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Yang Liao · SciRah

Researcher profile · Semantic Scholar

Yang Liao

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Yang Liao — researcher profile on SciRah

h-index: 30
Works: 59
Citations: 36K

Most-cited papers

featureCounts: an efficient general purpose program for assigning sequence reads to genomic features
Yang Liao, G. Smyth, Wei Shi
2013Bioinform.25K citations Open access
Semantic Scholar
The Subread aligner: fast, accurate and scalable read mapping by seed-and-vote
Yang Liao, G. Smyth, Wei Shi
2013Nucleic Acids Research2,921 citations Open access
Semantic Scholar
The R package Rsubread is easier, faster, cheaper and better for alignment and quantification of RNA sequencing reads
Yang Liao, G. Smyth, Wei Shi
2018bioRxiv2,645 citations Open access
Semantic Scholar
A comprehensive assessment of RNA-seq accuracy, reproducibility and information content by the Sequencing Quality Control consortium
Zhen-Qiang Su, P. Łabaj, Sheng Li, J. Thierry-Mieg +157 more
2014Nature Biotechnology965 citations Open access
Semantic Scholar
Hobit and Blimp1 instruct a universal transcriptional program of tissue residency in lymphocytes
Laura K. Mackay, M. Minnich, N. Kragten, Yang Liao +21 more
2016Science932 citations Open access
Semantic Scholar
The transcriptional regulators IRF4, BATF and IL-33 orchestrate development and maintenance of adipose tissue–resident regulatory T cells
Ajithkumar Vasanthakumar, K. Moro, A. Xin, Yang Liao +17 more
2015Nature Immunology532 citations
Semantic Scholar
Transcription Factor IRF4 Promotes CD8+ T Cell Exhaustion and Limits the Development of Memory‐like T Cells during Chronic Infection
K. Man, S. Gabriel, Yang Liao, Renee Gloury +8 more
2017Immunity449 citations Open access
Semantic Scholar
Transcriptional profiling of mouse B cell terminal differentiation defines a signature for antibody-secreting plasma cells
Wei Shi, Yang Liao, S. Willis, Nadine Taubenheim +6 more
2015Nature Immunology364 citations
Semantic Scholar
Blimp-1 controls plasma cell function through regulation of immunoglobulin secretion and the unfolded protein response
Julie Tellier, Wei Shi, M. Minnich, Yang Liao +5 more
2016Nature Immunology341 citations Open access
Semantic Scholar
MYB orchestrates T cell exhaustion and response to checkpoint inhibition
Carlson Tsui, Lorenz Kretschmer, Svenja Rapelius, S. Gabriel +18 more
2022Nature239 citations Open access
Semantic Scholar
Sex-specific adipose tissue imprinting of regulatory T cells
Ajithkumar Vasanthakumar, D. Chisanga, Jonas Blume, Renee Gloury +21 more
2020Nature216 citations Open access
Semantic Scholar
A molecular threshold for effector CD8+ T cell differentiation controlled by transcription factors Blimp-1 and T-bet
A. Xin, F. Masson, Yang Liao, Simon P. Preston +15 more
2016Nature Immunology184 citations Open access
Semantic Scholar
c-Maf-dependent Treg cell control of intestinal TH17 cells and IgA establishes host–microbiota homeostasis
C. Neumann, Jonas Blume, Urmi Roy, Peggy P. Teh +23 more
2019Nature Immunology160 citations Open access
Semantic Scholar
Blockade of the co-inhibitory molecule PD-1 unleashes ILC2-dependent anti-tumor immunity in melanoma
N. Jacquelot, Cyril Seillet, Min-Yu Wang, A. Pizzolla +33 more
2021Nature Immunology159 citations Open access
Semantic Scholar
The TNF Receptor Superfamily-NF-κB Axis Is Critical to Maintain Effector Regulatory T Cells in Lymphoid and Non-lymphoid Tissues.
Ajithkumar Vasanthakumar, Yang Liao, Peggy P. Teh, M. Pascutti +17 more
2017Cell Reports131 citations Open access
Semantic Scholar
Assessing technical performance in differential gene expression experiments with external spike-in RNA control ratio mixtures
S. Munro, S. Lund, P. Pine, H. Binder +29 more
2014Nature Communications127 citations Open access
Semantic Scholar
Environmental sensing by mature B cells is controlled by the transcription factors PU.1 and SpiB
S. Willis, Julie Tellier, Yang Liao, S. Trezise +6 more
2017Nature Communications100 citations Open access
Semantic Scholar
Pax5 loss imposes a reversible differentiation block in B-progenitor acute lymphoblastic leukemia
Grace J. Liu, L. Cimmino, J. Jude, Yifang Hu +13 more
2013Genes & Development98 citations Open access
Semantic Scholar
Effector Regulatory T Cell Differentiation and Immune Homeostasis Depend on the Transcription Factor Myb
Sheila Dias, A. D'Amico, Erika Cretney, Yang Liao +8 more
2017Immunity96 citations Open access
Semantic Scholar
Attenuation of TCR-induced transcription by Bach2 controls regulatory T cell differentiation and homeostasis
T. Sidwell, Yang Liao, A. Garnham, Ajithkumar Vasanthakumar +13 more
2020Nature Communications85 citations Open access
Semantic Scholar
IRF4 Activity Is Required in Established Plasma Cells to Regulate Gene Transcription and Mitochondrial Homeostasis.
M. Low, Erica J. Brodie, Pasquale L. Fedele, Yang Liao +11 more
2019Cell Reports71 citations Open access
Semantic Scholar
Dynamic changes in Id3 and E-protein activity orchestrate germinal center and plasma cell development
Renee Gloury, D. Zotos, Malou Zuidscherwoude, F. Masson +9 more
2016Journal of Experimental Medicine70 citations Open access
Semantic Scholar
featureCounts: an efficient general-purpose read summarization program
Yang Liao, G. Smyth, Wei Shi
201368 citations
Semantic Scholar
IMiDs prime myeloma cells for daratumumab-mediated cytotoxicity through loss of Ikaros and Aiolos.
Pasquale L. Fedele, S. Willis, Yang Liao, M. Low +9 more
2018Blood59 citations Open access
Semantic Scholar
TCF-1 limits the formation of Tc17 cells via repression of the MAF–RORγt axis
L. Mielke, Yang Liao, E. B. Clemens, M. Firth +21 more
2019Journal of Experimental Medicine51 citations Open access
Semantic Scholar
Transcription Factor T-bet in B Cells Modulates Germinal Center Polarization and Antibody Affinity Maturation in Response to Malaria.
A. Ly, Yang Liao, H. Pietrzak, L. Ioannidis +11 more
2019Cell Reports51 citations Open access
Semantic Scholar
An update on using CRISPR/Cas9 in the one-cell stage mouse embryo for generating complex mutant alleles
A. Kueh, Martin Pal, L. Tai, Yang Liao +3 more
2017Cell Death and Differentiation46 citations Open access
Semantic Scholar
Erratum: The transcriptional regulators IRF4, BATF and IL-33 orchestrate development and maintenance of adipose tissue–resident regulatory T cells
Ajithkumar Vasanthakumar, K. Moro, A. Xin, Yang Liao +17 more
2015Nature Immunology41 citations Open access
Semantic Scholar
Dividing out quantification uncertainty allows efficient assessment of differential transcript expression with edgeR
Pedro L. Baldoni, Yun-Shun Chen, S. Hediyeh-zadeh, Yang Liao +4 more
2023bioRxiv40 citations Open access
Semantic Scholar
Read trimming is not required for mapping and quantification of RNA-seq reads at the gene level
Yang Liao, Wei Shi
2019bioRxiv33 citations Open access
Semantic Scholar
The transcription factor IRF4 represses proapoptotic BMF and BIM to licence multiple myeloma survival
Pasquale L. Fedele, Yang Liao, J. Gong, Yuan Yao +14 more
2020Leukemia30 citations
Semantic Scholar
IMiDs through loss of Ikaros and Aiolos primes myeloma cells for daratumumab mediated killing by upregulation of CD 38
Pasquale L. Fedele, S. Willis, Yang Liao, M. Low +12 more
201827 citations
Semantic Scholar
Mining the Plasma Cell Transcriptome for Novel Cell Surface Proteins
S. Trezise, A. Karnowski, Pasquale L. Fedele, S. Mithraprabhu +11 more
2018International Journal of Molecular Sciences26 citations Open access
Semantic Scholar
Epithelial de-differentiation triggered by co-ordinate epigenetic inactivation of the EHF and CDX1 transcription factors drives colorectal cancer progression
Ian Y Luk, Laura J Jenkins, Kael Schoffer, I. Ng +28 more
2022Cell Death and Differentiation20 citations Open access
Semantic Scholar
Impact of gene annotation choice on the quantification of RNA-seq data
D. Chisanga, Yang Liao, Wei Shi
2021BMC Bioinformatics19 citations Open access
Semantic Scholar
Tailored NEOadjuvant epirubicin, cyclophosphamide and Nanoparticle Albumin-Bound paclitaxel for breast cancer: The phase II NEONAB trial—Clinical outcomes and molecular determinants of response
Caitlin Murphy, Andrea M. Muscat, D. Ashley, Violet Mukaro +9 more
2019PLoS ONE19 citations Open access
Semantic Scholar
Plasmacytoid dendritic cell heterogeneity is defined by CXCL10 expression following TLR7 stimulation
Casper Marsman, F. Lafouresse, Yang Liao, T. Baldwin +7 more
2018Immunology and Cell Biology17 citations Open access
Semantic Scholar
Molecular profiling reveals features of clinical immunity and immunosuppression in asymptomatic P. falciparum malaria
Stephanie I. Studniberg, L. Ioannidis, Retno A. S. Utami, L. Trianty +20 more
2022Molecular Systems Biology14 citations Open access
Semantic Scholar
Transcription Factor IRF 4 Promotes CD 8 + T Cell Exhaustion and Limits the Development of Memory-like T Cells during Chronic Infection Graphical
K. Man, S. Gabriel, Yang Liao, Renee Gloury +8 more
201914 citations
Semantic Scholar
Integrated systems immunology approach identifies impaired effector T cell memory responses as a feature of progression to severe dengue fever
L. Ioannidis, Stephanie I. Studniberg, E. Eriksson, Suhendro Suwarto +6 more
2023Journal of Biomedical Sciences12 citations Open access
Semantic Scholar
A point mutation in the Ncr1 signal peptide impairs the development of innate lymphoid cell subsets
F. F. Almeida, S. Tognarelli, A. Marçais, A. Kueh +28 more
2018Oncoimmunology12 citations Open access
Semantic Scholar
cellCounts: an R function for quantifying 10x Chromium single-cell RNA sequencing data
Yang Liao, Dinesh Raghu, B. Pal, L. Mielke +1 more
2023Bioinform.10 citations Open access
Semantic Scholar
Quantitative proteomic profiling reveals novel region‐specific markers in the adult mouse brain
L. F. Dagley, Carl A. White, Yang Liao, Wei Shi +4 more
2014Proteomics10 citations
Semantic Scholar
Subread/Rsubread Users Guide
Wei Shi, Yang Liao
20165 citations
Semantic Scholar
Induction of endoplasmic reticulum stress is associated with the anti‐tumor activity of monepantel across cancer types
Tiffany J. Harris, Yang Liao, Wei Shi, M. Evangelista +7 more
2023Cancer Medicine4 citations Open access
Semantic Scholar
Loss of IRF4 Results in Multiple Myeloma Cell Apoptosis through the Transcriptional up-Regulation of the BH3-Only Proteins Bmf and BIM
Pasquale L. Fedele, Yang Liao, J. Gong, M. V. van Delft +9 more
2019Blood4 citations Open access
Semantic Scholar
CD137L and CD4 T cells limit BCL6‐expressing pre‐germinal center B cell expansion and BCL6‐driven B cell malignancy
Zhou-Jie Ding, Isaak Quast, Feng Yan, Yang Liao +7 more
2022Immunology and Cell Biology3 citations Open access
Semantic Scholar
Author Correction: Sex-specific adipose tissue imprinting of regulatory T cells
Ajithkumar Vasanthakumar, D. Chisanga, Jonas Blume, Renee Gloury +21 more
2021Nature3 citations Open access
Semantic Scholar
Author Correction: c-Maf-dependent Treg cell control of intestinal TH17 cells and IgA establishes host–microbiota homeostasis
C. Neumann, Jonas Blume, Urmi Roy, Peggy P. Teh +23 more
2024Nature Immunology1 citations Open access
Semantic Scholar
Genome-wide in vivo CRISPR screens identify GATOR1 as a TP53 induced tumour suppressor
S. Mizutani, Margaret A. Potts, Yexuan Deng, Göknur Giner +14 more
20211 citations
Semantic Scholar

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