPELLANT.
K. Michelle Doyle, Christopher J. Werth, Buffalo Anesthesia Associates, Joel J. Java +2 more
20120 citations
Semantic Scholar

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