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Y. Shimomura · SciRah

Researcher profile · Semantic Scholar

Y. Shimomura

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Y. Shimomura — researcher profile on SciRah

h-index: 18
Works: 37
Citations: 1,394

Most-cited papers

Patients with colorectal cancer have identical strains of Fusobacterium nucleatum in their colorectal cancer and oral cavity
Yasuhiko Komiya, Y. Shimomura, T. Higurashi, Yutaka Sugi +5 more
2018Gut295 citations Open access
Semantic Scholar
An acid-tolerant ammonia-oxidizing γ-proteobacterium from soil
M. Hayatsu, K. Tago, I. Uchiyama, A. Toyoda +9 more
2017The ISME Journal160 citations Open access
Semantic Scholar
Mitigation of nitrous oxide emissions from soils by Bradyrhizobium japonicum inoculation
Manabu Itakura, Y. Uchida, H. Akiyama, Y. Hoshino +10 more
2013156 citations
Semantic Scholar
C. elegans AMPKs promote survival and arrest germline development during nutrient stress
Masamitsu Fukuyama, Kensuke Sakuma, Riyong Park, Hidefumi Kasuga +8 more
2012Biology Open113 citations Open access
Semantic Scholar
Complete genome sequencing and analysis of a Lancefield group G Streptococcus dysgalactiae subsp. equisimilis strain causing streptococcal toxic shock syndrome (STSS)
Y. Shimomura, Kayo Okumura, S. Murayama, J. Yagi +3 more
2011BMC Genomics109 citations Open access
Semantic Scholar
Mitigation of soil N2O emission by inoculation with a mixed culture of indigenous Bradyrhizobium diazoefficiens
H. Akiyama, Y. Hoshino, Manabu Itakura, Y. Shimomura +6 more
2016Scientific Reports80 citations Open access
Semantic Scholar
Complete Genome Sequence of Bradyrhizobium sp. S23321: Insights into Symbiosis Evolution in Soil Oligotrophs
T. Okubo, Takahiro Tsukui, Hiroko Maita, Shinobu Okamoto +45 more
2012Microbes and Environments68 citations Open access
Semantic Scholar
Taxonomic classification for microbiome analysis, which correlates well with the metabolite milieu of the gut
Yoshihisa Wakita, Y. Shimomura, Yusuke Kitada, Hiroyuki Yamamoto +2 more
2018BMC Microbiology50 citations Open access
Semantic Scholar
Evolutionary paths of streptococcal and staphylococcal superantigens
Kayo Okumura, Y. Shimomura, S. Murayama, J. Yagi +3 more
2012BMC Genomics47 citations Open access
Semantic Scholar
Responses of denitrifying bacterial communities to short-term waterlogging of soils
Yong Wang, Y. Uchida, Y. Shimomura, H. Akiyama +1 more
2017Scientific Reports43 citations Open access
Semantic Scholar
Bifidobacterium animalis subsp. lactis LKM512 reduces levels of intestinal trimethylamine produced by intestinal microbiota in healthy volunteers: A double-blind, placebo-controlled study
M. Matsumoto, Yusuke Kitada, Y. Shimomura, Y. Naito
201738 citations Open access
Semantic Scholar
Environmental Factors Shaping the Community Structure of Ammonia-Oxidizing Bacteria and Archaea in Sugarcane Field Soil
K. Tago, T. Okubo, Y. Shimomura, Y. Kikuchi +3 more
2014Microbes and Environments31 citations Open access
Semantic Scholar
Concomitant regulation of host tissue-destroying virulence factors and carbohydrate metabolism during invasive diseases induced by group g streptococci.
Shinya Watanabe, Y. Shimomura, K. Ubukata, T. Kirikae +1 more
2013Journal of Infectious Diseases24 citations
Semantic Scholar
Oxidative stress by biphenyl metabolites induces inhibition of bacterial cell separation
T. Yamada, Y. Shimomura, Y. Hiraoka, K. Kimbara
2006Applied Microbiology and Biotechnology22 citations
Semantic Scholar
Cell surface structure enhancing uptake of polyvinyl alcohol (PVA) is induced by PVA in the PVA-utilizing Sphingopyxis sp. strain 113P3
Xiao-Ping Hu, R. Mamoto, Y. Shimomura, K. Kimbara +1 more
2007Archives of Microbiology20 citations
Semantic Scholar
Comparison among amoA Primers Suited for Quantification and Diversity Analyses of Ammonia-Oxidizing Bacteria in Soil
Y. Shimomura, S. Morimoto, Y. Hoshino, Y. Uchida +2 more
2011Microbes and Environments19 citations Open access
Semantic Scholar
Characteristics of ammonia oxidation potentials and ammonia oxidizers in mineral soil under Salix polaris–moss vegetation in Ny-Ålesund, Svalbard
Kentaro Hayashi, Y. Shimomura, S. Morimoto, M. Uchida +2 more
2016Polar Biology18 citations Open access
Semantic Scholar
Method for Assessment of Viability and Morphological Changes of Bacteria in the Early Stage of Colony Formation on a Simulated Natural Environment
Y. Shimomura, R. Ohno, F. Kawai, K. Kimbara
2006Applied and Environmental Microbiology18 citations
Semantic Scholar
Strain-level detection of Fusobacterium nucleatum in colorectal cancer specimens by targeting the CRISPR–Cas region
Y. Shimomura, Yutaka Sugi, A. Kume, Wataru Tanaka +9 more
2023Microbiology spectrum17 citations Open access
Semantic Scholar
Effect of dicyandiamide and polymer coated urea applications on N2O, NO and CH4 fluxes from Andosol and Fluvisol fields
H. Akiyama, Y. Uchida, K. Tago, Y. Hoshino +3 more
201515 citations Open access
Semantic Scholar
A 2,4-dichlorophenoxyacetic acid degradation plasmid pM7012 discloses distribution of an unclassified megaplasmid group across bacterial species.
Yoriko Sakai, N. Ogawa, Y. Shimomura, T. Fujii
2014Microbiology15 citations Open access
Semantic Scholar
Intestinal microbiota in neonates requiring urgent surgery: assessing the role of probiotics using fecal DNA sequencing
Hiroshi Murakami, Y. Shimomura, M. Matsumoto, G. Lane +2 more
2015Pediatric surgery international (Print)11 citations Open access
Semantic Scholar
Effects of functional milk containing galactooligosaccharide, maltitol, and glucomannan on the production of hydrogen gas in the human intestine
M. Matsumoto, A. Fujita, Ayano Yamashita, S. Kameoka +5 more
20179 citations Open access
Semantic Scholar
Construction of an anti-hepatitis B virus preS1 antibody and usefulness of preS1 measurement for chronic hepatitis B patients: Anti-HBV PreS1 antibody.
H. Hatooka, Y. Shimomura, M. Imamura, Yuji Teraoka +16 more
2021Journal of Infection8 citations Open access
Semantic Scholar
Characteristics of ammonia oxidation potentials and ammonia oxidizers in mineral soil under Salix polaris–moss vegetation in Ny-Ålesund, Svalbard
Kentaro Hayashi, Y. Shimomura, S. Morimoto, M. Uchida +2 more
2015Polar Biology3 citations Open access
Semantic Scholar
Prevention of catheter infection using a biodegradable tissue adhesive composed of human serum albumin and disuccinimidyl tartrate
T. Taguchi, M. Okada, Y. Kogai, M. Masuda +7 more
20143 citations
Semantic Scholar
Flow cytometry-based method for isolating live bacteria with meta-cleavage activity on dihydroxy compounds of biphenyl.
Sou Iijima, Y. Shimomura, Yousuke Haba, F. Kawai +2 more
2010Journal of Bioscience and Bioengineering3 citations Open access
Semantic Scholar
Relationship between Serum Bortezomib Concentration and Emergence of Diarrhea in Patients with Multiple Myeloma and/or AL Amyloidosis
Yuki Fujimoto, S. Ueno, Kazutaka Oda, N. Gunda +15 more
2021Cancers1 citations Open access
Semantic Scholar
Corrigendum to “ Bifidobacterium animalis subsp. lactis LKM512 reduces levels of intestinal trimethylamine produced by intestinal microbiota in healthy volunteers: A double-blind, placebo-controlled study” [J. Funct. Food 36 (2017) 94–101]
M. Matsumoto, Yusuke Kitada, Y. Shimomura, Y. Naito
20171 citations Open access
Semantic Scholar
Evaluation for Pharmaceutical Characteristics of Nalfurafine Orally Disintegrating Film Agent
Kazutaka Oda, K. Matsushita, Junpei Unoki, Kazuya Ozeki +20 more
2022Iryo Yakugaku (Japanese Journal of Pharmaceutical Health Care and Sciences)0 citations Open access
Semantic Scholar
Responses of denitrifying bacterial communities to short-term waterlogging of soils
Yong Wang, Y. Uchida, Y. Shimomura, H. Akiyama +1 more
2017Scientific Reports0 citations Open access
Semantic Scholar
Strain-level identification of Fusobacterium nucleatum based on PCR (targeted CRISPR)
Y. Shimomura, T. Higurashi, Yasuhiko Komiya, Shiori Uchiyama +3 more
20160 citations
Semantic Scholar
Enrichment of Acid-Tolerant Gamma-Proteobacterial Ammonia-Oxidizing Bacterium from Strongly Acidic Soils
M. Hayatsu, Y. Shimomura, Yong Wang, Y. Hirono +3 more
20140 citations
Semantic Scholar
P-138 Comparison of PCR primers suited for denaturing gradient gel electrophoresis (DGGE) and real-time PCR analysis of amoA from soil ammonia-oxidizing bacteria (AOB)(Poster Session)
Y. Shimomura, S. Morimoto, Y. Hoshino, Y. Uchida +2 more
20100 citations
Semantic Scholar
P-187 Structure of 2,4-D degrading megaplasmids distributed throughout paddy fields in Japan(Poster Session)
Yoriko Sakai, Y. Shimomura, N. Ogawa, T. Fujii
20100 citations
Semantic Scholar
Flow cytometry and cell-sorting method for isolating live bacteria with meta-cleavage activity on dihydroxy compounds of biphenyl
Sou Iijima, Y. Shimomura, A. Tani, K. Kimbara
20090 citations
Semantic Scholar
EN-P24 Flow cytometry and cell-sorting method for isolating live bacteria with meta-cleavage activity on dihydroxy compounds of biphenyl(Section VI Environmental Biotechnology)
Sou Iijima, Y. Shimomura, A. Tani, K. Kimbara
20090 citations
Semantic Scholar

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M. Hayatsu×12
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H. Akiyama×9
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M. Matsumoto×8
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Yong Wang×8
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K. Tago — researcher profile on SciRah

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Yusuke Kitada×4

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Yasuhiko Komiya×3

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Yasuhiko Komiya — researcher profile on SciRah