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Justine Michaux · SciRah

Researcher profile · Semantic Scholar

Justine Michaux

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Justine Michaux — researcher profile on SciRah

h-index: 23
Works: 37
Citations: 2,216

Most-cited papers

Integrated proteogenomic deep sequencing and analytics accurately identify non-canonical peptides in tumor immunopeptidomes
Chloé Chong, Markus Müller, Hui-Song Pak, Dermot Harnett +22 more
2019Nature Communications299 citations Open access
Semantic Scholar
Robust prediction of HLA class II epitopes by deep motif deconvolution of immunopeptidomes
Julien Racle, Justine Michaux, Georg Alexander Rockinger, M. Arnaud +8 more
2019Nature Biotechnology259 citations Open access
Semantic Scholar
The Length Distribution and Multiple Specificity of Naturally Presented HLA-I Ligands
D. Gfeller, P. Guillaume, Justine Michaux, Hui-Song Pak +4 more
2018Journal of Immunology162 citations Open access
Semantic Scholar
Immunopeptidomics of colorectal cancer organoids reveals a sparse HLA class I neoantigen landscape and no increase in neoantigens with interferon or MEK-inhibitor treatment
Alice Newey, Beatrice Griffiths, Justine Michaux, Song-Pak Hui +16 more
2019Journal of Immunotherapy for Cancer131 citations Open access
Semantic Scholar
Tryptophan depletion results in tryptophan-to-phenylalanine substitutants
Abhijeet Pataskar, Julien Champagne, Remco Nagel, J. Kenski +20 more
2022Nature129 citations Open access
Semantic Scholar
A comprehensive proteogenomic pipeline for neoantigen discovery to advance personalized cancer immunotherapy
Florian Huber, M. Arnaud, Brian J. Stevenson, Justine Michaux +25 more
2024Nature Biotechnology128 citations Open access
Semantic Scholar
Machine learning predictions of MHC-II specificities reveal alternative binding mode of class II epitopes
Julien Racle, P. Guillaume, J. Schmidt, Justine Michaux +11 more
2022bioRxiv116 citations Open access
Semantic Scholar
Cathepsin S Regulates Antigen Processing and T Cell Activity in Non-Hodgkin Lymphoma.
E. Dheilly, E. Battistello, Natalya Katanayeva, Stephanie Sungalee +17 more
2020Cancer Cell99 citations Open access
Semantic Scholar
Machine learning methods and harmonized datasets improve immunogenic neoantigen prediction.
Markus Müller, Florian Huber, M. Arnaud, Anne I. Kraemer +11 more
2023Immunity95 citations Open access
Semantic Scholar
The immunopeptidome landscape associated with T cell infiltration, inflammation and immune editing in lung cancer
Anne I. Kraemer, Chloé Chong, Florian Huber, Hui-Song Pak +13 more
2023Nature Cancer87 citations Open access
Semantic Scholar
Restoring Tumor Immunogenicity with Dendritic Cell Reprogramming
Olga Zimmermannova, A. G. Ferreira, Ervin Ascic, M. Santiago +25 more
2023Science immunology82 citations Open access
Semantic Scholar
Sensitive Immunopeptidomics by Leveraging Available Large-Scale Multi-HLA Spectral Libraries, Data-Independent Acquisition, and MS/MS Prediction
Hui-Song Pak, Justine Michaux, Florian Huber, Chloé Chong +4 more
2021Molecular & Cellular Proteomics75 citations Open access
Semantic Scholar
A Phase Ib Study of the Combination of Personalized Autologous Dendritic Cell Vaccine, Aspirin, and Standard of Care Adjuvant Chemotherapy Followed by Nivolumab for Resected Pancreatic Adenocarcinoma—A Proof of Antigen Discovery Feasibility in Three Patients
M. Bassani-Sternberg, A. Digklia, Florian Huber, D. Wagner +14 more
2019Frontiers in Immunology72 citations Open access
Semantic Scholar
Mass spectrometry–driven exploration reveals nuances of neoepitope-driven tumor rejection
H. Ebrahimi-Nik, Justine Michaux, William L. Corwin, G. Keller +7 more
2019JCI Insight65 citations Open access
Semantic Scholar
Mass Spectrometry Based Immunopeptidomics Leads to Robust Predictions of Phosphorylated HLA Class I Ligands*
M. Solleder, P. Guillaume, Julien Racle, Justine Michaux +5 more
2019Molecular & Cellular Proteomics60 citations Open access
Semantic Scholar
Immunopeptidomics-based identification of naturally presented non-canonical circRNA-derived peptides
Humberto J. Ferreira, Brian J. Stevenson, Hui-Song Pak, Feng-Chao Yu +11 more
2024Nature Communications52 citations Open access
Semantic Scholar
Bedside formulation of a personalized multi-neoantigen vaccine against mammary carcinoma
M. Mohsen, D. Speiser, Justine Michaux, Hui-Song Pak +8 more
2021Journal for ImmunoTherapy of Cancer35 citations Open access
Semantic Scholar
CIITA-Transduced Glioblastoma Cells Uncover a Rich Repertoire of Clinically Relevant Tumor-Associated HLA-II Antigens
G. Forlani, Justine Michaux, Hui-Song Pak, Florian Huber +6 more
2020Molecular & Cellular Proteomics32 citations Open access
Semantic Scholar
Reversion analysis reveals the in vivo immunogenicity of a poorly MHC I-binding cancer neoepitope
H. Ebrahimi-Nik, Marmar Moussa, Ryan P. Englander, Summit Singhaviranon +12 more
2021Nature Communications31 citations Open access
Semantic Scholar
High-Throughput, Fast, and Sensitive Immunopeptidomics Sample Processing for Mass Spectrometry.
F. Marino, Chloé Chong, Justine Michaux, M. Bassani-Sternberg
2019Methods in molecular biology30 citations
Semantic Scholar
A microfluidics-enabled automated workflow of sample preparation for MS-based immunopeptidomics
Xiaokang Li, Hui-Song Pak, Florian Huber, Justine Michaux +3 more
2023Cell Reports Methods26 citations Open access
Semantic Scholar
Rapid tumor vaccine using Toll-like receptor-activated ovarian cancer ascites monocytes
S. Adams, Alizée J. Grimm, C. Chiang, Ananda Mookerjee +14 more
2020Journal for ImmunoTherapy of Cancer25 citations Open access
Semantic Scholar
HIV vaccines induce CD8+ T cells with low antigen receptor sensitivity
S. Migueles, Danielle M. Nettere, Noah V. Gavil, Lawrence T. Wang +37 more
2023Science23 citations
Semantic Scholar
Phage display enables machine learning discovery of cancer antigen–specific TCRs
G. Croce, Rachid Lani, Delphine Tardivon, S. Bobisse +16 more
2024bioRxiv22 citations
Semantic Scholar
A Cluster of Evolutionarily Recent KRAB Zinc Finger Proteins Protects Cancer Cells from Replicative Stress–Induced Inflammation
Filipe Martins, Olga Rosspopoff, Joana Carlevaro-Fita, Romain Forey +9 more
2024Cancer Research21 citations Open access
Semantic Scholar
Sensitive neoantigen discovery by real-time mutanome-guided immunopeptidomics
I. E. Shapiro, Florian Huber, Justine Michaux, M. Bassani-Sternberg
2025Nature Communications18 citations Open access
Semantic Scholar
Biogenesis of HLA Ligand Presentation in Immune Cells Upon Activation Reveals Changes in Peptide Length Preference
F. Marino, Aikaterini Semilietof, Justine Michaux, Hui-Song Pak +3 more
2020Frontiers in Immunology18 citations Open access
Semantic Scholar
TCR-Engineered T Cells Directed against Ropporin-1 Constitute a Safe and Effective Treatment for Triple-Negative Breast Cancer
Dian Kortleve, Dora Hammerl, M. van Brakel, R. Wijers +17 more
2024bioRxiv13 citations Open access
Semantic Scholar
Deleterious KOs in the HLA Class I Antigen Processing and Presentation Machinery Induce Distinct Changes in the Immunopeptidome
I. E. Shapiro, Clélia Maschke, Justine Michaux, Hui-Song Pak +4 more
2025Molecular & Cellular Proteomics10 citations Open access
Semantic Scholar
Deep motif deconvolution of HLA-II peptidomes for robust class II epitope predictions
Julien Racle, Justine Michaux, Georg Alexander Rockinger, M. Arnaud +8 more
2019bioRxiv9 citations Open access
Semantic Scholar
Author Correction: Tryptophan depletion results in tryptophan-to-phenylalanine substitutants
Abhijeet Pataskar, Julien Champagne, Remco Nagel, J. Kenski +20 more
2022Nature2 citations Open access
Semantic Scholar
Circulating tumor‐associated and neoantigen‐specific endogenous T cells in children treated for B‐acute lymphoblastic leukemia
Eliane Huwiler, Anne-Christine Thierry, Justine Michaux, Hui-Song Pak +5 more
2025HemaSphere1 citations Open access
Semantic Scholar
Personalized neoantigen vaccine platform and longitudinal tracking of vaccine-related clonotypes enable the identification of tumor-specific TCRs
Laurent Beziaud, P. Szturz, A. Sarivalasis, Florian Huber +19 more
2026Cancer Immunology and Immunotherapy0 citations Open access
Semantic Scholar
361 T cell receptor specific for tumor-restricted Ropporin-1 to treat triple negative breast cancer
Dora Hammerl, Dian Kortleve, M. van Brakel, R. Wijers +12 more
2023Regular and Young Investigator Award Abstracts0 citations Open access
Semantic Scholar
Enzymatic processing and MHC loading in cancer immunotherapyAdvanced immunopeptidomics based discovery engine for the development of personalized cancer immunotherapy
M. Bassani-Sternberg, Markus Müller, Florian Huber, Brian Stevenson +4 more
2022Molecular Immunology0 citations
Semantic Scholar
CRISPR-guided reversion reveals the immunogenicity of a “non-MHC binding” cancer neoepitope in vivo
H. Ebrahimi-Nik, Marmar Moussa, Ryan P. Englander, Summit Singhaviranon +12 more
20200 citations Open access
Semantic Scholar
Mass spectroscopy-defined neoepitopes are a rich source of tumor rejection-mediating neoepitopes in a mouse sarcoma
H. Ebrahimi-Nik, T. Shcheglova, Justine Michaux, Hui-Song Pak +5 more
2019Journal of Immunology0 citations
Semantic Scholar

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M. Bassani-Sternberg×37
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M. Bassani-Sternberg — researcher profile on SciRah
Hui-Song Pak×24
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Hui-Song Pak — researcher profile on SciRah
G. Coukos×18
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Florian Huber×15
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Julien Racle — researcher profile on SciRah

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D. Gfeller — researcher profile on SciRah

Chloé Chong×7

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Brian J. Stevenson×7

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Brian J. Stevenson — researcher profile on SciRah

Marie Taillandier-Coindard×6

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M. Arnaud — researcher profile on SciRah

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