Researcher profile · Semantic Scholar

Vanja Haberle

h-index: 14
Works: 25
Citations: 4,077

Most-cited papers

A promoter-level mammalian expression atlas
A. Forrest, H. Kawaji, M. Rehli, J. Baillie +256 more
2014Nature1,977 citations Open access
Semantic Scholar
Eukaryotic core promoters and the functional basis of transcription initiation
Vanja Haberle, A. Stark
2018Nature reviews. Molecular cell biology627 citations Open access
Semantic Scholar
CAGEr: an R package for CAGE (Cap Analysis of Gene Expression) data analysis and promoterome mining
Vanja Haberle
2013255 citations
Semantic Scholar
Epigenetic reprogramming enables the primordial germ cell-to-gonocyte transition
Peter W. S. Hill, Harry G. Leitch, Cristina E. Requena, Zhiyi Sun +13 more
2018Nature206 citations Open access
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Resolving systematic errors in widely-used enhancer activity assays in human cells
Felix Muerdter, Łukasz M. Boryń, Ashley R Woodfin, Christoph Neumayr +9 more
2017Nature Methods186 citations Open access
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Two independent transcription initiation codes overlap on vertebrate core promoters
Vanja Haberle, Nan Li, Yavor Hadzhiev, C. Plessy +13 more
2014Nature179 citations Open access
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Dynamic regulation of the transcription initiation landscape at single nucleotide resolution during vertebrate embryogenesis
Chirag Nepal, Yavor Hadzhiev, C. Previti, Vanja Haberle +19 more
2013Genome Research128 citations Open access
Semantic Scholar
The aurora B kinase and the polycomb protein ring1B combine to regulate active promoters in quiescent lymphocytes.
Alberto Frangini, Marcela K. Sjöberg, M. Román-Trufero, G. Dharmalingam +6 more
2013Molecules and Cells125 citations Open access
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Transcriptional cofactors display specificity for distinct types of core promoters
Vanja Haberle, Cosmas D. Arnold, Michaela Pagani, Martina Rath +2 more
2019Nature117 citations Open access
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Differential cofactor dependencies define distinct types of human enhancers
Christoph Neumayr, Vanja Haberle, Leonid Serebreni, Katharina Karner +12 more
2022Nature86 citations Open access
Semantic Scholar
Promoter architectures and developmental gene regulation.
Vanja Haberle, B. Lenhard
2016Seminars in Cell and Developmental Biology72 citations Open access
Semantic Scholar
Genome-wide DNA methylation profiling of non-small cell lung carcinomas
R. H. Carvalho, Vanja Haberle, Jun Hou, T. van Gent +12 more
2012Epigenetics & Chromatin64 citations Open access
Semantic Scholar
Genomewide DNA Methylation Analysis Identifies Novel Methylated Genes in Non–Small-Cell Lung Carcinomas
R. H. Carvalho, Jun Hou, Vanja Haberle, J. Aerts +3 more
2013Journal of Thoracic Oncology24 citations Open access
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Functionally distinct promoter classes initiate transcription via different mechanisms reflected in focused versus dispersed initiation patterns
Leonid Serebreni, L. Pleyer, Vanja Haberle, Oliver Hendy +7 more
2022bioRxiv18 citations Open access
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Dissecting genomic regulatory elements in vivo
Vanja Haberle, B. Lenhard
2012Nature Biotechnology13 citations
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STARR-seq Screening protocol
Felix Muerdter, Łukasz M. Boryń, Ashley R Woodfin, Christoph Neumayr +9 more
20171 citations Open access
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STARR-seq Library Preparation
Felix Muerdter, Łukasz M. Boryń, Ashley R Woodfin, Christoph Neumayr +9 more
20171 citations Open access
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qPCR assay to measure ISG expression in human cells
Felix Muerdter, Łukasz M. Boryń, Ashley R Woodfin, Christoph Neumayr +9 more
20171 citations Open access
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qPCR based reporter assay on luciferase transcripts
Felix Muerdter, Łukasz M. Boryń, Ashley R Woodfin, Christoph Neumayr +9 more
20171 citations Open access
Semantic Scholar
Coordinating the human looks.
Vanja Haberle, A. Stark
2015Cell1 citations Open access
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Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network
Albert S. B. Edge, M. Edinger, Anna Ehrlund, Karl Ekwall +205 more
20220 citations
Semantic Scholar
Author Correction: Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network
Mathys Grapotte, Manu Saraswat, Chloé Bessière, Christophe Menichelli +485 more
2022Nature Communications0 citations Open access
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Overlapping transcription initiation codes and promoter interpretation in vertebrate development and differentiation
Vanja Haberle
20150 citations
Semantic Scholar
seqPattern: an R package for visualisation of oligonucleotide sequence patterns and motif occurrences
Vanja Haberle
20150 citations
Semantic Scholar
single nucleotide resolution during vertebrate embryogenesis Dynamic regulation of the transcription initiation landscape at Material Supplemental
Chirag Nepal, Yavor Hadzhiev, C. Previti, Vanja Haberle +19 more
20130 citations
Semantic Scholar

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