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S. Giacomello · SciRah

Researcher profile · Semantic Scholar

S. Giacomello

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S. Giacomello — researcher profile on SciRah

h-index: 23
Works: 64
Citations: 7,562

Most-cited papers

Visualization and analysis of gene expression in tissue sections by spatial transcriptomics
Patrik L. Ståhl, Fredrik Salmén, S. Vickovic, Anna Lundmark +17 more
2016Science3,505 citations
Semantic Scholar
The Norway spruce genome sequence and conifer genome evolution
B. Nystedt, N. Street, A. Wetterbom, A. Zuccolo +52 more
2013Nature1,440 citations Open access
Semantic Scholar
A Spatiotemporal Organ-Wide Gene Expression and Cell Atlas of the Developing Human Heart.
Michaela Asp, S. Giacomello, L. Larsson, Chenglin Wu +16 more
2019Cell693 citations Open access
Semantic Scholar
The Chinese pine genome and methylome unveil key features of conifer evolution.
Shihui Niu, Jiang Li, W. Bo, Wei-Fei Yang +32 more
2021Cell295 citations Open access
Semantic Scholar
Transcriptional Convergence of Oligodendrocyte Lineage Progenitors during Development
Sueli C Marques, D. van Bruggen, D. Vanichkina, E. Floriddia +9 more
2018Developmental Cell261 citations Open access
Semantic Scholar
Spatially resolved transcriptome profiling in model plant species
S. Giacomello, Fredrik Salmén, Barbara K. Terebieniec, S. Vickovic +10 more
2017Nature Plants194 citations
Semantic Scholar
Spatial metatranscriptomics resolves host–bacteria–fungi interactomes
Sami Saarenpää, Orly Shalev, H. Ashkenazy, Vanessa Carlos +3 more
2023Nature Biotechnology133 citations Open access
Semantic Scholar
Characterization of the Poplar Pan-Genome by Genome-Wide Identification of Structural Variation
S. Pinosio, S. Giacomello, P. Faivre-Rampant, G. Taylor +7 more
2016Molecular biology and evolution111 citations Open access
Semantic Scholar
A new era for plant science: spatial single-cell transcriptomics.
S. Giacomello
2021Current opinion in plant biology99 citations Open access
Semantic Scholar
The Impact of Endurance Training on Human Skeletal Muscle Memory, Global Isoform Expression and Novel Transcripts
M. Lindholm, S. Giacomello, Beata Werne Solnestam, H. Fischer +3 more
2016PLoS Genetics67 citations Open access
Semantic Scholar
Vision, challenges and opportunities for a Plant Cell Atlas
S. Jha, Alexander T. Borowsky, Benjamin J. Cole, N. Fahlgren +34 more
2021eLife60 citations Open access
Semantic Scholar
A New Era for Space Life Science: International Standards for Space Omics Processing
Lindsay Rutter, Richard Barker, D. Bezdan, H. Cope +15 more
2020Patterns59 citations Open access
Semantic Scholar
Best practices for the execution, analysis, and data storage of plant single-cell/nucleus transcriptomics
Carolin Grones, Thomas Eekhout, Dongbo Shi, Manuel Neumann +17 more
2024The Plant Cell58 citations Open access
Semantic Scholar
Prototypical pacemaker neurons interact with the resident microbiota
A. Klimovich, S. Giacomello, Å. Björklund, L. Faure +11 more
2020Proceedings of the National Academy of Sciences of the United States of America56 citations Open access
Semantic Scholar
Preparation of plant tissue to enable Spatial Transcriptomics profiling using barcoded microarrays
S. Giacomello, J. Lundeberg
2018Nature Protocols55 citations
Semantic Scholar
LTR Retrotransposons Show Low Levels of Unequal Recombination and High Rates of Intraelement Gene Conversion in Large Plant Genomes
R. M. Cossu, C. Casola, S. Giacomello, A. Vidalis +2 more
2017Genome Biology and Evolution54 citations Open access
Semantic Scholar
New resources for genetic studies in Populus nigra: genome‐wide SNP discovery and development of a 12k Infinium array
P. Faivre-Rampant, G. Zaina, V. Jorge, S. Giacomello +16 more
2016Molecular Ecology Resources51 citations Open access
Semantic Scholar
A Second Space Age Spanning Omics, Platforms, and Medicine Across Orbits
Christopher E. Mason, James Green, Konstantinos I Adamopoulos, Evan E. Afshin +80 more
2024Nature49 citations Open access
Semantic Scholar
Astronaut omics and the impact of space on the human body at scale
Lindsay A. Rutter, H. Cope, Matthew Mackay, Raúl Herranz +11 more
2024Nature Communications29 citations Open access
Semantic Scholar
Functionally distinct Purkinje cell types show temporal precision in encoding locomotion
Wei-Pang Chang, A. Pedroni, V. Hohendorf, S. Giacomello +3 more
2020Proceedings of the National Academy of Sciences of the United States of America28 citations Open access
Semantic Scholar
Spatially resolved multiomics on the neuronal effects induced by spaceflight in mice
Yuvarani Masarapu, Egle Cekanaviciute, Žaneta Andrusivová, J. Westholm +20 more
2024Nature Communications27 citations Open access
Semantic Scholar
Dual spatially resolved transcriptomics for human host–pathogen colocalization studies in FFPE tissue sections
Hailey Sounart, E. Lázár, Yuvarani Masarapu, Jian Wu +12 more
2023Genome Biology25 citations Open access
Semantic Scholar
Automation of Spatial Transcriptomics library preparation to enable rapid and robust insights into spatial organization of tissues
E. Berglund, Sami Saarenpää, Anders Jemt, Joel Gruselius +4 more
2020BMC Genomics25 citations Open access
Semantic Scholar
The Chironomus tentans genome sequence and the organization of the Balbiani ring genes
A. Kutsenko, T. Svensson, B. Nystedt, J. Lundeberg +5 more
2014BMC Genomics23 citations Open access
Semantic Scholar
Challenges and considerations for single-cell and spatially resolved transcriptomics sample collection during spaceflight
Eliah G. Overbey, Saswati Das, H. Cope, Pedro Madrigal +15 more
2022Cell Reports Methods22 citations Open access
Semantic Scholar
Routine omics collection is a golden opportunity for European human research in space and analog environments
H. Cope, Craig R. G. Willis, Matthew Mackay, Lindsay Rutter +10 more
2022Patterns19 citations Open access
Semantic Scholar
Claustrum and dorsal endopiriform cortex complex cell-identity is determined by Nurr1 and regulates hallucinogenic-like states in mice
Ioannis Mantas, Ivana Flais, Yuvarani Masarapu, T. Ionescu +14 more
2024Nature Communications16 citations Open access
Semantic Scholar
Spatially resolved host-bacteria-fungi interactomes via spatial metatranscriptomics
Sami Saarenpää, Orly Shalev, H. Ashkenazy, Vanessa de Oliveira-Carlos +3 more
2022bioRxiv16 citations Open access
Semantic Scholar
Genome-wide identification of Wig-1 mRNA targets by RIP-Seq analysis
C. Bersani, Mikael Huss, S. Giacomello, Li-Di Xu +8 more
2015OncoTarget16 citations Open access
Semantic Scholar
Purkinje cells located in the adult zebrafish valvula cerebelli exhibit variable functional responses
Wei-Pang Chang, A. Pedroni, R. Köster, S. Giacomello +1 more
2021Scientific Reports14 citations Open access
Semantic Scholar
Revamping Space-omics in Europe.
Pedro Madrigal, A. Gabel, Alicia Villacampa, Aránzazu Manzano +14 more
2020Cell Systems12 citations Open access
Semantic Scholar
High cardiomyocyte diversity in human early prenatal heart development
C. Sylvén, Eva Wärdell, A. Månsson-Broberg, E. Cingolani +4 more
2022bioRxiv11 citations Open access
Semantic Scholar
Space omics research in Europe: Contributions, geographical distribution and ESA member state funding schemes
C. Deane, W. D. da Silveira, R. Herranz, J. Borg +17 more
2022iScience10 citations Open access
Semantic Scholar
Genomic Characterization of the Barnacle Balanus improvisus Reveals Extreme Nucleotide Diversity in Coding Regions
Magnus Alm Rosenblad, A. Abramova, Ulrika Lind, P. Olason +3 more
2021Marine Biotechnology8 citations Open access
Semantic Scholar
Protective alleles and precision healthcare in crewed spaceflight
Lindsay A. Rutter, Matthew Mackay, H. Cope, Nathaniel J. Szewczyk +11 more
2024Nature Communications7 citations Open access
Semantic Scholar
Towards high-throughput parallel imaging and single-cell transcriptomics of microbial eukaryotic plankton
Vesna Grujčić, Sami Saarenpää, J. Sundh, B. Sennblad +5 more
2023bioRxiv7 citations Open access
Semantic Scholar
Enabling automated and reproducible spatially resolved transcriptomics at scale
L. Stenbeck, Fanny Taborsak-Lines, S. Giacomello
2022bioRxiv7 citations Open access
Semantic Scholar
Single-cell transcriptomic profiling of progenitors of the oligodendrocyte lineage reveals transcriptional convergence during development
Sueli C Marques, D. Vanichkina, D. van Bruggen, E. Floriddia +12 more
2017bioRxiv7 citations Open access
Semantic Scholar
Standalone single- and bi-layered human skin 3D models supported by recombinant silk feature native spatial organization
Savvini Gkouma, N. Bhalla, Solène Frapard, Alexander Jönsson +7 more
2024Biofabrication6 citations Open access
Semantic Scholar
Miniature spatial transcriptomics for studying parasite-endosymbiont relationships at the micro scale
Hailey Sounart, D. Voronin, Yuvarani Masarapu, M. Chung +3 more
2023Nature Communications4 citations Open access
Semantic Scholar
Spatiotemporal analysis reveals distinct inflammatory programs underlying chronic colitis.
Jennifer Fransson, C. Sorini, Francisca Castillo, Yu-Hao Chi +14 more
2026Immunity3 citations Open access
Semantic Scholar
Dual spatially resolved transcriptomics for SARS-CoV-2 host-pathogen colocalization studies in humans
Hailey Sounart, E. Lázár, Yuvarani Masarapu, Jian Wu +10 more
2022bioRxiv3 citations Open access
Semantic Scholar
Enhancing European capabilities for application of multi-omics studies in biology and biomedicine space research
Aránzazu Manzano, S. Weging, D. Bezdan, J. Borg +18 more
2023iScience2 citations Open access
Semantic Scholar
Miniature spatial transcriptomics for studying parasite-endosymbiont relationships at the micro scale
Hailey Sounart, D. Voronin, Yuvarani Masarapu, M. Chung +3 more
2022bioRxiv2 citations Open access
Semantic Scholar
Norway spruce spatiotemporal programs of conifer reproductive development.
Sami Saarenpää, N. Zivi, Yuvarani Masarapu, Laxmi S. Mishra +10 more
2026Cell1 citations Open access
Semantic Scholar
ProbeST: a custom probe design pipeline for dual host–pathogen Spatial Transcriptomics
Sofia Rouot, Ireen van Dolderen, P. R. Andreassen, Solène Frapard +5 more
2026BMC Genomics1 citations Open access
Semantic Scholar
Omics Technologies in Spaceflight: Challenges and Considerations for Applying Single-Cell and Spatially Resolved Gene Expression Technologies to Samples Collected In-Flight
Eliah G. Overbey, Saswati Das, H. Cope, Pedro Madrigal +14 more
2022Social Science Research Network1 citations Open access
Semantic Scholar
An Organ-Wide Gene Expression Atlas of the Developing Human Heart
Michaela Asp, S. Giacomello, Daniel Fürth, Johan Reimegård +10 more
20181 citations
Semantic Scholar
The Chironomus tentans genome sequence and the organization of the Balbiani ring genes
A. Kutsenko, T. Svensson, B. Nystedt, J. Lundeberg +5 more
2014BMC Genomics1 citations Open access
Semantic Scholar
Building AI-Ready Data Systems for Space Life Sciences, Aerospace Medicine, and Deep Space Exploration
Sylvain V. Costes, Sergio Garcia Busto, Ryan T. Scott, James A. Casaletto +14 more
2026arXiv.org0 citations
Semantic Scholar

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