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T. Milenković · SciRah

Researcher profile · Semantic Scholar

T. Milenković

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T. Milenković — researcher profile on SciRah

h-index: 30
Works: 97
Citations: 4,162

Most-cited papers

Evidence for Network Evolution in an Arabidopsis Interactome Map
M. Dreze, A. Carvunis, B. Charloteaux, M. Galli +60 more
2011Science900 citations Open access
Semantic Scholar
Uncovering Biological Network Function via Graphlet Degree Signatures
T. Milenković, Natasa Przulj
2008Cancer Informatics394 citations Open access
Semantic Scholar
Optimal Network Alignment with Graphlet Degree Vectors
T. Milenković, W. Ng, W. Hayes, Natasa Przulj
2010Cancer Informatics211 citations Open access
Semantic Scholar
MAGNA: Maximizing Accuracy in Global Network Alignment
V. Saraph, T. Milenković
2013Bioinform.197 citations Open access
Semantic Scholar
MAGNA++: Maximizing Accuracy in Global Network Alignment via both node and edge conservation
V. Vijayan, V. Saraph, T. Milenković
2015Bioinform.155 citations Open access
Semantic Scholar
Characterization of the proteasome interaction network using a QTAX-based tag-team strategy and protein interaction network analysis
Cortnie M. Guerrero, T. Milenković, Natasa Przulj, Peter Kaiser +1 more
2008Proceedings of the National Academy of Sciences of the United States of America153 citations Open access
Semantic Scholar
Survey of local and global biological network alignment: the need to reconcile the two sides of the same coin
P. Guzzi, T. Milenković
2017Briefings Bioinform.128 citations Open access
Semantic Scholar
Dominating Biological Networks
T. Milenković, Vesna Memišević, A. Bonato, Natasa Przulj
2011PLoS ONE122 citations Open access
Semantic Scholar
GraphCrunch: A tool for large network analyses
T. Milenković, J. Lai, Natasa Przulj
2008BMC Bioinformatics118 citations Open access
Semantic Scholar
Systems-level cancer gene identification from protein interaction network topology applied to melanogenesis-related functional genomics data
T. Milenković, Vesna Memišević, A. Ganesan, Natasa Przulj
2010Journal of the Royal Society Interface102 citations Open access
Semantic Scholar
Dynamic networks reveal key players in aging
F. E. Faisal, T. Milenković
2013ACM International Conference on Bioinformatics, Computational Biology and Biomedicine97 citations Open access
Semantic Scholar
The post-genomic era of biological network alignment
F. E. Faisal, L. Meng, Joseph Crawford, T. Milenković
2015EURASIP J. Bioinform. Syst. Biol.90 citations Open access
Semantic Scholar
Multiple Network Alignment via MultiMAGNA++
V. Vijayan, T. Milenković
2016IEEE/ACM Transactions on Computational Biology & Bioinformatics83 citations Open access
Semantic Scholar
Graphlet-based edge clustering reveals pathogen-interacting proteins
Ryan W. Solava, Ryan P. Michaels, T. Milenković
2012Bioinform.82 citations Open access
Semantic Scholar
Local versus global biological network alignment
L. Meng, A. Striegel, T. Milenković
2015Bioinform.78 citations Open access
Semantic Scholar
Global Network Alignment in the Context of Aging
F. E. Faisal, H. Zhao, T. Milenković
2015IEEE/ACM Transactions on Computational Biology & Bioinformatics77 citations
Semantic Scholar
Simultaneous Optimization of both Node and Edge Conservation in Network Alignment via WAVE
Yihan Sun, Joseph Crawford, Jie Tang, T. Milenković
2014Workshop on Algorithms in Bioinformatics75 citations Open access
Semantic Scholar
Proper evaluation of alignment-free network comparison methods
Omer Nebil Yaveroglu, T. Milenković, Natasa Przulj
2015Bioinform.68 citations Open access
Semantic Scholar
Characterization of Cell Cycle Specific Protein Interaction Networks of the Yeast 26S Proteasome Complex by the QTAX Strategy
Robyn M. Kaake, T. Milenković, Natasa Przulj, Peter Kaiser +1 more
2010Journal of Proteome Research53 citations Open access
Semantic Scholar
Optimized Null Model for Protein Structure Networks
T. Milenković, Ioannis Filippis, M. Lappe, Natasa Przulj
2009PLoS ONE51 citations Open access
Semantic Scholar
From homogeneous to heterogeneous network alignment via colored graphlets
Shawn Gu, John Johnson, F. E. Faisal, T. Milenković
2017Scientific Reports44 citations Open access
Semantic Scholar
Modeling multi-scale data via a network of networks
Shawn Gu, Meng Jiang, P. Guzzi, T. Milenković
2021Bioinform.43 citations Open access
Semantic Scholar
Alignment of dynamic networks
V. Vijayan, Dominic Critchlow, T. Milenković
2017Bioinform.39 citations Open access
Semantic Scholar
Protein interaction network topology uncovers melanogenesis regulatory network components within functional genomics datasets
Hsiang Ho, T. Milenković, Vesna Memišević, Jayavani Aruri +2 more
2010BMC Systems Biology38 citations Open access
Semantic Scholar
GRAFENE: Graphlet-based alignment-free network approach integrates 3D structural and sequence (residue order) data to improve protein structural comparison
F. E. Faisal, Khalique Newaz, Julie L. Chaney, Jun Li +3 more
2017Scientific Reports37 citations Open access
Semantic Scholar
GREAT: GRaphlet Edge-based network AlignmenT
Joseph Crawford, T. Milenković
2014IEEE International Conference on Bioinformatics and Biomedicine36 citations
Semantic Scholar
Revealing Missing Parts of the Interactome via Link Prediction
Yuriy Hulovatyy, Ryan W. Solava, T. Milenković
2014PLoS ONE35 citations Open access
Semantic Scholar
Fair evaluation of global network aligners
Joseph Crawford, Yihan Sun, T. Milenković
2014Algorithms for Molecular Biology33 citations Open access
Semantic Scholar
Complementarity of network and sequence information in homologous proteins
Vesna Memišević, T. Milenković, Natasa Przulj
2010Journal of Integrative Bioinformatics31 citations Open access
Semantic Scholar
On the Interplay Between Individuals’ Evolving Interaction Patterns and Traits in Dynamic Multiplex Social Networks
L. Meng, Yuriy Hulovatyy, A. Striegel, T. Milenković
2016IEEE Transactions on Network Science and Engineering30 citations Open access
Semantic Scholar
ClueNet: Clustering a temporal network based on topological similarity rather than denseness
Joseph Crawford, T. Milenković
2018PLoS ONE29 citations Open access
Semantic Scholar
CHARMING: Harmonizing synonymous codon usage to replicate a desired codon usage pattern
Gabriel Wright, A. Rodríguez, Jun Li, T. Milenković +2 more
2021Protein Science28 citations Open access
Semantic Scholar
Genome-wide profiling of 24 hr diel rhythmicity in the water flea, Daphnia pulex: network analysis reveals rhythmic gene expression and enhances functional gene annotation
Samuel S. C. Rund, Boyoung Yoo, Camille Alam, Taryn Green +7 more
2016BMC Genomics27 citations Open access
Semantic Scholar
An integrative approach to modeling biological networks
Vesna Memišević, T. Milenković, Natasa Przulj
2009Journal of Integrative Bioinformatics26 citations Open access
Semantic Scholar
Systems biology MAGNA 11 : Maximizing Accuracy in Global Network Alignment via both node and edge conservation
V. Vijayan, V. Saraph, T. Milenković
201524 citations
Semantic Scholar
Temporal network alignment via GoT-WAVE
David Oliveira Aparício, P. Ribeiro, T. Milenković, Fernando M. A. Silva
2019Bioinform.23 citations
Semantic Scholar
Network-based protein structural classification
Khalique Newaz, Mahboobeh Ghalehnovi, Arash Rahnama, P. Antsaklis +1 more
2018Royal Society Open Science23 citations Open access
Semantic Scholar
IGLOO: Integrating global and local biological network alignment
Lei Meng, Joseph Crawford, A. Striegel, T. Milenković
201622 citations
Semantic Scholar
Aligning dynamic networks with DynaWAVE
V. Vijayan, T. Milenković
2018Bioinform.21 citations Open access
Semantic Scholar
L-HetNetAligner: A novel algorithm for Local Alignment of Heterogeneous Biological Networks
Marianna Milano, T. Milenković, M. Cannataro, P. Guzzi
2020Scientific Reports20 citations Open access
Semantic Scholar
SCOUT: simultaneous time segmentation and community detection in dynamic networks
Yuriy Hulovatyy, T. Milenković
2016Scientific Reports18 citations Open access
Semantic Scholar
Heterogeneous Network Approach to Predict Individuals’ Mental Health
Shi-Kang Liu, Fatemeh Vahedian, David S. Hachen, Omar Alcides Lizardo +3 more
2019ACM Transactions on Knowledge Discovery from Data17 citations Open access
Semantic Scholar
Systematic Dynamic and Heterogeneous Analysis of Rich Social Network Data
L. Meng, T. Milenković, A. Striegel
2014Workshop on Complex Networks17 citations
Semantic Scholar
Data-driven network alignment
Shawn Gu, T. Milenković
2019PLoS ONE16 citations Open access
Semantic Scholar
Network analysis of the NetHealth data: exploring co-evolution of individuals’ social network positions and physical activities
Shi-Kang Liu, David S. Hachen, Omar Alcides Lizardo, Christian Poellabauer +2 more
2018Applied Network Science16 citations Open access
Semantic Scholar
Pairwise Versus Multiple Global Network Alignment
V. Vijayan, Shawn Gu, Eric T. Krebs, Lei Meng +1 more
2017IEEE Access16 citations Open access
Semantic Scholar
Synonymous codon substitutions modulate transcription and translation of a divergent upstream gene by modulating antisense RNA production
A. Rodríguez, Jacob D Diehl, Gabriel Wright, C. D. Bonar +8 more
2024Proceedings of the National Academy of Sciences of the United States of America13 citations
Semantic Scholar
Network analysis of synonymous codon usage
Khalique Newaz, Gabriel Wright, J. Piland, Jun Li +3 more
2019Bioinform.12 citations Open access
Semantic Scholar
Graphlets versus node2vec and struc2vec in the task of network alignment
Shawn Gu, T. Milenković
2018arXiv.org12 citations
Semantic Scholar
Improved supervised prediction of aging-related genes via weighted dynamic network analysis
Qi Li, Khalique Newaz, T. Milenković
2021BMC Bioinformatics11 citations Open access
Semantic Scholar

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Vesna Memišević

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