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D. Jeffares · SciRah

Researcher profile · Semantic Scholar

D. Jeffares

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D. Jeffares — researcher profile on SciRah

h-index: 29
Works: 87
Citations: 4,881

Most-cited papers

Comparative genomic analysis of three Leishmania species that cause diverse human disease
C. Peacock, K. Seeger, D. Harris, L. Murphy +38 more
2007Nature Genetics766 citations Open access
Semantic Scholar
Transient structural variations have strong effects on quantitative traits and reproductive isolation in fission yeast
D. Jeffares, C. Jolly, M. Hoti, D. Speed +6 more
2017Nature Communications699 citations Open access
Semantic Scholar
Rapidly regulated genes are intron poor.
D. Jeffares, C. Penkett, J. Bähler
2008Trends in Genetics438 citations
Semantic Scholar
The biology of intron gain and loss.
D. Jeffares, T. Mourier, D. Penny
2006Trends in Genetics285 citations
Semantic Scholar
The Path from the RNA World
Anthony M. Poole, D. Jeffares, D. Penny
1998Journal of Molecular Evolution282 citations
Semantic Scholar
Relics from the RNA World
D. Jeffares, Anthony M. Poole, D. Penny
1998Journal of Molecular Evolution260 citations
Semantic Scholar
Eukaryotic Intron Loss
T. Mourier, D. Jeffares
2003Science215 citations
Semantic Scholar
Genome variation and evolution of the malaria parasite Plasmodium falciparum
D. Jeffares, A. Pain, A. Berry, A. Cox +11 more
2006Nature Genetics206 citations Open access
Semantic Scholar
The Genomic and Phenotypic Diversity of Schizosaccharomyces pombe
D. Jeffares, Charalampos Rallis, A. Rieux, D. Speed +38 more
2015Nature Genetics182 citations Open access
Semantic Scholar
A beginners guide to estimating the non-synonymous to synonymous rate ratio of all protein-coding genes in a genome.
D. Jeffares, Bartlomiej Tomiczek, V. Sojo, Mario dos Reis
2015Methods in molecular biology162 citations
Semantic Scholar
Early evolution: prokaryotes, the new kids on the block.
Anthony M. Poole, D. Jeffares, D. Penny
1999Bioessays159 citations
Semantic Scholar
Supplementary Material for
D. Jeffares, M. Phillips, S. Moore, B. Veit
2004136 citations
Semantic Scholar
Genome-wide discovery and verification of novel structured RNAs in Plasmodium falciparum.
T. Mourier, C. Carret, S. Kyes, Z. Christodoulou +9 more
2008Genome Research93 citations Open access
Semantic Scholar
Selected Schizosaccharomyces pombe Strains Have Characteristics That Are Beneficial for Winemaking
A. Benito, D. Jeffares, F. Palomero, F. Calderón +3 more
2016PLoS ONE91 citations Open access
Semantic Scholar
LaSSO, a strategy for genome-wide mapping of intronic lariats and branch points using RNA-seq
Danny A. Bitton, Charalampos Rallis, D. Jeffares, Graeme C. M. Smith +4 more
2014Genome Research66 citations Open access
Semantic Scholar
A Leishmania infantum genetic marker associated with miltefosine treatment failure for visceral leishmaniasis
J. B. T. Carnielli, K. Crouch, S. Forrester, V. C. Silva +9 more
2018EBioMedicine62 citations Open access
Semantic Scholar
PCR amplification of the fas-1 gene for the detection of virulent strains of Rhodococcus fascians.
R. Stange, D. Jeffares, C. Young, D. Scott +2 more
199659 citations
Semantic Scholar
Ancestral Admixture Is the Main Determinant of Global Biodiversity in Fission Yeast
Sergio Tusso, B. Nieuwenhuis, F. Sedlazeck, J. Davey +2 more
2019Molecular biology and evolution54 citations Open access
Semantic Scholar
An Overview of the Introns-First Theory
D. Penny, M. Hoeppner, Anthony M. Poole, D. Jeffares
2009Journal of Molecular Evolution53 citations
Semantic Scholar
PoolHap: Inferring Haplotype Frequencies from Pooled Samples by Next Generation Sequencing
Quan Long, D. Jeffares, Qing-Run Zhang, Kai Ye +4 more
2011PLoS ONE46 citations Open access
Semantic Scholar
Temperature-dependence of carbon acquisition and demand in relation to shoot growth of kiwifruit (Actinidia deliciosa) vines grown in controlled environments
D. Greer, D. Jeffares
199846 citations
Semantic Scholar
Evolutionarily Stable Association of Intronic snoRNAs and microRNAs with Their Host Genes
M. Hoeppner, S. White, D. Jeffares, Anthony M. Poole
2009Genome Biology and Evolution44 citations Open access
Semantic Scholar
The genome of the zoonotic malaria parasite Plasmodium simium reveals adaptations to host switching
T. Mourier, Denise Anete Madureira de Alvarenga, A. Kaushik, Anielle de Pina-Costa +19 more
2021BMC Biology42 citations Open access
Semantic Scholar
Diversification of Genes Encoding Mei2-Like RNA Binding Proteins in Plants
G. H. Anderson, Nena Alvarez, Carmel Gilman, D. Jeffares +3 more
2004Plant Molecular Biology41 citations
Semantic Scholar
Direct isolation of poly(A)+ RNA from 4 M guanidine thiocyanate-lysed cell extracts using locked nucleic acid-oligo(T) capture.
Nana G. Jacobsen, P. S. Nielsen, D. Jeffares, J. Eriksen +3 more
2004Nucleic Acids Research41 citations Open access
Semantic Scholar
Comparative structural and evolutionary analyses predict functional sites in the artemisinin resistance malaria protein K13
R. Coppée, D. Jeffares, M. Miteva, A. Sabbagh +1 more
2019Scientific Reports38 citations Open access
Semantic Scholar
A description of the Mei2-like protein family; structure, phylogenetic distribution and biological context
D. Jeffares, M. Phillips, S. Moore, B. Veit
2004Development, Genes and Evolution37 citations
Semantic Scholar
The natural diversity and ecology of fission yeast
D. Jeffares
2018Yeast35 citations Open access
Semantic Scholar
Peer Review #1 of "Genome-wide identification and expression profile analysis of the Hsp20 gene family in Barley (Hordeum vulgare L.) (v0.1)"
Jie Li, Xin-Hao Liu, H. Bondino, E. Valle +124 more
201931 citations Open access
Semantic Scholar
Outsourcing the Nucleus: Nuclear Pore Complex Genes are no Longer Encoded in Nucleomorph Genomes
Nadja Neumann, D. Jeffares, Anthony M. Poole
2006Evolutionary bioinformatics online24 citations Open access
Semantic Scholar
Long- and Short-Term Selective Forces on Malaria Parasite Genomes
S. Nygaard, Alexander F. Braunstein, Gareth Malsen, S. van Dongen +8 more
2010PLoS Genetics22 citations Open access
Semantic Scholar
Reconstruction of Microbial Haplotypes by Integration of Statistical and Physical Linkage in Scaffolding
Chen Cao, Jing-Ni He, Lauren Mak, Deshan Perera +11 more
2021Molecular biology and evolution17 citations Open access
Semantic Scholar
Fitness Landscape of the Fission Yeast Genome
L. Grech, D. Jeffares, C. Sadée, María Rodríguez-López +13 more
2018bioRxiv17 citations Open access
Semantic Scholar
Ancestral aneuploidy and stable chromosomal duplication resulting in differential genome structure and gene expression control in trypanosomatid parasites
J. Reis-Cunha, Samuel A Pimenta-Carvalho, L. V. Almeida, Anderson Coqueiro-Dos-Santos +6 more
2024Genome Research16 citations Open access
Semantic Scholar
Parasite Genotype Is a Major Predictor of Mortality from Visceral Leishmaniasis
C. Grace, Kátia Silene Sousa Carvalho, Mayara Ingrid Sousa Lima, Vladimir Costa-Silva +9 more
2022bioRxiv15 citations Open access
Semantic Scholar
Spotsizer: High-throughput quantitative analysis of microbial growth
Leanne Bischof, M. Převorovský, Charalampos Rallis, D. Jeffares +2 more
2016BioTechniques14 citations Open access
Semantic Scholar
Co-infection of Leishmania infantum and a Crithidia-related species in a case of refractory relapsed visceral leishmaniasis with non-ulcerated cutaneous manifestation in Brazil
L. Rogerio, T. Y. Takahashi, Luria Cardoso, N. T. Takamiya +9 more
2023International Journal of Infectious Diseases13 citations Open access
Semantic Scholar
Experimental Selection of Paromomycin Resistance in Leishmania donovani Amastigotes Induces Variable Genomic Polymorphisms
S. Hendrickx, J. Reis-Cunha, S. Forrester, D. Jeffares +1 more
2021Microorganisms13 citations Open access
Semantic Scholar
Uncovering Natural Longevity Alleles from Intercrossed Pools of Aging Fission Yeast Cells
David A. Ellis, V. Mustonen, María Rodríguez-López, Charalampos Rallis +3 more
2018Genetics13 citations Open access
Semantic Scholar
Selective whole-genome amplification reveals population genetics of Leishmania braziliensis directly from patient skin biopsies
Olivia A Pilling, J. Reis-Cunha, C. Grace, Alexander S. F. Berry +15 more
2022medRxiv12 citations Open access
Semantic Scholar
Differences in non-LTR retrotransposons within C. elegans and C. briggsae genomes.
Mika Zagrobelny, D. Jeffares, P. Arctander
2004Gene11 citations
Semantic Scholar
Candidates for Balancing Selection in Leishmania donovani Complex Parasites
C. Grace, S. Forrester, V. C. Silva, Kátia Silene Sousa Carvalho +7 more
2021Genome Biology and Evolution8 citations Open access
Semantic Scholar
Pre-rRNA processing and the path from the RNA world.
D. Jeffares, Anthony M. Poole, D. Penny
1995TIBS -Trends in Biochemical Sciences. Regular ed8 citations
Semantic Scholar
Long-term hematopoietic stem cells trigger quiescence in Leishmania parasites
Laura Dirkx, S. V. Van Acker, Yasmine Nicolaes, J. R. Cunha +10 more
2024PLoS Pathogens7 citations Open access
Semantic Scholar
Identification of individual root-knot nematodes using low coverage long-read sequencing
Graham S. Sellers, D. Jeffares, Bex Lawson, T. Prior +1 more
2021PLoS ONE7 citations Open access
Semantic Scholar
R-loops and regulatory changes in chronologically ageing fission yeast cells drive non-random patterns of genome rearrangements
David A. Ellis, Félix Reyes-Martín, María Rodríguez-López, Cristina Cotobal +5 more
2019bioRxiv7 citations Open access
Semantic Scholar
Does the Ribosome Challenge our Understanding of the RNA World?
Anthony M. Poole, D. Jeffares, M. Hoeppner, D. Penny
2015Journal of Molecular Evolution7 citations
Semantic Scholar
Detecting complex infections in trypanosomatids using whole genome sequencing
J. Reis-Cunha, D. Jeffares
2024BMC Genomics5 citations Open access
Semantic Scholar
R-loops and regulatory changes in chronologically ageing fission yeast cells drive non-random patterns of genome rearrangements
David A. Ellis, Félix Reyes-Martín, María Rodríguez-López, Cristina Cotobal +6 more
2021PLoS Genetics5 citations Open access
Semantic Scholar
A Leishmania infantum genetic marker associated with miltefosine treatment failure for visceral leishmaniasis
K. Crouch, S. Forrester, V. C. Silva, S. F. G. Carvalho +8 more
20195 citations
Semantic Scholar

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S. Forrester×7
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T. Mourier×6
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Anthony M. Poole

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