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Justina Biele · SciRah

Researcher profile · Semantic Scholar

Justina Biele

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Justina Biele — researcher profile on SciRah

h-index: 14
Works: 23
Citations: 3,299

Most-cited papers

PyClone: statistical inference of clonal population structure in cancer
Andrew Roth, J. Khattra, Damian Boon Siew Yap, A. Wan +6 more
2014Nature Methods969 citations Open access
Semantic Scholar
Dynamics of genomic clones in breast cancer patient xenografts at single cell resolution
P. Eirew, A. Steif, J. Khattra, G. Ha +42 more
2014Nature609 citations Open access
Semantic Scholar
TITAN: inference of copy number architectures in clonal cell populations from tumor whole-genome sequence data
G. Ha, Andrew Roth, J. Khattra, J. Ho +17 more
2014Genome Research370 citations Open access
Semantic Scholar
Divergent modes of clonal spread and intraperitoneal mixing in high-grade serous ovarian cancer
Andrew W. McPherson, Andrew Roth, E. Laks, T. Masud +30 more
2016Nature Genetics327 citations
Semantic Scholar
Clonal Decomposition and DNA Replication States Defined by Scaled Single-Cell Genome Sequencing
Emma Laks, Andrew McPherson, Hans Zahn, Daniel Lai +46 more
2019Cell237 citations Open access
Semantic Scholar
Dissociation of solid tumor tissues with cold active protease for single-cell RNA-seq minimizes conserved collagenase-associated stress responses
C. O'Flanagan, Kieran R. Campbell, Allen W. Zhang, Farhia Kabeer +18 more
2019Genome Biology222 citations Open access
Semantic Scholar
Clonal fitness inferred from timeseries modeling of single cell cancer genomes
Sohrab Salehi, Farhia Kabeer, N. Ceglia, Mirela Andronescu +29 more
2021Nature138 citations Open access
Semantic Scholar
Single-cell genomic variation induced by mutational processes in cancer
Tyler Funnell, C. O'Flanagan, Marc J. Williams, Andrew W. McPherson +49 more
2022Nature126 citations Open access
Semantic Scholar
Clonal genotype and population structure inference from single-cell tumor sequencing
Andrew Roth, Andrew W. McPherson, E. Laks, Justina Biele +8 more
2016Nature Methods108 citations
Semantic Scholar
Robust high-performance nanoliter-volume single-cell multiple displacement amplification on planar substrates
K. Leung, Anders Klaus, B. K. Lin, E. Laks +12 more
2016Proceedings of the National Academy of Sciences of the United States of America48 citations Open access
Semantic Scholar
Ubiquitin-mediated DNA damage response is synthetic lethal with G-quadruplex stabilizer CX-5461
T. Masud, C. Soong, Hong Xu, Justina Biele +3 more
2021Scientific Reports27 citations Open access
Semantic Scholar
Dissociation of solid tumour tissues with cold active protease for single-cell RNA-seq minimizes conserved collagenase-associated stress responses
C. O'Flanagan, Kieran R. Campbell, Allen W. Zhang, Farhia Kabeer +17 more
2019bioRxiv26 citations Open access
Semantic Scholar
Epiclomal: Probabilistic clustering of sparse single-cell DNA methylation data
Camila P. E. de Souza, Mirela Andronescu, T. Masud, Farhia Kabeer +15 more
2018bioRxiv24 citations Open access
Semantic Scholar
Resource: Scalable whole genome sequencing of 40,000 single cells identifies stochastic aneuploidies, genome replication states and clonal repertoires
E. Laks, Hans Zahn, Daniel Lai, Andrew W. McPherson +41 more
2018bioRxiv18 citations Open access
Semantic Scholar
clonealign: statistical integration of independent single-cell RNA and DNA sequencing data from human cancers
Kieran R. Campbell, A. Steif, E. Laks, Hans Zahn +13 more
2019Genome Biology15 citations Open access
Semantic Scholar
Accurate determination of CRISPR-mediated gene fitness in transplantable tumours
P. Eirew, C. O'Flanagan, J. Ting, Sohrab Salehi +23 more
2022Nature Communications11 citations Open access
Semantic Scholar
Evolutionary tracking of cancer haplotypes at single-cell resolution
Marc J. Williams, Tyler Funnell, C. O'Flanagan, Andrew W. McPherson +25 more
2021bioRxiv10 citations Open access
Semantic Scholar
Single-cell decoding of drug induced transcriptomic reprogramming in triple negative breast cancers
Farhia Kabeer, Hoa Tran, Mirela Andronescu, Gurdeep Singh +21 more
2023bioRxiv8 citations Open access
Semantic Scholar
Single cell fitness landscapes induced by genetic and pharmacologic perturbations in cancer
Sohrab Salehi, Farhia Kabeer, N. Ceglia, Mirela Andronescu +27 more
2020bioRxiv7 citations Open access
Semantic Scholar
The impact of mutational processes on structural genomic plasticity in cancer cells
Tyler Funnell, C. O'Flanagan, Marc J. Williams, Andrew W. McPherson +39 more
2021bioRxiv6 citations Open access
Semantic Scholar
Abstract PD8-05: Single-cell analysis of breast cancer metastasis using patient-derived xenograft model reveals clonal relationship between primary tumor and its metastases
Hakwoo Lee, Farhia Kabeer, C. O'Flanagan, Jazmine Brimhall +13 more
2020Poster Spotlight Session Abstracts0 citations
Semantic Scholar
clonealign: statistical integration of independent single-cell RNA & DNA-seq from human cancers
Kieran R. Campbell, A. Steif, E. Laks, Hans Zahn +12 more
2018bioRxiv0 citations Open access
Semantic Scholar
populations from tumor whole-genome sequence data TITAN : inference of copy number architectures in clonal cell Material Supplemental
G. Ha, Andrew Roth, J. Khattra, J. Ho +17 more
20140 citations
Semantic Scholar

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