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Songling Li · SciRah

Researcher profile · Semantic Scholar

Songling Li

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Songling Li — researcher profile on SciRah

h-index: 19
Works: 47
Citations: 2,271

Most-cited papers

MAFFT-DASH: integrated protein sequence and structural alignment
J. Rozewicki, Songling Li, Karlou Mar Amada, D. Standley +1 more
2019Nucleic Acids Res.890 citations Open access
Semantic Scholar
An infectivity-enhancing site on the SARS-CoV-2 spike protein targeted by antibodies
Ya-Fei Liu, W. T. Soh, J. Kishikawa, M. Hirose +32 more
2021Cell246 citations Open access
Semantic Scholar
TLR4-induced NF-κB and MAPK signaling regulate the IL-6 mRNA stabilizing protein Arid5a
K. Nyati, K. Masuda, M. M. Zaman, P. Dubey +8 more
2017Nucleic Acids Research182 citations Open access
Semantic Scholar
Improved prediction of lysine acetylation by support vector machines.
Songling Li, Hong Li, Ming-Fa Li, Y. Shyr +2 more
2009Protein Peptide Letters86 citations
Semantic Scholar
A model for Escherichia coli chromosome packaging supports transcription factor-induced DNA domain formation
Miriam Fritsche, Songling Li, D. Heermann, Paul A. Wiggins
2011Nucleic Acids Research82 citations Open access
Semantic Scholar
Quantifying sequence and structural features of protein–RNA interactions
Songling Li, Kazuo Yamashita, Karlou Mar Amada, D. Standley
2014Nucleic Acids Research77 citations Open access
Semantic Scholar
Structural basis for the assembly of the Ragulator-Rag GTPase complex
R. Yonehara, S. Nada, T. Nakai, M. Nakai +9 more
2017Nature Communications72 citations Open access
Semantic Scholar
An engineered ACE2 decoy neutralizes the SARS-CoV-2 Omicron variant and confers protection against infection in vivo
Nariko Ikemura, S. Taminishi, T. Inaba, T. Arimori +14 more
2022Science Translational Medicine59 citations Open access
Semantic Scholar
Modeling of stimuli-responsive nanoreactors: rational rate control towards the design of colloidal enzymes
Dimitri Schritt, Songling Li, J. Rozewicki, K. Katoh +4 more
2019Molecular Systems Design & Engineering46 citations Open access
Semantic Scholar
Noncanonical STAT1 phosphorylation expands its transcriptional activity into promoting LPS-induced IL-6 and IL-12p40 production
H. Metwally, Toshio Tanaka, Songling Li, Gyanu Parajuli +7 more
2020Science Signaling45 citations
Semantic Scholar
Arid5a stabilizes OX40 mRNA in murine CD4+ T cells by recognizing a stem‐loop structure in its 3′UTR
Hamza Hanieh, K. Masuda, H. Metwally, J. Chalise +7 more
2018European Journal of Immunology43 citations Open access
Semantic Scholar
Dysregulated Expression of the Nuclear Exosome Targeting Complex Component Rbm7 in Nonhematopoietic Cells Licenses the Development of Fibrosis.
K. Fukushima, T. Satoh, Fuminori Sugihara, Yuki Sato +16 more
2020Immunity42 citations Open access
Semantic Scholar
Flexible, Functional, and Familiar: Characteristics of SARS-CoV-2 Spike Protein Evolution
Dianita S. Saputri, Songling Li, Floris J. van Eerden, J. Rozewicki +6 more
2020Frontiers in Microbiology36 citations Open access
Semantic Scholar
The SARS-CoV-2 Delta variant is poised to acquire complete resistance to wild-type spike vaccines
Ya-Fei Liu, N. Arase, J. Kishikawa, M. Hirose +20 more
2021bioRxiv33 citations Open access
Semantic Scholar
AbAdapt: an adaptive approach to predicting antibody–antigen complex structures from sequence
Ana Davila, Zichang Xu, Songling Li, J. Rozewicki +5 more
2022Bioinformatics Advances31 citations Open access
Semantic Scholar
Methods for sequence and structural analysis of B and T cell receptor repertoires
Shunsuke Teraguchi, Dianita S. Saputri, M. Llamas-Covarrubias, Ana Davila +11 more
2020Computational and Structural Biotechnology Journal31 citations Open access
Semantic Scholar
Clonal evolution and antigen recognition of anti-nuclear antibodies in acute systemic lupus erythematosus
S. Sakakibara, T. Arimori, Kazuo Yamashita, Hideyuki Jinzai +11 more
2017Scientific Reports30 citations Open access
Semantic Scholar
Expression of the readthrough transcript CiDRE in alveolar macrophages boosts SARS-CoV-2 susceptibility and promotes COVID-19 severity.
Y. Mitsui, Tatsuya Suzuki, Kanako Kuniyoshi, J. Inamo +21 more
2023Immunity23 citations Open access
Semantic Scholar
Nanchung and Inactive define pore properties of the native auditory transduction channel in Drosophila
Bing-Xue Li, Songling Li, Hong-Lan Zheng, Zhiqiang Yan
2021Proceedings of the National Academy of Sciences of the United States of America19 citations Open access
Semantic Scholar
Structural Modeling of Lymphocyte Receptors and Their Antigens.
Songling Li, Jan Wilamowski, Shunsuke Teraguchi, Floris J. van Eerden +5 more
2019Methods in molecular biology19 citations
Semantic Scholar
Hepatitis C virus modulates signal peptide peptidase to alter host protein processing
Junki Hirano, S. Yoshio, Yusuke Sakai, Songling Li +19 more
2021Proceedings of the National Academy of Sciences of the United States of America18 citations Open access
Semantic Scholar
Histone methyltransferase KMT5C drives liver cancer progression and directs therapeutic response to PARP inhibitors
Yu Tong, Fan Wang, Songling Li, Wenyun Guo +7 more
2023Hepatology16 citations
Semantic Scholar
An infectivity-enhancing site on the SARS-CoV-2 spike protein is targeted by COVID-19 patient antibodies
Ya-Fei Liu, W. T. Soh, Asa Tada, Akemi Arakawa +21 more
2020bioRxiv16 citations Open access
Semantic Scholar
Landscape of infection enhancing antibodies in COVID-19 and healthy donors
Hendra S. Ismanto, Zichang Xu, Dianita S. Saputri, Jan Wilamowski +6 more
2022bioRxiv13 citations Open access
Semantic Scholar
Functional clustering of B cell receptors using sequence and structural features
Zichang Xu, Songling Li, J. Rozewicki, Kazuo Yamashita +6 more
2019Molecular Systems Design & Engineering13 citations Open access
Semantic Scholar
Structural Determinants of the APOBEC3G N-Terminal Domain for HIV-1 RNA Association
Hirofumi Fukuda, Songling Li, L. Sardo, Jessica L. Smith +6 more
2019Frontiers in Cellular and Infection Microbiology13 citations Open access
Semantic Scholar
Various miRNAs compensate the role of miR-122 on HCV replication
Chikako Ono, T. Fukuhara, Songling Li, Jian Wang +8 more
2020PLoS Pathogens12 citations Open access
Semantic Scholar
Engineered ACE2 counteracts vaccine-evading SARS-CoV-2 Omicron variant
Nariko Ikemura, S. Taminishi, T. Inaba, T. Arimori +14 more
2021bioRxiv11 citations Open access
Semantic Scholar
RNA-LIM: a novel procedure for analyzing protein/single-stranded RNA propensity data with concomitant estimation of interface structure.
Damien Hall, Songling Li, Kazuo Yamashita, Ryuzo Azuma +2 more
2015Analytical Biochemistry11 citations
Semantic Scholar
Transcriptional regulatory network shapes the genome structure of Saccharomyces cerevisiae
Songling Li, D. Heermann
2013The Nucleus11 citations Open access
Semantic Scholar
Cyclin J–CDK complexes limit innate immune responses by reducing proinflammatory changes in macrophage metabolism
Y. K. Chong, Sarang Tartey, Yuki Yoshikawa, Koshi Imami +14 more
2022Science Signaling9 citations
Semantic Scholar
Enhancement of SARS-CoV-2 Infection via Crosslinking of Adjacent Spike Proteins by N-Terminal Domain-Targeting Antibodies
Tina Lusiany, Tohru Terada, J. Kishikawa, Mika Hirose +10 more
2023Viruses7 citations Open access
Semantic Scholar
InterClone: Store, Search and Cluster Adaptive Immune Receptor Repertoires
Jan Wilamowski, Zichang Xu, Hendra S. Ismanto, Songling Li +5 more
2022bioRxiv6 citations Open access
Semantic Scholar
Axonemal Dynein DNAH5 is Required for Sound Sensation in Drosophila Larvae
Bing-Xue Li, Songling Li, Zhiqiang Yan
2021Neuroscience Bulletin6 citations Open access
Semantic Scholar
The evolution of structural genomics
D. Standley, Tokuichiro Nakanishi, Zichang Xu, Soichiro Haruna +3 more
2022Biophysical Reviews5 citations Open access
Semantic Scholar
A novel protein distance matrix based on the minimum arc-length between two amino-acid residues on the surface of a globular protein.
Damien Hall, Songling Li, Kazuo Yamashita, Ryuzo Azuma +2 more
2014Biophysical Chemistry5 citations
Semantic Scholar
CiDRE+ M2c macrophages hijacked by SARS-CoV-2 cause COVID-19 severity
Y. Mitsui, Tatsuya Suzuki, Kanako Kuniyoshi, J. Inamo +19 more
2022bioRxiv4 citations Open access
Semantic Scholar
Using Chimaeric Expression Sequence Tag as the Reference to Identify Three-Dimensional Chromosome Contacts
Songling Li, D. Heermann
2012DNA Research4 citations Open access
Semantic Scholar
Deep mutational scanning of whole SARS-CoV-2 spike in an inverted infection system
S. Taminishi, Songling Li, Y. Higuchi, Yuhei Kirita +10 more
2023bioRxiv1 citations Open access
Semantic Scholar
Acquisition of resistance to wild-type spike-immune sera by emerging SARS-CoV-2 variants
H. Arase, Ya-Fei Liu, N. Arase, J. Kishikawa +21 more
20211 citations Open access
Semantic Scholar
Structure-based screening of drug candidates targeting the SARS-CoV-2 envelope protein
Xin Xia, Yuwei Zhang, Songling Li, Hengwei Lin +1 more
2021bioRxiv1 citations Open access
Semantic Scholar
Analysis of Protein Intermolecular Interactions with MAFFT-DASH.
J. Rozewicki, Songling Li, K. Katoh, D. Standley
2021Methods in molecular biology1 citations
Semantic Scholar
Chapter 19 – Modeling Biocatalysts
Dimitri Schritt, K. Katoh, Songling Li, D. Standley
20171 citations
Semantic Scholar
Various miRNAs are involved in efficient HCV replication
Chikako Ono, T. Fukuhara, Songling Li, Jian Wang +8 more
2020bioRxiv0 citations Open access
Semantic Scholar
Crystal structure of human heteropentameric complex
R. Yonehara, S. Nada, T. Nakai, M. Nakai +9 more
20170 citations
Semantic Scholar
Crystal structure of human heteroheptameric complex
R. Yonehara, S. Nada, T. Nakai, M. Nakai +9 more
20170 citations
Semantic Scholar
From Genome-wide Probabilistic Functional Networks to a Model for Physical Chromosome Interactions
Songling Li
20120 citations
Semantic Scholar

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