Skip to content

Home Search Authors Pakistan News Saved

SciRah

SciRah does not host or store research papers. Results come live from free, official scholarly APIs, and every paper links back to its original source.

Data sources

OpenAlex
Semantic Scholar
Crossref
CORE
arXiv
PubMed

Privacy policy Terms of service

J. DiRuggiero · SciRah

Researcher profile · Semantic Scholar

J. DiRuggiero

Share profile

J. DiRuggiero — researcher profile on SciRah

h-index: 38
Works: 102
Citations: 6,817

Most-cited papers

MetaWRAP—a flexible pipeline for genome-resolved metagenomic data analysis
G. Uritskiy, J. DiRuggiero, James Taylor
2018Microbiome2,356 citations Open access
Semantic Scholar
A predictive model for transcriptional control of physiology in a free living cell.
Richard Bonneau, M. Facciotti, David J. Reiss, Amy K. Schmid +17 more
2007Cell313 citations Open access
Semantic Scholar
Genomic sequence of hyperthermophile, Pyrococcus furiosus: implications for physiology and enzymology.
Frank T. Robb, D. Maeder, James R. Brown, J. DiRuggiero +4 more
2001Methods in Enzymology237 citations
Semantic Scholar
Colonization patterns of soil microbial communities in the Atacama Desert
A. Crits-Christoph, C. Robinson, T. Barnum, W. Fricke +4 more
2013Microbiome227 citations Open access
Semantic Scholar
Transitory microbial habitat in the hyperarid Atacama Desert
D. Schulze-Makuch, D. Wagner, S. Kounaves, K. Mangelsdorf +41 more
2018Proceedings of the National Academy of Sciences of the United States of America221 citations Open access
Semantic Scholar
Physiological responses of the halophilic archaeon Halobacterium sp. strain NRC1 to desiccation and gamma irradiation
Molly C. Kottemann, A. Kish, Chika Iloanusi, S. Bjork +1 more
2005Extremophiles214 citations Open access
Semantic Scholar
Nearing the cold-arid limits of microbial life in permafrost of an upper dry valley, Antarctica
J. Goordial, A. Davila, D. Lacelle, W. Pollard +5 more
2016The ISME Journal164 citations Open access
Semantic Scholar
Systems level insights into the stress response to UV radiation in the halophilic archaeon Halobacterium NRC-1.
N. Baliga, S. Bjork, Richard Bonneau, Min Pan +4 more
2004Genome Research150 citations Open access
Semantic Scholar
Archaeal Binding Protein-Dependent ABC Transporter: Molecular and Biochemical Analysis of the Trehalose/Maltose Transport System of the Hyperthermophilic Archaeon Thermococcus litoralis
R. Horlacher, K. Xavier, Helena Santos, J. DiRuggiero +2 more
1998Journal of Bacteriology141 citations Open access
Semantic Scholar
Divergence of the hyperthermophilic archaea Pyrococcus furiosus and P. horikoshii inferred from complete genomic sequences.
D. Maeder, Robert B. Weiss, D. Dunn, Joshua L. Cherry +3 more
1999Genetics139 citations
Semantic Scholar
Adaptation strategies of endolithic chlorophototrophs to survive the hyperarid and extreme solar radiation environment of the Atacama Desert
J. Wierzchos, J. DiRuggiero, P. Vítek, O. Artieda +7 more
2015Frontiers in Microbiology119 citations Open access
Semantic Scholar
Evidence of recent lateral gene transfer among hyperthermophilic Archaea
J. DiRuggiero, D. Dunn, D. Maeder, R. Holley-Shanks +5 more
2000Molecular Microbiology119 citations Open access
Semantic Scholar
Both RadA and RadB Are Involved in Homologous Recombination inPyrococcus furiosus *
K. Komori, T. Miyata, J. DiRuggiero, R. Holley-Shanks +5 more
2000Journal of Biological Chemistry115 citations Open access
Semantic Scholar
Microbial diversity and the presence of algae in halite endolithic communities are correlated to atmospheric moisture in the hyper-arid zone of the Atacama Desert.
C. Robinson, J. Wierzchos, C. Black, A. Crits-Christoph +8 more
2015Environmental Microbiology109 citations Open access
Semantic Scholar
Functional interactions of archaea, bacteria and viruses in a hypersaline endolithic community.
A. Crits-Christoph, Diego R. Gelsinger, B. Ma, J. Wierzchos +4 more
2016Environmental Microbiology103 citations Open access
Semantic Scholar
Across the tree of life, radiation resistance is governed by antioxidant Mn2+, gauged by paramagnetic resonance
Ajay Sharma, E. K. Gaidamakova, O. Grichenko, V. Matrosova +12 more
2017Proceedings of the National Academy of Sciences of the United States of America99 citations Open access
Semantic Scholar
A Major Role for Nonenzymatic Antioxidant Processes in the Radioresistance of Halobacterium salinarum
C. Robinson, K. Webb, Amardeep Kaur, P. Jaruga +4 more
2011Journal of Bacteriology83 citations Open access
Semantic Scholar
Fundamental drivers for endolithic microbial community assemblies in the hyperarid Atacama Desert
Victoria Meslier, M. Casero, Micah Dailey, J. Wierzchos +4 more
2018Environmental Microbiology81 citations Open access
Semantic Scholar
Microbial survival of space vacuum and extreme ultraviolet irradiation: strain isolation and analysis during a rocket flight.
R. Saffary, R. Nandakumar, D. Spencer, F. Robb +5 more
2002FEMS Microbiology Letters80 citations
Semantic Scholar
Salt shield: intracellular salts provide cellular protection against ionizing radiation in the halophilic archaeon, Halobacterium salinarum NRC-1.
A. Kish, G. Kirkali, C. Robinson, R. Rosenblatt +3 more
2009Environmental Microbiology76 citations
Semantic Scholar
Molecular and Biochemical Analysis of MalK, the ATP-hydrolyzing Subunit of the Trehalose/Maltose Transport System of the Hyperthermophilic Archaeon Thermococcus litoralis *
G. Greller, R. Horlacher, J. DiRuggiero, W. Boos
1999Journal of Biological Chemistry75 citations Open access
Semantic Scholar
Microbial colonisation of chasmoendolithic habitats in the hyper-arid zone of the Atacama Desert
J. DiRuggiero, J. Wierzchos, C. Robinson, T. Souterre +4 more
201274 citations Open access
Semantic Scholar
Ribosome profiling in archaea reveals leaderless translation, novel translational initiation sites, and ribosome pausing at single codon resolution
D. Gelsinger, Emma Dallon, R. Reddy, Fuad Mohammad +2 more
2020bioRxiv73 citations Open access
Semantic Scholar
DNA Repair Systems in Archaea: Mementos from the Last Universal Common Ancestor?
J. DiRuggiero, James R. Brown, Allison P. Bogert, F. Robb
1999Journal of Molecular Evolution71 citations
Semantic Scholar
Role of Mn2+ and Compatible Solutes in the Radiation Resistance of Thermophilic Bacteria and Archaea
K. Webb, J. DiRuggiero
2012Archaea70 citations Open access
Semantic Scholar
Mechanism of water extraction from gypsum rock by desert colonizing microorganisms
Wei Huang, Emine Ertekin, Tai-Kang Wang, Luz Cruz +3 more
2020Proceedings of the National Academy of Sciences of the United States of America69 citations Open access
Semantic Scholar
Halophilic microbial community compositional shift after a rare rainfall in the Atacama Desert
G. Uritskiy, Samantha Getsin, A. Munn, B. Gómez-Silva +4 more
2019The ISME Journal65 citations Open access
Semantic Scholar
Comparative activity and functional ecology of permafrost soils and lithic niches in a hyper‐arid polar desert
J. Goordial, A. Davila, C. Greer, Rebecca Cannam +3 more
2017Environmental Microbiology64 citations
Semantic Scholar
Coordination of frontline defense mechanisms under severe oxidative stress
Amardeep Kaur, Phu Van, C. Busch, C. Robinson +5 more
2010Molecular Systems Biology59 citations Open access
Semantic Scholar
Phylogenetic and Functional Substrate Specificity for Endolithic Microbial Communities in Hyper-Arid Environments
A. Crits-Christoph, C. Robinson, B. Ma, J. Ravel +6 more
2015bioRxiv58 citations Open access
Semantic Scholar
Microarray analysis of the hyperthermophilic archaeon Pyrococcus furiosus exposed to gamma irradiation
E. Williams, T. Lowe, Jeffrey N. Savas, J. DiRuggiero
2006Extremophiles58 citations Open access
Semantic Scholar
Expression and in vitro assembly of recombinant glutamate dehydrogenase from the hyperthermophilic archaeon Pyrococcus furiosus
J. DiRuggiero, Frank T. Robb
1995Applied and Environmental Microbiology54 citations Open access
Semantic Scholar
Transcriptional Landscape and Regulatory Roles of Small Noncoding RNAs in the Oxidative Stress Response of the Haloarchaeon Haloferax volcanii
D. Gelsinger, J. DiRuggiero
2017bioRxiv46 citations Open access
Semantic Scholar
Effects of intracellular Mn on the radiation resistance of the halophilic archaeon Halobacterium salinarum
K. Webb, Je-Kwan Yu, C. Robinson, Tomiya Noboru +2 more
2013Extremophiles46 citations
Semantic Scholar
Evidence for genetic drift in the diversification of a geographically isolated population of the hyperthermophilic archaeon Pyrococcus.
P. Escobar-Páramo, Sulagna Dia Ghosh, J. DiRuggiero
2005Molecular biology and evolution44 citations Open access
Semantic Scholar
In situ metabolism in halite endolithic microbial communities of the hyperarid Atacama Desert
A. Davila, I. Hawes, J. Araya, D. Gelsinger +4 more
2015Frontiers in Microbiology43 citations Open access
Semantic Scholar
Microarray analysis of the hyperthermophilic archaeon Pyrococcus furiosus exposed to gamma irradiation
E. Williams, T. Lowe, Jeffrey N. Savas, J. DiRuggiero
2006Extremophiles40 citations
Semantic Scholar
The Non-Coding Regulatory RNA Revolution in Archaea
D. Gelsinger, J. DiRuggiero
2018Genes39 citations Open access
Semantic Scholar
MutS and MutL Are Dispensable for Maintenance of the Genomic Mutation Rate in the Halophilic Archaeon Halobacterium salinarum NRC-1
C. Busch, J. DiRuggiero
2010PLoS ONE38 citations Open access
Semantic Scholar
Characterization of Plasmid pRT1 from Pyrococcus sp. Strain JT1
D. Ward, I. Revet, R. Nandakumar, J. H. Tuttle +3 more
2002Journal of Bacteriology35 citations Open access
Semantic Scholar
SnapShot: Microbial Extremophiles.
Amy K. Schmid, T. Allers, J. DiRuggiero
2020Cell33 citations Open access
Semantic Scholar
Cloning and Sequence Analysis of the Mercury Resistance Operon of Streptomyces sp. Strain CHR28 Reveals a Novel Putative Second Regulatory Gene
J. Ravel, J. DiRuggiero, F. Robb, R. Hill
2000Journal of Bacteriology33 citations Open access
Semantic Scholar
Trophic Selective Pressures Organize the Composition of Endolithic Microbial Communities From Global Deserts
Evan B. Qu, C. Omelon, A. Oren, Victoria Meslier +3 more
2019bioRxiv32 citations Open access
Semantic Scholar
Extensive Genome Rearrangements and Multiple Horizontal Gene Transfers in a Population of Pyrococcus Isolates from Vulcano Island, Italy
J. White, P. Escobar-Páramo, E. Mongodin, K. Nelson +1 more
2008Applied and Environmental Microbiology32 citations Open access
Semantic Scholar
Endolithic microbial communities as model systems for ecology and astrobiology
Victoria Meslier, J. DiRuggiero
2019Model Ecosystems in Extreme Environments30 citations
Semantic Scholar
Cellular life from the three domains and viruses are transcriptionally active in a hypersaline desert community
G. Uritskiy, M. Tisza, D. Gelsinger, A. Munn +2 more
2019bioRxiv30 citations Open access
Semantic Scholar
Rock structure drives the taxonomic and functional diversity of endolithic microbial communities in extreme environments.
Emine Ertekin, Victoria Meslier, A. Browning, John Treadgold +1 more
2020Environmental Microbiology28 citations
Semantic Scholar
Applying Genome-Resolved Metagenomics to Deconvolute the Halophilic Microbiome
G. Uritskiy, J. DiRuggiero
2019Genes27 citations Open access
Semantic Scholar
A proposal to rename the hyperthermophile Pyrococcus woesei as Pyrococcus furiosus subsp. woesei.
W. Kanoksilapatham, J. Gonzalez, D. Maeder, J. DiRuggiero +1 more
2004Archaea27 citations Open access
Semantic Scholar
A Survey of the Genome of the Hyperthermophilic Archaeon, Pyrococcus furiosus
K. Borges, S. Brummet, Allison P. Bogert, Maria C. Davis +8 more
199622 citations
Semantic Scholar

Frequent co-authors

Invite them to SciRah by sharing their profile.

C. Robinson×8
Invite
C. Robinson — researcher profile on SciRah
A. Davila×8
Invite
A. Davila — researcher profile on SciRah
J. Wierzchos×7
Invite
J. Wierzchos — researcher profile on SciRah
F. Robb×6
Invite
F. Robb — researcher profile on SciRah

×6

Invite

C. Ascaso — researcher profile on SciRah

Invite

J. Ravel — researcher profile on SciRah

Invite

O. Artieda — researcher profile on SciRah

D. Gelsinger×5

Invite

D. Gelsinger — researcher profile on SciRah

Invite

G. Uritskiy — researcher profile on SciRah

Invite

N. Baliga — researcher profile on SciRah

Invite

D. Maeder — researcher profile on SciRah

A. Crits-Christoph×4

Invite

A. Crits-Christoph — researcher profile on SciRah