D. Frenkel

Most-cited papers

Liquid network connectivity regulates the stability and composition of biomolecular condensates with many components
J. R. Espinosa, Jerelle A. Joseph, I. Sanchez-Burgos, A. Garaizar +2 more
2020Proceedings of the National Academy of Sciences of the United States of America227 citations Open access
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The Lennard-Jones potential: when (not) to use it.
Xi-Peng Wang, Simón Ramírez-Hinestrosa, J. Dobnikar, D. Frenkel
2019Physical Chemistry, Chemical Physics - PCCP212 citations Open access
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Phase Transitions in Biological Systems with Many Components.
William M. Jacobs, D. Frenkel
2017Biophysical Journal168 citations Open access
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The crucial effect of early-stage gelation on the mechanical properties of cement hydrates
K. Ioannidou, M. Kanduč, Lun-Na Li, D. Frenkel +2 more
2016Nature Communications151 citations Open access
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Light-induced actuating nanotransducers
T. Ding, V. Valev, Andrew R. Salmon, C. Forman +4 more
2016Proceedings of the National Academy of Sciences of the United States of America142 citations Open access
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Computational methodology for solubility prediction: Application to the sparingly soluble solutes.
Lun-Na Li, T. Totton, D. Frenkel
2017Journal of Chemical Physics106 citations Open access
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Optimal multivalent targeting of membranes with many distinct receptors
T. Curk, J. Dobnikar, D. Frenkel
2017Proceedings of the National Academy of Sciences of the United States of America88 citations Open access
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Thermodynamics and kinetics of phase separation of protein-RNA mixtures by a minimal model.
Jerelle A. Joseph, J. R. Espinosa, I. Sanchez-Burgos, A. Garaizar +2 more
2021Biophysical Journal82 citations Open access
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Self-Assembly of Structures with Addressable Complexity.
William M. Jacobs, D. Frenkel
2016Journal of the American Chemical Society81 citations Open access
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Kinetics of spontaneous filament nucleation via oligomers: Insights from theory and simulation.
A. Šarić, T. Michaels, A. Zaccone, T. Knowles +1 more
2016Journal of Chemical Physics81 citations Open access
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Molecular Simulation of Thermo-osmotic Slip.
Raman S. Ganti, Yawei Liu, D. Frenkel
2017Physical Review Letters66 citations Open access
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Multivalent Recognition at Fluid Surfaces: The Interplay of Receptor Clustering and Superselectivity.
G. V. Dubacheva, T. Curk, D. Frenkel, R. Richter
2019Journal of the American Chemical Society53 citations Open access
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A unified description of colloidal thermophoresis
J. Burelbach, D. Frenkel, I. Pagonabarraga, E. Eiser
2017The European Physical Journal E : Soft matter53 citations Open access
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Quantifying Co-Oligomer Formation by α-Synuclein
Marija Iljina, A. Dear, Gonzalo A. Garcia, S. De +8 more
2018ACS Nano48 citations Open access
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Rational design of molecularly imprinted polymers.
T. Curk, J. Dobnikar, D. Frenkel
2016Soft Matter45 citations Open access
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Design Principles for Super Selectivity using Multivalent Interactions
T. Curk, J. Dobnikar, D. Frenkel
201641 citations Open access
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Breakdown of the law of rectilinear diameter and related surprises in the liquid-vapor coexistence in systems of patchy particles
J. R. Espinosa, A. Garaizar, C. Vega, D. Frenkel +1 more
2019Journal of Chemical Physics40 citations Open access
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Temperature protocols to guide selective self-assembly of competing structures
Arunkumar Bupathy, D. Frenkel, S. Sastry
2021Proceedings of the National Academy of Sciences of the United States of America37 citations Open access
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From simple liquids to colloids and soft matter
R. Evans, D. Frenkel, M. Dijkstra
2019Physics today36 citations Open access
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Heterogeneous versus homogeneous crystal nucleation of hard spheres.
J. R. Espinosa, C. Vega, C. Valeriani, D. Frenkel +1 more
2019Soft Matter35 citations Open access
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Computational methodology for solubility prediction: Application to sparingly soluble organic/inorganic materials.
Lun-Na Li, T. Totton, D. Frenkel
2018Journal of Chemical Physics32 citations Open access
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Controlling Cargo Trafficking in Multicomponent Membranes.
T. Curk, Peter Wirnsberger, J. Dobnikar, D. Frenkel +1 more
2017Nano letters (Print)29 citations Open access
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DNA brick self-assembly with an off-lattice potential.
Aleks Reinhardt, D. Frenkel
2016Soft Matter29 citations Open access
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Simulations of DNA-Origami Self-Assembly Reveal Design-Dependent Nucleation Barriers
A. Cumberworth, D. Frenkel, Aleks Reinhardt
2022Nano letters (Print)25 citations Open access
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Hamiltonian Transformation to Compute Thermo-osmotic Forces.
Raman S. Ganti, Yawei Liu, D. Frenkel
2017Physical Review Letters23 citations Open access
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UvA-DARE ( Digital Academic Repository ) Breakdown of classical nucleation theory near isostructural phase transitions
S. Auer, D. Frenkel
201722 citations
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When droplets become stars: charged dielectric droplets beyond the Rayleigh limit.
M. Oh, A. Malevanets, M. Paliy, D. Frenkel +1 more
2017Soft Matter21 citations Open access
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A review of immune amplification via ligand clustering by self-assembled liquid–crystalline DNA complexes
Ernest Y Lee, Calvin K. Lee, N. Schmidt, Fan Jin +6 more
2016Advances in Colloid and Interface Science21 citations Open access
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Monte Carlo sampling for stochastic weight functions
D. Frenkel, K. J. Schrenk, Stefano Martiniani
2016Proceedings of the National Academy of Sciences of the United States of America21 citations Open access
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Computing the Heat Conductivity of Fluids from Density Fluctuations.
Bingqing Cheng, D. Frenkel
2020Physical Review Letters20 citations Open access
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Computational design of probes to detect bacterial genomes by multivalent binding
T. Curk, C. Brackley, J. D. Farrell, Zhong-Yang Xing +8 more
2020Proceedings of the National Academy of Sciences of the United States of America20 citations Open access
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Thermophoretic forces on a mesoscopic scale.
J. Burelbach, D. Brückner, D. Frenkel, E. Eiser
2018Soft Matter20 citations
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Structural analysis of high-dimensional basins of attraction.
Stefano Martiniani, K. J. Schrenk, J. D. Stevenson, D. Wales +1 more
2016Physical Review E20 citations Open access
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Receptor clustering tunes and sharpens the selectivity of multivalent binding
Zhao-Ping Xie, S. Angioletti-Uberti, J. Dobnikar, D. Frenkel +1 more
2025Proceedings of the National Academy of Sciences of the United States of America19 citations Open access
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Free energies of crystals computed using Einstein crystal with fixed center of mass and differing spring constants.
V. Khanna, J. Anwar, D. Frenkel, M. F. Doherty +1 more
2021Journal of Chemical Physics19 citations Open access
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Calculation of the water-octanol partition coefficient of cholesterol for SPC, TIP3P, and TIP4P water.
J. R. Espinosa, C. Wand, C. Vega, E. Sanz +1 more
2018Journal of Chemical Physics19 citations
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Reactive Momentum Transfer Contributes to the Self-Propulsion of Janus Particles.
Shaltiel Eloul, Wilson C. K. Poon, O. Farago, D. Frenkel
2020Physical Review Letters18 citations Open access
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Information density, structure and entropy in equilibrium and non-equilibrium systems
M. Zu, Arunkumar Bupathy, D. Frenkel, S. Sastry
2019Journal of Statistical Mechanics: Theory and Experiment18 citations Open access
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What experiments on pinned nanobubbles can tell about the critical nucleus for bubble nucleation
Qianxiang Xiao, Yawei Liu, Zhen-Jiang Guo, Zhi-Ping Liu +3 more
2017The European Physical Journal E : Soft matter18 citations Open access
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Non-equilibrium simulations of thermally induced electric fields in water.
P. Wirnsberger, D. Fijan, A. Šarić, M. Neumann +2 more
2016Journal of Chemical Physics18 citations Open access
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Structural and Linear Elastic Properties of DNA Hydrogels by Coarse-Grained Simulation
Zhong-Yang Xing, C. Ness, D. Frenkel, E. Eiser
2019Macromolecules17 citations Open access
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Pressure gradients fail to predict diffusio-osmosis
Yawei Liu, Raman S. Ganti, D. Frenkel
2018Journal of Physics: Condensed Matter17 citations Open access
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Communication: Simple approach for calculating the binding free energy of a multivalent particle.
N. Tito, S. Angioletti-Uberti, D. Frenkel
2016Journal of Chemical Physics17 citations Open access
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Emergence of complex behavior in pili-based motility in early stages of P. aeruginosa surface adaptation
Yifat Brill-Karniely, Fan Jin, G. C. Wong, D. Frenkel +1 more
2017Scientific Reports16 citations Open access
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Microscopic Marangoni Flows Cannot Be Predicted on the Basis of Pressure Gradients.
Yawei Liu, Raman S. Ganti, Hugh G. A. Burton, Xianren Zhang +2 more
2017Physical Review Letters16 citations Open access
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Nanoparticle Assembly: A Perspective and some Unanswered Questions
Sanat K. Kumar, G. Kumaraswamy, B. L. V. Prasad, Rajdip Bandyopadhyaya +5 more
201715 citations Open access
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Comparing theory and simulation for thermo-osmosis.
Karel Proesmans, D. Frenkel
2019Journal of Chemical Physics13 citations Open access
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Thermodynamics and kinetics of crystallization in deeply supercooled Stillinger-Weber silicon.
Yagyik Goswami, Vishwas V. Vasisht, D. Frenkel, P. Debenedetti +1 more
2021Journal of Chemical Physics12 citations Open access
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Lattice models and Monte Carlo methods for simulating DNA origami self-assembly.
A. Cumberworth, Aleks Reinhardt, D. Frenkel
2018Journal of Chemical Physics12 citations Open access
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Numerical evidence for thermally induced monopoles
Peter Wirnsberger, D. Fijan, R. Lightwood, A. Šarić +2 more
2016Proceedings of the National Academy of Sciences of the United States of America12 citations Open access
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