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Xiaojing Wang · SciRah

Researcher profile · Semantic Scholar

Xiaojing Wang

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Xiaojing Wang — researcher profile on SciRah

h-index: 26
Works: 49
Citations: 4,321

Most-cited papers

Proteogenomic characterization of human colon and rectal cancer
Bing Zhang, Jing Wang, Xiaojing Wang, Jing Zhu +19 more
2014Nature1,357 citations Open access
Semantic Scholar
Proteogenomic analysis of human colon cancer reveals new therapeutic opportunities
S. Vasaikar, Chen Huang, Xiaojing Wang, V. Petyuk +78 more
2019Cell697 citations Open access
Semantic Scholar
Genome sequencing and comparative analysis of Saccharomyces cerevisiae strain YJM789
Wu Wei, John H. McCusker, R. Hyman, Ted Jones +18 more
2007Proceedings of the National Academy of Sciences of the United States of America275 citations Open access
Semantic Scholar
SEPPA: a computational server for spatial epitope prediction of protein antigens
Jing Sun, Di Wu, Tianlei Xu, Xiaojing Wang +4 more
2009Nucleic Acids Res.172 citations Open access
Semantic Scholar
Protein identification using customized protein sequence databases derived from RNA-Seq data
Xiaojing Wang, R. Slebos, Dong Wang, P. Halvey +3 more
2011Journal of Proteome Research168 citations Open access
Semantic Scholar
customProDB: an R package to generate customized protein databases from RNA-Seq data for proteomics search
Xiaojing Wang, Bing Zhang
2013Bioinform.167 citations Open access
Semantic Scholar
Methods, Tools and Current Perspectives in Proteogenomics *
K. Ruggles, Karsten Krug, Xiaojing Wang, K. Clauser +5 more
2017Molecular & Cellular Proteomics132 citations Open access
Semantic Scholar
NFAT transcriptional activity is associated with metastatic capacity in colon cancer
M. Tripathi, N. Deane, Jing Zhu, H. An +10 more
2014Cancer Research115 citations Open access
Semantic Scholar
Oncogenic KRAS and BRAF Drive Metabolic Reprogramming in Colorectal Cancer *
Josiah E. Hutton, Xiaojing Wang, L. J. Zimmerman, R. Slebos +4 more
2016Molecular & Cellular Proteomics109 citations Open access
Semantic Scholar
PepQuery enables fast, accurate, and convenient proteomic validation of novel genomic alterations
Bo Wen, Xiaojing Wang, Bing Zhang
2019Genome Research92 citations Open access
Semantic Scholar
Corrigendum: Proteomic analysis of colon and rectal carcinoma using standard and customized databases
R. Slebos, Xia Wang, Xiaojing Wang, Bing Zhang +2 more
2015Scientific Data89 citations Open access
Semantic Scholar
Detection of Proteome Diversity Resulted from Alternative Splicing is Limited by Trypsin Cleavage Specificity
Xiaojing Wang, Simona G. Codreanu, Bo Wen, Kai Li +3 more
2017Molecular & Cellular Proteomics87 citations Open access
Semantic Scholar
Leveraging the complementary nature of RNA-Seq and shotgun proteomics data
Xiaojing Wang, Qi Liu, Bing Zhang
2014Proteomics80 citations Open access
Semantic Scholar
Colorectal cancer cell line proteomes are representative of primary tumors and predict drug sensitivity
Jing Wang, D. Mouradov, Xiaojing Wang, R. Jorissen +20 more
2017Gastroenterology66 citations Open access
Semantic Scholar
Integrated analysis of telomerase enzymatic activity unravels an association with cancer stemness and proliferation
Nighat Noureen, Shaofang Wu, Yingli Lv, Jue-Chen Yang +6 more
2021Nature Communications64 citations Open access
Semantic Scholar
PGA: an R/Bioconductor package for identification of novel peptides using a customized database derived from RNA-Seq
Bo Wen, Shaohang Xu, Ruo Zhou, Bing Zhang +4 more
2016BMC Bioinformatics59 citations Open access
Semantic Scholar
Activation of the Endogenous Renin-Angiotensin-Aldosterone System or Aldosterone Administration Increases Urinary Exosomal Sodium Channel Excretion.
Ying Qi, Xiaojing Wang, Kristie L. Rose, W. H. MacDonald +3 more
2016Journal of the American Society of Nephrology57 citations Open access
Semantic Scholar
Revealing Missing Human Protein Isoforms Based on Ab Initio Prediction, RNA-seq and Proteomics
Zhi-Qiang Hu, H. Scott, Guangrong Qin, Guang-Yong Zheng +11 more
2015Scientific Reports57 citations Open access
Semantic Scholar
Signature-scoring methods developed for bulk samples are not adequate for cancer single-cell RNA sequencing data
Nighat Noureen, Zhen-Qing Ye, Yi-Dong Chen, Xiaojing Wang +1 more
2022eLife53 citations Open access
Semantic Scholar
Proteogenomic analysis reveals unanticipated adaptations of colorectal tumor cells to deficiencies in DNA mismatch repair
P. Halvey, Xiaojing Wang, Jing Wang, A. Bhat +5 more
2013Cancer Research48 citations Open access
Semantic Scholar
A PoleP286R mouse model of endometrial cancer recapitulates high mutational burden and immunotherapy response.
Hao-Dong Li, Chang-Zheng Lu, He Zhang, Qing Hu +14 more
2020JCI Insight41 citations Open access
Semantic Scholar
CanProVar 2.0: an Updated Database of Human Cancer Proteome Variation
Meng-Huan Zhang, Bo Wang, Jia Xu, Xiaojing Wang +4 more
2016Journal of Proteome Research38 citations Open access
Semantic Scholar
Conserved genes in a path from commensalism to pathogenicity: comparative phylogenetic profiles of Staphylococcus epidermidis RP62A and ATCC12228
Wu Wei, Zhi-Wei Cao, Yu-Li Zhu, Xiaojing Wang +6 more
2006BMC Genomics35 citations Open access
Semantic Scholar
Integrating Genomic, Transcriptomic, and Interactome Data to Improve Peptide and Protein Identification in Shotgun Proteomics
Xiaojing Wang, Bing Zhang
2014Journal of Proteome Research34 citations Open access
Semantic Scholar
Ab-origin: an enhanced tool to identify the sourcing gene segments in germline for rearranged antibodies
Xiaojing Wang, Di Wu, Si-Yuan Zheng, Jing Sun +3 more
2008BMC Bioinformatics33 citations Open access
Semantic Scholar
Protein Modification by Endogenously Generated Lipid Electrophiles: Mitochondria as the Source and Target
William N. Beavers, Kristie L. Rose, J. Galligan, M. M. Mitchener +10 more
2017ACS Chemical Biology32 citations Open access
Semantic Scholar
proBAMsuite, a Bioinformatics Framework for Genome-Based Representation and Analysis of Proteomics Data
Xiaojing Wang, R. Slebos, Matthew C. Chambers, D. Tabb +2 more
2015Molecular & Cellular Proteomics26 citations Open access
Semantic Scholar
Prospective Clinical Sequencing of Adult Glioma
Si-Yuan Zheng, Kristin D. Alfaro-Munoz, Wei Wei, Xiaojing Wang +11 more
2019Molecular Cancer Therapeutics21 citations Open access
Semantic Scholar
The proBAM and proBed standard formats: enabling a seamless integration of genomics and proteomics data
Gerben Menschaert, Xiaojing Wang, Andrew R. Jones, F. Ghali +6 more
2017Genome Biology20 citations Open access
Semantic Scholar
A synonymous VHL variant in exon 2 confers susceptibility to familial pheochromocytoma and von Hippel-Lindau disease.
Shahida K. Flores, Ziming Cheng, Angela M. Jasper, K. Natori +17 more
2019Journal of Clinical Endocrinology and Metabolism19 citations Open access
Semantic Scholar
Identification of HPV integration and gene mutation in HeLa cell line by integrated analysis of RNA-Seq and MS/MS data.
Han Sun, Cheng Chen, Baofeng Lian, Meng-Huan Zhang +5 more
2015Journal of Proteome Research18 citations
Semantic Scholar
Evaluation of spatial epitope computational tools based on experimentally-confirmed dataset for protein antigens
Xiaolian Xu, Jing Sun, Qi Liu, Xiaojing Wang +4 more
201016 citations
Semantic Scholar
PCAT: an integrated portal for genomic and preclinical testing data of pediatric cancer patient-derived xenograft models
Jue-Chen Yang, Qilin Li, Nighat Noureen, Yanbing Fang +4 more
2020bioRxiv15 citations Open access
Semantic Scholar
Comparative analysis of A-to-I editing in human and non-human primate brains reveals conserved patterns and context-dependent regulation of RNA editing
Richard T. O’Neil, Xiaojing Wang, Michael V. Morabito, R. Emeson
2017Molecular Brain11 citations Open access
Semantic Scholar
Integrating mRNA and Protein Sequencing Enables the Detection and Quantitative Profiling of Natural Protein Sequence Variants of Populus trichocarpa.
P. Abraham, Xiaojing Wang, P. Ranjan, I. Nookaew +3 more
2015Journal of Proteome Research8 citations Open access
Semantic Scholar
Comparative analysis of two-component signal transduction system in two streptomycete genomes.
Wu Wei, Weihua Wang, Zhi-Wei Cao, Hong Yu +6 more
2007Acta Biochimica et Biophysica Sinica8 citations
Semantic Scholar
MPSQ: a web tool for protein-state searching
Si-Yuan Zheng, J. Sheng, Chuan Wang, Xiaojing Wang +8 more
2008Bioinform.5 citations Open access
Semantic Scholar
Inferring Telomerase Enzymatic Activity from Expression Data
Nighat Noureen, Shaofang Wu, Yingli Lyu, Jue-Chen Yang +6 more
2020bioRxiv1 citations Open access
Semantic Scholar
Correction to Protein Identification Using Customized Protein Sequence Databases Derived from RNA-Seq Data
Xiaojing Wang, R. Slebos, Dong Wang, P. Halvey +3 more
20121 citations
Semantic Scholar
Ab-origin: An Improved Tool of Heavy Chain Rearrangement Analysis for Human Immunoglobulin
Xiaojing Wang, Wu Wei, Si-Yuan Zheng, Zhi-Wei Cao +1 more
2007International Conference on Conceptual Structures1 citations Open access
Semantic Scholar
Benchmarking supervised signature-scoring methods for single-cell RNA sequencing data in cancer
Nighat Noureen, Zhen-Qing Ye, Yi-Dong Chen, Xiaojing Wang +1 more
2021bioRxiv0 citations Open access
Semantic Scholar
The Analysis of Tumor Microenvironment of Prostate Cancer Identifies Prognostic Signatures
Guo-Liang Lu, Xiaojing Wang, Bao-Xing Huang, Yang Zhao +2 more
20200 citations Open access
Semantic Scholar
Abstract LB-006: Proteogenomic characterization of human colon cancer reveals new therapeutic opportunities
Bing Zhang, S. Vasaikar, Chen Huang, Xiaojing Wang +28 more
2019Cancer Chemistry0 citations
Semantic Scholar
Go to UCSC Table Browser Choose genome Choose assembly Group — Genes and Gene Prediction Tracks Track — RefSeq Genes
Xiaojing Wang, Bing Zhang
20170 citations
Semantic Scholar
Introduction to pepXMLTab
Xiaojing Wang
20160 citations
Semantic Scholar
Introduction to proBAMr
Xiaojing Wang
20150 citations
Semantic Scholar
Revealing missing isoforms encoded in the human genome by integrating genomic, transcriptomic and proteomic data
Zhi-Qiang Hu, H. Scott, Guangrong Qin, Guang-Yong Zheng +11 more
2014bioRxiv0 citations Open access
Semantic Scholar
352 – Mitochondrial Proteins Are Highly Adducted Targets of Endogenously Generated Lipid Electrophiles in LPS-Activated RAW264.7 Macrophages
William N. Beavers, Kristie L. Rose, J. Galligan, K. Tallman +9 more
20140 citations
Semantic Scholar
Resource Proteogenomic Analysis of Human Colon Cancer Reveals New Therapeutic Opportunities Graphical
S. Vasaikar, Chen Huang, Xiaojing Wang, V. Petyuk +28 more
0 citations
Semantic Scholar

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