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P. Varilly · SciRah

Researcher profile · Semantic Scholar

P. Varilly

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P. Varilly — researcher profile on SciRah

h-index: 22
Works: 47
Citations: 15K

Most-cited papers

A haplotype map of the human genome
J. Belmont, A. Boudreau, S. Leal, P. Hardenbol +229 more
2003Nature5,014 citations Open access
Semantic Scholar
A second generation human haplotype map of over 3.1 million SNPs
K. Frazer, D. Ballinger, D. Cox, D. Hinds +233 more
2007Nature4,713 citations Open access
Semantic Scholar
Genome-wide detection and characterization of positive selection in human populations
Pardis C Sabeti, P. Varilly, B. Fry, J. Lohmueller +8 more
2007Nature2,072 citations Open access
Semantic Scholar
Positive Natural Selection in the Human Lineage
Pardis C Sabeti, S. Schaffner, B. Fry, J. Lohmueller +6 more
2006Science1,138 citations
Semantic Scholar
Fluctuations of water near extended hydrophobic and hydrophilic surfaces
Amish J. Patel, P. Varilly, D. Chandler
2009Journal of Physical Chemistry B273 citations Open access
Semantic Scholar
The Case for Selection at CCR5-Δ32
Pardis C Sabeti, E. Walsh, S. Schaffner, P. Varilly +11 more
2005PLoS Biology205 citations Open access
Semantic Scholar
Sitting at the Edge: How Biomolecules use Hydrophobicity to Tune their Interactions and Function
Amish J. Patel, P. Varilly, Sumanth N. Jamadagni, M. Hagan +2 more
2011Journal of Physical Chemistry B201 citations Open access
Semantic Scholar
Extended surfaces modulate hydrophobic interactions of neighboring solutes
Amish J. Patel, P. Varilly, Sumanth N. Jamadagni, Hari Acharya +2 more
2011Proceedings of the National Academy of Sciences of the United States of America134 citations Open access
Semantic Scholar
Water evaporation: a transition path sampling study.
P. Varilly, D. Chandler
2012Journal of Physical Chemistry B129 citations Open access
Semantic Scholar
Quantifying density fluctuations in volumes of all shapes and sizes using indirect umbrella sampling
Amish J. Patel, P. Varilly, D. Chandler, S. Garde
2011Journal of statistical physics116 citations Open access
Semantic Scholar
Positive Natural Selection in the Human
Pardis C Sabeti, S. Schaffner, B. Fry, J. Lohmueller +6 more
2006115 citations
Semantic Scholar
A general theory of DNA-mediated and other valence-limited colloidal interactions.
P. Varilly, S. Angioletti-Uberti, B. Mognetti, D. Frenkel
2012Journal of Chemical Physics112 citations Open access
Semantic Scholar
An improved coarse-grained model of solvation and the hydrophobic effect.
P. Varilly, Amish J. Patel, D. Chandler
2010Journal of Chemical Physics85 citations Open access
Semantic Scholar
Searching for signals of evolutionary selection in 168 genes related to immune function
E. Walsh, Pardis C Sabeti, H. Hutcheson, B. Fry +12 more
2006Human Genetics80 citations
Semantic Scholar
Mobile linkers on DNA-coated colloids: valency without patches.
S. Angioletti-Uberti, P. Varilly, B. Mognetti, D. Frenkel
2014Physical Review Letters72 citations Open access
Semantic Scholar
Transcendental obstructions to weak approximation on general K3 surfaces
B. Hassett, Anthony Várilly-Alvarado, P. Varilly
201067 citations Open access
Semantic Scholar
Communication: a simple analytical formula for the free energy of ligand-receptor-mediated interactions.
S. Angioletti-Uberti, P. Varilly, B. Mognetti, A. Tkachenko +1 more
2012Journal of Chemical Physics59 citations Open access
Semantic Scholar
Effect of inert tails on the thermodynamics of DNA hybridization.
L. Di Michele, B. Mognetti, T. Yanagishima, P. Varilly +3 more
2014Journal of the American Chemical Society46 citations
Semantic Scholar
Consistent Treatment of Hydrophobicity in Protein Lattice Models Accounts for Cold Denaturation.
E. van Dijk, P. Varilly, T. Knowles, D. Frenkel +1 more
2015Physical Review Letters37 citations Open access
Semantic Scholar
Predicting DNA-mediated colloidal pair interactions
B. Mognetti, P. Varilly, S. Angioletti-Uberti, Francisco J. Martinez-Veracoechea +3 more
2012Proceedings of the National Academy of Sciences of the United States of America30 citations Open access
Semantic Scholar
Genomic data reveals zoonotic and sustained human Mpox spread in West Africa
E. Parker, I. Omah, D. D. Djuicy, Andrew Magee +58 more
2025Nature26 citations Open access
Semantic Scholar
Extended surfaces modulate and can catalyze hydrophobic effects
Amish J. Patel, P. Varilly, Sumanth N. Jamadagni, Hari Acharya +2 more
201122 citations Open access
Semantic Scholar
Lectures on Molecular- and Nano-scale Fluctuations in Water
D. Chandler, P. Varilly
201117 citations
Semantic Scholar
Spatial diquark correlations in a hadron
J. Green, J. Negele, M. Engelhardt, P. Varilly
201015 citations Open access
Semantic Scholar
Designing stimulus-sensitive colloidal walkers.
Francisco J. Martinez-Veracoechea, B. Mognetti, S. Angioletti-Uberti, P. Varilly +2 more
2014Soft Matter14 citations Open access
Semantic Scholar
The Case for Selection at CCR 5D 32
Pardis C Sabeti, E. Walsh, S. Schaffner, P. Varilly +11 more
200514 citations
Semantic Scholar
Genomic epidemiology of the 2025 mpox epidemic in Sierra Leone
A. Campbell, J. D. Sandi, I. Omah, M. Faye +85 more
2026Nature Medicine11 citations Open access
Semantic Scholar
Molecular epidemiology of recurrent zoonotic transmission of mpox virus in West Africa
D. D. Djuicy, I. Omah, E. Parker, C. Tomkins-Tinch +57 more
2024medRxiv10 citations Open access
Semantic Scholar
A haplotype map of the human genome The International HapMap Consortium
J. Belmont, A. Boudreau, S. Leal, P. Hardenbol +120 more
200510 citations
Semantic Scholar
Delphy: scalable, near-real-time Bayesian phylogenetics for outbreaks
P. Varilly, Mark Schifferli, Katherine Yang, T. Burcham +21 more
2025bioRxiv8 citations Open access
Semantic Scholar
Genomic epidemiology uncovers the timing and origin of the emergence of mpox in humans
E. Parker, I. Omah, P. Varilly, Andrew Magee +44 more
2024medRxiv8 citations Open access
Semantic Scholar
Deterministic access to global viral sequence data enables robust agentic scientific discovery
Ferdous Nasri, Sarah Gurev, P. Varilly, Krithik Ramesh +5 more
20267 citations
Semantic Scholar
JUNIPER: Reconstructing Transmission Events from Next-Generation Sequencing Data at Scale
I. Specht, G. Moreno, T. Brock-Fisher, L. Krasilnikova +14 more
2025medRxiv7 citations Open access
Semantic Scholar
Genomic epidemiology uncovers the origin of the mpox epidemic in Sierra Leone
A. Campbell, J. D. Sandi, I. Omah, M. Faye +40 more
2025medRxiv4 citations Open access
Semantic Scholar
Fluctuations in Water and their Relation to the Hydrophobic Effect
P. Varilly
20114 citations
Semantic Scholar
Diquark correlations in a hadron from lattice QCD
J. Green, M. Engelhardt, J. Negele, P. Varilly
20123 citations Open access
Semantic Scholar
Inferring Viral Transmission Pathways from Within-Host Variation
I. Specht, B. Petros, G. Moreno, T. Brock-Fisher +13 more
2023medRxiv1 citations Open access
Semantic Scholar
Intra-chain organisation of hydrophobic residues controls inter-chain aggregation rates of amphiphilic polymers.
P. Varilly, Adam P. Willard, J. B. Kirkegaard, T. Knowles +1 more
2016Journal of Chemical Physics1 citations Open access
Semantic Scholar
Supplementary Text for: Inferring Viral Transmission Pathways from Within-Host Variation
I. Specht, B. Petros, G. Moreno, T. Brock-Fisher +13 more
1 citations
Semantic Scholar
Scalable near-real-time Bayesian phylogenetics for outbreaks with Delphy
P. Varilly, Mark Schifferli, Katherine Yang, P. Cronan +23 more
2026Nature0 citations Open access
Semantic Scholar
JUNIPER: Reconstructing Transmission Events from Next-Generation Sequencing Data at Scale
I. Specht, G. Moreno, T. Brock-Fisher, L. Krasilnikova +14 more
2025Research Square0 citations Open access
Semantic Scholar
Sabeti Positive Natural Selection in the Human Lineage
Pardis C Sabeti, S. Schaffner, B. Fry, J. Lohmueller +6 more
20120 citations
Semantic Scholar
Exploring the dewetting transition in the hydrophobic collapse of melittin
P. Varilly, Amish J. Patel, D. Chandler
20110 citations
Semantic Scholar
Hydrophobic effects in interfacial environments
Amish J. Patel, P. Varilly, Sumanth N. Jamadagni, Hari Acharya +2 more
20110 citations
Semantic Scholar
An Improved Lattice Gas Model of the Hydrophobic Effect
P. Varilly, Amish J. Patel, D. Chandler
20100 citations
Semantic Scholar
Exploration of the role of diquarks in hadrons using lattice QCD
P. Varilly
20060 citations
Semantic Scholar
The Case for Selection at CCR5-Δ32 The Harvard community has made this article openly available. Please share how this access benefits you. Your story matters
Pardis C Sabeti, E. Walsh, S. Schaffner, P. Varilly +11 more
20050 citations
Semantic Scholar

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