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I. Bodrenko · SciRah

Researcher profile · Semantic Scholar

I. Bodrenko

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I. Bodrenko — researcher profile on SciRah

h-index: 19
Works: 85
Citations: 1,343

Most-cited papers

Porins and small-molecule translocation across the outer membrane of Gram-negative bacteria
Julia Vergalli, I. Bodrenko, Muriel Masi, L. Moynié +7 more
2019Nature Reviews Microbiology353 citations Open access
Semantic Scholar
Getting Drugs into Gram-Negative Bacteria: Rational Rules for Permeation through General Porins.
S. Acosta-Gutiérrez, L. Ferrara, M. Pathania, Muriel Masi +10 more
2018ACS Infectious Diseases144 citations Open access
Semantic Scholar
Bacterial Outer Membrane Porins as Electrostatic Nanosieves: Exploring Transport Rules of Small Polar Molecules.
Harsha Bajaj, Silvia Acosta Gutiérrez, I. Bodrenko, G. Malloci +3 more
2017ACS Nano90 citations Open access
Semantic Scholar
General Method to Determine the Flux of Charged Molecules through Nanopores Applied to β-Lactamase Inhibitors and OmpF.
Ishan Ghai, A. Pira, M. A. Scorciapino, I. Bodrenko +4 more
2017Journal of Physical Chemistry Letters58 citations Open access
Semantic Scholar
Kanamycin uptake into Escherichia coli is facilitated by OmpF and OmpC porin channels located in the outer membrane.
J. Bafna, Eulàlia Sans-Serramitjana, S. Acosta-Gutiérrez, I. Bodrenko +5 more
2020ACS Infectious Diseases55 citations Open access
Semantic Scholar
Filtering with Electric Field: The Case of E. coli Porins.
S. Acosta-Gutiérrez, M. A. Scorciapino, I. Bodrenko, M. Ceccarelli
2015Journal of Physical Chemistry Letters53 citations Open access
Semantic Scholar
Getting Drugs through Small Pores: Exploiting the Porins Pathway in Pseudomonas aeruginosa.
Susruta Samanta, I. Bodrenko, S. Acosta-Gutiérrez, Tommaso D’Agostino +8 more
2018ACS Infectious Diseases37 citations Open access
Semantic Scholar
Hydrogen Storage in Aromatic Carbon Ring based Molecular Materials Decorated with Alkali or Alkali-Earth Metals
I. Bodrenko, A. Avdeenkov, D. G. Bessarabov, A. Bibikov +1 more
201231 citations
Semantic Scholar
Correlation energy functional from jellium surface analysis
L. Constantin, L. Chiodo, E. Fabiano, I. Bodrenko +1 more
201131 citations
Semantic Scholar
Rationalizing the permeation of polar antibiotics into Gram-negative bacteria
M. A. Scorciapino, S. Acosta-Gutiérrez, Dehbia Benkerrou, Tommaso D’Agostino +4 more
2017Journal of Physics: Condensed Matter29 citations Open access
Semantic Scholar
yVDAC2, the second mitochondrial porin isoform of Saccharomyces cerevisiae.
C. Guardiani, A. Magrì, A. Karachitos, M. D. Di Rosa +6 more
2018Biochimica et Biophysica Acta - Bioenergetics28 citations Open access
Semantic Scholar
Macroscopic electric field inside water-filled biological nanopores.
Silvia Acosta Gutiérrez, I. Bodrenko, M. A. Scorciapino, M. Ceccarelli
2016Physical Chemistry, Chemical Physics - PCCP27 citations
Semantic Scholar
A perspective on the modulation of plant and animal two pore channels (TPCs) by the flavonoid naringenin.
D. Benkerrou, V. Minicozzi, A. Gradogna, S. Milenkovic +8 more
2019Biophysical Chemistry23 citations
Semantic Scholar
Structural insights into the main S-layer unit of Deinococcus radiodurans reveal a massive protein complex with porin-like features
Domenica Farci, M. A. Aksoyoglu, Stefano Francesco Farci, J. Bafna +6 more
2020Journal of Biological Chemistry22 citations Open access
Semantic Scholar
Diffusion of large particles through small pores: From entropic to enthalpic transport.
I. Bodrenko, Samuele Salis, S. Acosta-Gutiérrez, M. Ceccarelli
2018Journal of Chemical Physics22 citations Open access
Semantic Scholar
Sensing Single Molecule Penetration into Nanopores: Pushing the Time Resolution to the Diffusion Limit.
I. Bodrenko, Jiajun Wang, Samuele Salis, M. Winterhalter +1 more
2017ACS Sensors21 citations
Semantic Scholar
Analysis of fast channel blockage: revealing substrate binding in the microsecond range.
I. Bodrenko, Harsha Bajaj, P. Ruggerone, M. Winterhalter +1 more
2015In Analysis21 citations
Semantic Scholar
Structural analysis of the architecture and in situ localization of the main S-layer complex in Deinococcus radiodurans.
Domenica Farci, Sami Kereïche, Sushil Pangeni, Patrycja Haniewicz +4 more
2021Structure19 citations Open access
Semantic Scholar
Basis set convergence studies of Hartree-Fock calculations of molecular properties within the resolution of the identity approximation.
A. Artemyev, A. Bibikov, V. Zayets, I. Bodrenko
2005Journal of Chemical Physics19 citations
Semantic Scholar
The Influence of Permeability through Bacterial Porins in Whole-Cell Compound Accumulation
S. Acosta-Gutiérrez, I. Bodrenko, M. Ceccarelli
2021Antibiotics16 citations Open access
Semantic Scholar
Thermodynamical model for hydrogen storage capacity in carbon nanostructures
A. Avdeenkov, I. Bodrenko, D. Bessarabov, A. Bibikov +4 more
201516 citations Open access
Semantic Scholar
Exploiting the porin pathway for polar compound delivery into Gram-negative bacteria.
M. A. Scorciapino, Tommaso D’Agostino, S. Acosta-Gutiérrez, G. Malloci +2 more
2016Future Medicinal Chemistry15 citations Open access
Semantic Scholar
The mechanism and energetics of a ligand-controlled hydrophobic gate in a mammalian two pore channel.
S. Milenkovic, I. Bodrenko, L. Lagostena, A. Gradogna +4 more
2020Physical Chemistry, Chemical Physics - PCCP13 citations
Semantic Scholar
Metastable ion production in the RCE process
V. V. Balashov, I. Bodrenko
200612 citations
Semantic Scholar
Characteristic X-ray production in the RCE process
V. V. Balashov, I. Bodrenko
200612 citations
Semantic Scholar
The key role of the central cavity in sodium transport through ligand-gated two-pore channels.
S. Milenkovic, I. Bodrenko, A. Carpaneto, M. Ceccarelli
2021Physical Chemistry, Chemical Physics - PCCP11 citations
Semantic Scholar
Theoretical study of molecular electronic excitations and optical transitions of C60
A. Nikolaev, I. Bodrenko, E. Tkalya
200711 citations Open access
Semantic Scholar
Machine Learning Prediction of Small Molecule Accumulation in Escherichia Coli Enhanced with Descriptor Statistics.
S. Milenkovic, Sara Boi, M. A. Scorciapino, I. Bodrenko +1 more
2024Journal of Chemical Theory and Computation10 citations
Semantic Scholar
Glucose transport via the pseudomonad porin OprB: implications for the design of Trojan Horse anti-infectives.
Joan Coines, S. Acosta-Gutiérrez, I. Bodrenko, C. Rovira +1 more
2019Physical Chemistry, Chemical Physics - PCCP9 citations
Semantic Scholar
Triple coincidence (e, 2e) measurements as a `perfect experiment' instrument for ionization-excitation studies
V. V. Balashov, I. Bodrenko
19999 citations Open access
Semantic Scholar
Triple coincidence (e,2e) measurements as a `perfect experiment' instrument for ionization-excitation studies
V. V. Balashov, I. Bodrenko
19999 citations
Semantic Scholar
Diffusion of molecules through nanopores under confinement: Time-scale bridging and crowding effects via Markov state model
I. Bodrenko, S. Milenkovic, M. Ceccarelli
2022Biomolecular Concepts7 citations Open access
Semantic Scholar
Multiple locations of boron atoms in the exohedral and endohedral C60 fullerene
A. Bibikov, A. Nikolaev, I. Bodrenko, P. Borisyuk +1 more
2022Physical Review A7 citations
Semantic Scholar
How to Get Large Drugs through Small Pores? Exploiting the Porins Pathway in Pseudomonas Aeruginosa
Susruta Samanta, Tommaso D’Agostino, Ishan Ghai, M. Pathania +7 more
20177 citations Open access
Semantic Scholar
Theoretical study of the pressure effect on the electron-capture β decay of 7Be in 7BeO and 7Be(OH)2
A. Bibikov, A. Avdeenkov, I. Bodrenko, A. Nikolaev +1 more
20137 citations
Semantic Scholar
Electronic and transport properties of rectangular graphene macromolecules and zigzag carbon nanotubes of finite length
A. Nikolaev, A. Bibikov, A. Avdeenkov, I. Bodrenko +1 more
20087 citations Open access
Semantic Scholar
The Effect of Lipopolysaccharides on the Electrostatic Properties of Gram-Negative General Porins from Enterobacteriaceae.
Matteo Ceccarelli, S. Milenkovic, I. Bodrenko
2024ChemPhysChem5 citations Open access
Semantic Scholar
TolC-AcrA complex formation monitored by time dependent single-channel electrophysiology.
I. Bodrenko, Tsedenia A. Zewdie, Jia-Jun Wang, Eshita Paul +2 more
2023Biochimie5 citations Open access
Semantic Scholar
Permeation of β-Lactamase Inhibitors through the General Porins of Gram-Negative Bacteria
A. Pira, M. A. Scorciapino, I. Bodrenko, A. Bosin +2 more
2020Molecules5 citations Open access
Semantic Scholar
Permeability Through Bacterial Porins Dictates Whole Cell Compound Accumulation
Silvia Acosta Gutiérrez, I. Bodrenko, M. Ceccarelli
20205 citations Open access
Semantic Scholar
Bacterial Porins as Electrostatic Nanosieves: Exploring Transport Rules of Small Polar Molecules
Harsha Bajaj, Silvia Acosta Gutiérrez, I. Bodrenko, G. Malloci +3 more
20185 citations Open access
Semantic Scholar
Electron capture beta decay of Be-7 encapsulated in C-60: Origin of increased electron density at the Be-7 nucleus
E. Tkalya, A. Bibikov, I. Bodrenko
20105 citations Open access
Semantic Scholar
Modified carbon nanostructures as materials for hydrogen storage
А. V. Avdeenkov, A. Bibikov, I. Bodrenko, А. V. Nikolaev +2 more
20095 citations
Semantic Scholar
How the physical properties of bacterial porins match environmental conditions.
S. Milenkovic, Jiajun Wang, S. Acosta-Gutiérrez, M. Winterhalter +2 more
2023Physical Chemistry, Chemical Physics - PCCP4 citations
Semantic Scholar
Electron capture beta decay of Be-7 located inside and outside the C-36 fullerene
E. V. Tkalya, A. Avdeenkov, A. Bibikov, I. Bodrenko +1 more
20124 citations
Semantic Scholar
Angular anisotropy of cascade photons in processes of dielectronic ion recombination
V. V. Balashov, I. Bodrenko, V. K. Dolinov, S. I. Strakhova
19944 citations
Semantic Scholar
The Optimal Permeation of Cyclic Boronates to Cross the Outer Membrane via the Porin Pathway
Gian Marco Tuveri, M. Ceccarelli, A. Pira, I. Bodrenko
2022Antibiotics3 citations Open access
Semantic Scholar
New Perspectives for Neutron Capture Radiation Therapy with 7Be. The Chemistry and Biochemistry Gap.
Mariano Andrea Scorciapino, Cláudia Nunes, M. Ceccarelli, E. Tkalya +1 more
2021Journal of Nanoscience and Nanotechnology3 citations
Semantic Scholar
A periodic charge-dipole electrostatic model. II. A kinetic-exchange-correlation correction.
I. Bodrenko, F. della Sala
2013Journal of Chemical Physics3 citations
Semantic Scholar
A periodic charge-dipole electrostatic model: parametrization for silver slabs.
I. Bodrenko, M. Sierka, E. Fabiano, F. della Sala
2012Journal of Chemical Physics3 citations
Semantic Scholar

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