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Mirela Andronescu · SciRah

Researcher profile · Semantic Scholar

Mirela Andronescu

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Mirela Andronescu — researcher profile on SciRah

h-index: 18
Works: 27
Citations: 2,811

Most-cited papers

A Three-Dimensional Model of the Yeast Genome
Z. Duan, Mirela Andronescu, K. Schutz, Sean J. Mcllwain +6 more
2010Nature1,013 citations Open access
Semantic Scholar
RNA STRAND: The RNA Secondary Structure and Statistical Analysis Database
Mirela Andronescu, Vera Bereg, H. Hoos, A. Condon
2008BMC Bioinformatics288 citations Open access
Semantic Scholar
Efficient parameter estimation for RNA secondary structure prediction
Mirela Andronescu, A. Condon, H. Hoos, D. Mathews +1 more
2007ISMB/ECCB205 citations Open access
Semantic Scholar
Secondary structure prediction of interacting RNA molecules.
Mirela Andronescu, Zhi-Chuan Zhang, A. Condon
2005Journal of Molecular Biology203 citations
Semantic Scholar
A new algorithm for RNA secondary structure design.
Mirela Andronescu, Anthony P. Fejes, F. Hutter, H. Hoos +1 more
2004Journal of Molecular Biology193 citations
Semantic Scholar
RNAsoft: a suite of RNA secondary structure prediction and design software tools
Mirela Andronescu, R. Aguirre-Hernández, A. Condon, H. Hoos
2003Nucleic Acids Res.151 citations Open access
Semantic Scholar
Clonal fitness inferred from timeseries modeling of single cell cancer genomes
Sohrab Salehi, Farhia Kabeer, N. Ceglia, Mirela Andronescu +29 more
2021Nature138 citations Open access
Semantic Scholar
Computational approaches for RNA energy parameter estimation.
Mirela Andronescu, A. Condon, H. Hoos, D. Mathews +1 more
2010RNA: A publication of the RNA Society122 citations Open access
Semantic Scholar
Improved free energy parameters for RNA pseudoknotted secondary structure prediction.
Mirela Andronescu, Cristina Pop, A. Condon
2010RNA: A publication of the RNA Society95 citations Open access
Semantic Scholar
Thermodynamically based DNA strand design
D. Tulpan, Mirela Andronescu, S. B. Chang, Michael R. Shortreed +3 more
2005Nucleic Acids Research67 citations Open access
Semantic Scholar
The determination of RNA folding nearest neighbor parameters.
Mirela Andronescu, A. Condon, D. Turner, D. Mathews
2014Methods in molecular biology58 citations
Semantic Scholar
A thermodynamic approach to designing structure-free combinatorial DNA word sets
Michael R. Shortreed, S. B. Chang, DongGee Hong, Maggie E Phillips +6 more
2005Nucleic Acids Research50 citations Open access
Semantic Scholar
A genome-wide 3C-method for characterizing the three-dimensional architectures of genomes
Z. Duan, Mirela Andronescu, K. Schutz, Choli Lee +4 more
2012Methods42 citations Open access
Semantic Scholar
Algorithms for testing that sets of DNA words concatenate without secondary structure
Mirela Andronescu, D. Dees, Laura Slaybaugh, Yinglei Zhao +3 more
2002Natural Computing37 citations
Semantic Scholar
Cancer phylogenetic tree inference at scale from 1000s of single cell genomes
Sohrab Salehi, F. Dorri, Kevin Chern, Farhia Kabeer +11 more
2020bioRxiv30 citations Open access
Semantic Scholar
Algorithms for predicting the secondary structure of pairs and combinatorial sets of nucleic acid strands
Mirela Andronescu
200330 citations
Semantic Scholar
Free energy estimation of short DNA duplex hybridizations
D. Tulpan, Mirela Andronescu, Serge Léger
2010BMC Bioinformatics27 citations Open access
Semantic Scholar
Epiclomal: Probabilistic clustering of sparse single-cell DNA methylation data
Camila P. E. de Souza, Mirela Andronescu, T. Masud, Farhia Kabeer +15 more
2018bioRxiv24 citations Open access
Semantic Scholar
Accurate determination of CRISPR-mediated gene fitness in transplantable tumours
P. Eirew, C. O'Flanagan, J. Ting, Sohrab Salehi +23 more
2022Nature Communications11 citations Open access
Semantic Scholar
Efficient Bayesian inference of phylogenetic trees from large scale, low-depth genome-wide single-cell data
F. Dorri, Sohrab Salehi, Kevin Chern, Tyler Funnell +9 more
202010 citations Open access
Semantic Scholar
Single-cell decoding of drug induced transcriptomic reprogramming in triple negative breast cancers
Farhia Kabeer, Hoa Tran, Mirela Andronescu, Gurdeep Singh +21 more
2023bioRxiv8 citations Open access
Semantic Scholar
Single cell fitness landscapes induced by genetic and pharmacologic perturbations in cancer
Sohrab Salehi, Farhia Kabeer, N. Ceglia, Mirela Andronescu +27 more
2020bioRxiv7 citations Open access
Semantic Scholar
Motif-grasp and motif-ils: two new stochastic local search algorithms for motif finding
Mirela Andronescu, B. Rastegari
20032 citations
Semantic Scholar
Decision Tree Learning Using a Bayesian Approach at Each Node
Mirela Andronescu, Mark Brodie
2009Canadian Conference on AI1 citations
Semantic Scholar
Chromosomal mutational signatures of DNA damaging agents at single cell resolution
Mirela Andronescu, Alex Adrian-Hamazaki, Damian Boon Siew Yap, William Daniels +29 more
2026bioRxiv0 citations Open access
Semantic Scholar
A New Algorithm for RNA Secondary Structure
Mary Mathew, M. Krishna, G. Gopakumar, Mirela Andronescu +5 more
20200 citations
Semantic Scholar
Finding MFE Structures Formed by Nucleic Acid Strands in a Combinatorial Set
Mirela Andronescu, A. Condon
2006Nanotechnology0 citations
Semantic Scholar

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