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Xin-Yun Li · SciRah

Researcher profile · Semantic Scholar

Xin-Yun Li

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Xin-Yun Li — researcher profile on SciRah

h-index: 33
Works: 137
Citations: 4,261

Most-cited papers

rMVP: A Memory-efficient, Visualization-enhanced, and Parallel-accelerated Tool for Genome-wide Association Study
Li-Lin Yin, Hao-Hao Zhang, Zhen-Shuang Tang, Jing-Ya Xu +7 more
2020bioRxiv1,081 citations Open access
Semantic Scholar
A compendium and comparative epigenomics analysis of cis-regulatory elements in the pig genome
Yun-Xia Zhao, Ye Hou, Yueyuan Xu, Yu Luan +12 more
2021Nature Communications119 citations Open access
Semantic Scholar
HIBLUP: an integration of statistical models on the BLUP framework for efficient genetic evaluation using big genomic data
Li-Lin Yin, Hao-Hao Zhang, Zhen-Shuang Tang, D. Yin +5 more
2023Nucleic Acids Research109 citations Open access
Semantic Scholar
KAML: improving genomic prediction accuracy of complex traits using machine learning determined parameters
Li-Lin Yin, Hao-Hao Zhang, Xiang Zhou, Xiaohui Yuan +3 more
2020Genome Biology93 citations Open access
Semantic Scholar
CRISPR screening of porcine sgRNA library identifies host factors associated with Japanese encephalitis virus replication
Changzhi Zhao, Hai-Long Liu, T. Xiao, Zichang Wang +13 more
2020Nature Communications88 citations Open access
Semantic Scholar
Prostate Luminal Progenitor Cells in Development and Cancer
Ding-Xiao Zhang, Shu-Hong Zhao, Xin-Yun Li, J. Kirk +1 more
2018Trends in Cancer83 citations Open access
Semantic Scholar
Integrative analysis of transcriptomic and metabolomic profiles reveal the complex molecular regulatory network of meat quality in Enshi black pigs.
Huiwen Zhan, Youcai Xiong, Zichang Wang, Wenjun Dong +5 more
2021Meat Science75 citations
Semantic Scholar
A gene prioritization method based on a swine multi-omics knowledgebase and a deep learning model
Yu-Hua Fu, Jing-Ya Xu, Zhen-Shuang Tang, Lu Wang +16 more
2020Communications Biology74 citations Open access
Semantic Scholar
Application of CRISPR-Cas12a enhanced fluorescence assay coupled with nucleic acid amplification for the sensitive detection of African swine fever virus.
D. Tao, Jiajia Liu, Xiongwei Nie, Bingrong Xu +12 more
2020ACS Synthetic Biology69 citations
Semantic Scholar
A survey of transcriptome complexity in Sus scrofa using single-molecule long-read sequencing
Yao Li, Cheng-Chi Fang, Yu-Hua Fu, An Hu +6 more
2018DNA Research66 citations Open access
Semantic Scholar
Rapid Visual CRISPR Assay: A Naked-Eye Colorimetric Detection Method for Nucleic Acids Based on CRISPR/Cas12a and a Convolutional Neural Network
Sheng-Song Xie, D. Tao, Yu-Hua Fu, Bingrong Xu +15 more
2021bioRxiv65 citations Open access
Semantic Scholar
CRISPR-offinder: a CRISPR guide RNA design and off-target searching tool for user-defined protospacer adjacent motif
Changzhi Zhao, Xiaoguo Zheng, Wu-Bin Qu, Guanglei Li +11 more
2017International Journal on Biological Sciences60 citations Open access
Semantic Scholar
Genome-Wide Association Study Reveals Candidate Genes for Growth Relevant Traits in Pigs
Zhen-Shuang Tang, Jing-Ya Xu, Li-Lin Yin, D. Yin +5 more
2019Frontiers in Genetics56 citations Open access
Semantic Scholar
The NF-κB-modulated microRNAs miR-195 and miR-497 inhibit myoblast proliferation by targeting Igf1r, Insr and cyclin genes
Wei Wei, Wei-Ya Zhang, Jian-Bo Bai, Hai-Xia Zhang +3 more
2016Journal of Cell Science55 citations
Semantic Scholar
Weighted single-step GWAS identified candidate genes associated with semen traits in a Duroc boar population
Ning Gao, Yi-Long Chen, Xiaohong Liu, Yunxiang Zhao +8 more
2019BMC Genomics53 citations Open access
Semantic Scholar
Proteomic analysis indicates that mitochondrial energy metabolism in skeletal muscle tissue is negatively correlated with feed efficiency in pigs
Liangliang Fu, Yueyuan Xu, Ye Hou, Xiao-Long Qi +8 more
2017Scientific Reports47 citations Open access
Semantic Scholar
IAnimal: a cross-species omics knowledgebase for animals
Yu-Hua Fu, Hong Liu, Jing-Wen Dou, Yue Wang +28 more
2022Nucleic Acids Res.42 citations Open access
Semantic Scholar
Genome-wide analysis of expression QTL (eQTL) and allele-specific expression (ASE) in pig muscle identifies candidate genes for meat quality traits
Yan Liu, Xiao-Lei Liu, Zhi-Wei Zheng, T. Ma +8 more
2020Genetics Selection Evolution42 citations Open access
Semantic Scholar
Transcriptome Analysis Reveals that Vitamin A Metabolism in the Liver Affects Feed Efficiency in Pigs
Yun-Xia Zhao, Ye Hou, Fei Liu, An Liu +6 more
2016G3: Genes, Genomes, Genetics39 citations Open access
Semantic Scholar
Enhancer-promoter interaction maps provide insights into skeletal muscle-related traits in pig genome
Jingjin Li, Yue Xiang, Lu Zhang, Xiao-Long Qi +10 more
2022BMC Biology38 citations Open access
Semantic Scholar
sRNAPrimerDB: comprehensive primer design and search web service for small non-coding RNAs
Sheng-Song Xie, Qin Zhu, Wu-Bin Qu, Zhong Xu +13 more
2018Bioinform.38 citations
Semantic Scholar
Transcriptome Analysis of Adipose Tissue Indicates That the cAMP Signaling Pathway Affects the Feed Efficiency of Pigs
Yueyuan Xu, Xiao-Long Qi, Ming-Yang Hu, R. Lin +7 more
2018Genes36 citations Open access
Semantic Scholar
Identifying candidate genes associated with sperm morphology abnormalities using weighted single-step GWAS in a Duroc boar population.
Yunxiang Zhao, Ning Gao, Xin-Yun Li, Saeed el-Ashram +7 more
2020Theriogenology34 citations
Semantic Scholar
Development of a Naked Eye CRISPR-Cas12a and -Cas13a Multiplex Point-of-Care Detection of Genetically Modified Swine.
Yuan Wang, Lanting Fu, D. Tao, Xiaosong Han +13 more
2023ACS Synthetic Biology33 citations
Semantic Scholar
Whole genome variants across 57 pig breeds enable comprehensive identification of genetic signatures that underlie breed features
Jing-Ya Xu, Yu-Hua Fu, Y. Hu, Li-Lin Yin +8 more
2020Journal of Animal Science and Biotechnology31 citations Open access
Semantic Scholar
Detection of Four Porcine Enteric Coronaviruses Using CRISPR-Cas12a Combined with Multiplex Reverse Transcriptase Loop-Mediated Isothermal Amplification Assay
Jiajia Liu, D. Tao, Xinquan Chen, Lin-Yuan Shen +8 more
2022Viruses30 citations Open access
Semantic Scholar
miR-208b modulating skeletal muscle development and energy homoeostasis through targeting distinct targets
Liangliang Fu, Heng Wang, Yinlong Liao, Peng Zhou +5 more
2020RNA Biology30 citations Open access
Semantic Scholar
Synergistic effects of TGFβ2, WNT9a, and FGFR4 signals attenuate satellite cell differentiation during skeletal muscle development
Weiya Zhang, Yueyuan Xu, Lu Zhang, Sheng Wang +3 more
2018Aging Cell30 citations Open access
Semantic Scholar
An Inexpensive CRISPR-Based Point-of-Care Test for the Identification of Meat Species and Meat Products
D. Tao, Xiao Xiao, Xiaochen Lan, Bingrong Xu +12 more
2022Genes27 citations Open access
Semantic Scholar
Neuronal Signal Transduction-Involved Genes in Pig Hypothalamus Affect Feed Efficiency as Revealed by Transcriptome Analysis
Ye Hou, Ming-Yang Hu, Huanhuan Zhou, Chang-Chun Li +4 more
2018BioMed Research International26 citations Open access
Semantic Scholar
Genome-Scale CRISPR Knockout Screening Identifies BACH1 as a Key Regulator of Aflatoxin B1-Induced Oxidative Damage
Jin-Fu Zhang, Si-Yi Hu, Changzhi Zhao, Yuan Zhou +15 more
2022Antioxidants24 citations Open access
Semantic Scholar
Genome-scale CRISPR screen identifies TRIM2 and SLC35A1 associated with porcine epidemic diarrhoea virus infection.
Jie-Ru Wang, Hai-Long Liu, Yuqing Yang, Yubei Tan +17 more
2023International Journal of Biological Macromolecules23 citations
Semantic Scholar
Retinoic acid and RARγ maintain satellite cell quiescence through regulation of translation initiation
Wen-Zhe Luo, Yueyuan Xu, Rui-Ge Liu, Yinlong Liao +4 more
2022Cell Death and Disease23 citations Open access
Semantic Scholar
Transcriptome Analysis of Potential miRNA Involved in Adipogenic Differentiation of C2C12 Myoblasts.
Ye Hou, Liangliang Fu, Jingjin Li, Jingxuan Li +7 more
2018Lipids23 citations
Semantic Scholar
Selective sweep analysis reveals extensive parallel selection traits between large white and Duroc pigs
Sai-Xian Zhang, Kaili Zhang, Xia Peng, Huiwen Zhan +5 more
2020Evolutionary Applications22 citations Open access
Semantic Scholar
The DNA Methylation Status of Wnt and Tgfβ Signals Is a Key Factor on Functional Regulation of Skeletal Muscle Satellite Cell Development
Weiya Zhang, Sai-Xian Zhang, Yueyuan Xu, Yun-Long Ma +3 more
2019Frontiers in Genetics22 citations Open access
Semantic Scholar
Genomic Analysis To Identify Signatures of Artificial Selection and Loci Associated with Important Economic Traits in Duroc Pigs
Yun-Long Ma, Sai-Xian Zhang, Kaili Zhang, Cheng-Chi Fang +5 more
2018G3: Genes, Genomes, Genetics22 citations Open access
Semantic Scholar
AGIDB: a versatile database for genotype imputation and variant decoding across species
Kaili Zhang, Jie Liang, Yu-Hua Fu, Jin-Yu Chu +17 more
2023Nucleic Acids Research21 citations Open access
Semantic Scholar
Genome-Wide Association Study and Fine Mapping Reveals Candidate Genes for Birth Weight of Yorkshire and Landrace Pigs
Yong Li, Bin Li, Manman Yang, Hu Han +10 more
2020Frontiers in Genetics21 citations Open access
Semantic Scholar
Population size may shape the accumulation of functional mutations following domestication
Jian-Hai Chen, Pan Ni, Xin-Yun Li, Jian-Lin Han +3 more
2018BMC Evolutionary Biology21 citations Open access
Semantic Scholar
miR-124 attenuates Japanese encephalitis virus replication by targeting DNM2
Song-Bai Yang, Yue Pei, Xin-Yun Li, Shu-Hong Zhao +2 more
2016Virology Journal21 citations Open access
Semantic Scholar
The advancements, challenges, and future implications of the CRISPR/Cas9 system in swine research.
Jin-Fu Zhang, E. M. Khazalwa, Hussein M. Abkallo, Yuan Zhou +10 more
2021Journal of genetics and genomics = Yi chuan xue bao20 citations
Semantic Scholar
H3K27me3 Depletion during Differentiation Promotes Myogenic Transcription in Porcine Satellite Cells
Sheng Wang, Yan Sun, Ruimin Ren, Junhui Xie +4 more
2019Genes20 citations Open access
Semantic Scholar
Identifying Selection Signatures for Backfat Thickness in Yorkshire Pigs Highlights New Regions Affecting Fat Metabolism
Haoran Ma, Sai-Xian Zhang, Kaili Zhang, Huiwen Zhan +5 more
2019Genes20 citations Open access
Semantic Scholar
Integrated analysis of genome-wide association studies and 3D epigenomic characteristics reveal the BMP2 gene regulating loin muscle depth in Yorkshire pigs
Yuanxin Miao, Yun-Xia Zhao, Siqi Wan, Q. Mei +6 more
2023PLoS Genetics19 citations Open access
Semantic Scholar
Genome-wide association and transcriptome studies identify candidate genes and pathways for feed conversion ratio in pigs
Yuanxin Miao, Q. Mei, Chuan-Ke Fu, M. Liao +5 more
2021BMC Genomics19 citations Open access
Semantic Scholar
Enhancing the antibacterial activities of sow milk via site-specific knock-in of a lactoferrin gene in pigs using CRISPR/Cas9 technology
Xiaosong Han, Yang Gao, Guanglei Li, Youcai Xiong +7 more
2020Cell & Bioscience19 citations Open access
Semantic Scholar
hibayes: An R Package to Fit Individual-Level, Summary-Level and Single-Step Bayesian Regression Models for Genomic Prediction and Genome-Wide Association Studies
Li-Lin Yin, Hao-Hao Zhang, Xin-Yun Li, Shu-Hong Zhao +1 more
2022bioRxiv18 citations Open access
Semantic Scholar
Fibroblast Growth Factor 21 Promotes C2C12 Cells Myogenic Differentiation by Enhancing Cell Cycle Exit
Xinyi Liu, Yong-Liang Wang, Shu-Hong Zhao, Xin-Yun Li
2017BioMed Research International18 citations Open access
Semantic Scholar
Characterization of the Promoter Regions of Two Sheep Keratin-Associated Protein Genes for Hair Cortex-Specific Expression
Zhi-Chao Zhao, Guang-Bin Liu, Xin-Yun Li, Ji Huang +3 more
2016PLoS ONE18 citations Open access
Semantic Scholar

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