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J. Bergenstråhle · SciRah

Researcher profile · Semantic Scholar

J. Bergenstråhle

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J. Bergenstråhle — researcher profile on SciRah

h-index: 16
Works: 28
Citations: 4,282

Most-cited papers

Multimodal Analysis of Composition and Spatial Architecture in Human Squamous Cell Carcinoma
A. Ji, Adam J. Rubin, K. Thrane, Si-Zun Jiang +17 more
2020Cell1,086 citations Open access
Semantic Scholar
Spatially Resolved Transcriptomes—Next Generation Tools for Tissue Exploration
Michaela Asp, J. Bergenstråhle, J. Lundeberg
2020Bioessays574 citations Open access
Semantic Scholar
Spatial maps of prostate cancer transcriptomes reveal an unexplored landscape of heterogeneity
E. Berglund, J. Maaskola, N. Schultz, S. Friedrich +14 more
2018Nature Communications504 citations Open access
Semantic Scholar
Single-cell and spatial transcriptomics enables probabilistic inference of cell type topography
Alma Andersson, J. Bergenstråhle, Michaela Asp, L. Bergenstråhle +3 more
2020Communications Biology414 citations Open access
Semantic Scholar
Single-cell meta-analysis of SARS-CoV-2 entry genes across tissues and demographics
C. Muus, M. Luecken, G. Eraslan, L. Sikkema +110 more
2021Nature Medicine326 citations Open access
Semantic Scholar
Spatially resolved clonal copy number alterations in benign and malignant tissue
A. Erickson, Meng-Xiao He, E. Berglund, M. Marklund +27 more
2022Nature284 citations Open access
Semantic Scholar
Integrated analyses of single-cell atlases reveal age, gender, and smoking status associations with cell type-specific expression of mediators of SARS-CoV-2 viral entry and highlights inflammatory programs in putative target cells
C. Muus, M. Luecken, G. Eraslan, Avinash Waghray +100 more
2020bioRxiv255 citations Open access
Semantic Scholar
Seamless integration of image and molecular analysis for spatial transcriptomics workflows
J. Bergenstråhle, L. Larsson, J. Lundeberg
2020BMC Genomics245 citations Open access
Semantic Scholar
Super-resolved spatial transcriptomics by deep data fusion
L. Bergenstråhle, B. He, J. Bergenstråhle, X. Abalo +11 more
2020Nature Biotechnology186 citations Open access
Semantic Scholar
A latent lineage potential in resident neural stem cells enables spinal cord repair
Enric Llorens-Bobadilla, James M. Chell, Pierre Le Merre, Yi-Cheng Wu +8 more
2020Science142 citations
Semantic Scholar
The spatial landscape of gene expression isoforms in tissue sections
K. Lebrigand, J. Bergenstråhle, K. Thrane, A. Mollbrink +4 more
2020bioRxiv97 citations Open access
Semantic Scholar
A topographic atlas defines developmental origins of cell heterogeneity in the human embryonic lung
A. Sountoulidis, Sergio Marco Salas, Emelie Braun, C. Avenel +23 more
2023Nature Cell Biology46 citations Open access
Semantic Scholar
Multimodal Analysis of Composition and Spatial Architecture in Human Squamous Cell Carcinoma
A. Ji, Adam J. Rubin, K. Thrane, Si-Zun Jiang +17 more
2020Cell36 citations Open access
Semantic Scholar
A Single-Stranded Oligonucleotide Inhibits Toll-Like Receptor 3 Activation and Reduces Influenza A (H1N1) Infection
C. Poux, Aleksandra Dondalska, J. Bergenstråhle, S. Pålsson +9 more
2019Frontiers in Immunology24 citations Open access
Semantic Scholar
Spatial mapping of cell types by integration of transcriptomics data
Alma Andersson, J. Bergenstråhle, Michaela Asp, L. Bergenstråhle +3 more
2019bioRxiv18 citations Open access
Semantic Scholar
Single-Stranded Nucleic Acids Regulate TLR3/4/7 Activation through Interference with Clathrin-Mediated Endocytosis
P. Järver, Aleksandra Dondalska, C. Poux, AnnSofi Sandberg +15 more
2018Scientific Reports16 citations Open access
Semantic Scholar
SpatialCPie: an R/Bioconductor package for spatial transcriptomics cluster evaluation
J. Bergenstråhle, L. Bergenstråhle, J. Lundeberg
2020BMC Bioinformatics14 citations Open access
Semantic Scholar
Single-Stranded Oligonucleotide-Mediated Inhibition of Respiratory Syncytial Virus Infection
S. Pålsson, Aleksandra Dondalska, J. Bergenstråhle, C. Rolfes +11 more
2020Frontiers in Immunology13 citations Open access
Semantic Scholar
Abstract PR016: The spatial landscape of clonal somatic mutations in benign and malignant tissue
A. Erickson, E. Berglund, Meng-Xiao He, M. Marklund +25 more
2022Cancer Research10 citations
Semantic Scholar
Developmental origins of cell heterogeneity in the human lung
A. Sountoulidis, Sergio Marco Salas, Emelie Braun, C. Avenel +22 more
2022bioRxiv3 citations Open access
Semantic Scholar
Projection - specific connectivity mapping of serotonergic neurons in the dorsal raphe
J. Bergenstråhle
20141 citations
Semantic Scholar
Abstract A051: The spatial landscape of clonal somatic copy number alterations in benign and malignant prostate epithelia
A. Erickson, Meng-Xiao He, E. Berglund, M. Marklund +27 more
2023Cancer Research0 citations
Semantic Scholar
MP45-14 THE SPATIAL LANDSCAPE OF CLONAL SOMATIC MUTATIONS IN BENIGN AND MALIGNANT PROSTATE EPITHELIA
A. Erickson, E. Berglund, Meng-Xiao He, M. Marklund +25 more
2022Journal of Urology0 citations
Semantic Scholar
Abstract 2171: The spatial landscape of clonal somatic mutations in benign and malignant tissue
Andrew Erickson, E. Berglund, Meng-Xiao He, M. Marklund +25 more
2022Cancer Research0 citations
Semantic Scholar
The spatial landscape of clonal somatic mutations in benign and malignant prostate epithelia
A. Erickson, E. Berglund, M. He, M. Marklund +21 more
2022European Urology0 citations
Semantic Scholar
A Transcriptome Atlas of a Cross Section of a Multifocal Prostate Cancer
E. Berglund, N. Schultz, M. Marklund, Ludvig Bergensthråhle +8 more
20200 citations
Semantic Scholar
Single-Stranded Nucleic Acids Regulate TLR3/4/7 Activation through Interference with Clathrin-Mediated Endocytosis
P. Järver, Aleksandra Dondalska, C. Poux, AnnSofi Sandberg +15 more
2018Scientific Reports0 citations Open access
Semantic Scholar
Spatial Transcriptomics. Digital Pathology to Investigate Intratumor Heterogeneity in Breast Cancer.
Fredrik Salmén, S. Vickovic, Anders Jemt, J. Bergenstråhle +13 more
20160 citations
Semantic Scholar

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J. Lundeberg×23
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J. Lundeberg — researcher profile on SciRah
L. Larsson×14
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L. Bergenstråhle×12
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L. Bergenstråhle — researcher profile on SciRah
K. Thrane×10
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A. Ji — researcher profile on SciRah

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J. Maaskola — researcher profile on SciRah

R. Mirzazadeh×9

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E. Berglund — researcher profile on SciRah

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M. Marklund — researcher profile on SciRah

A. Tanoglidi×8

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