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Mikael Huss · SciRah

Researcher profile · Semantic Scholar

Mikael Huss

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Mikael Huss — researcher profile on SciRah

h-index: 34
Works: 82
Citations: 16K

Most-cited papers

Visualization and analysis of gene expression in tissue sections by spatial transcriptomics
Patrik L. Ståhl, Fredrik Salmén, S. Vickovic, Anna Lundmark +17 more
2016Science3,505 citations
Semantic Scholar
Integration of external signaling pathways with the core transcriptional network in embryonic stem cells.
X. Chen, Han Xu, Ping Yuan, Fang Fang +19 more
2008Cell2,643 citations Open access
Semantic Scholar
Analysis of the Human Tissue-specific Expression by Genome-wide Integration of Transcriptomics and Antibody-based Proteomics*
L. Fagerberg, B. Hallström, P. Oksvold, C. Kampf +30 more
2013Molecular & Cellular Proteomics2,445 citations Open access
Semantic Scholar
Analysis of the Human Tissue-specific Expression by Genome-wide Integration of Transcriptomics and Antibody-based Proteomics.
L. Fagerberg, B. Hallström, P. Oksvold, C. Kampf +30 more
2014Molecular & Cellular Proteomics1,177 citations Open access
Semantic Scholar
Resolution of cell fate decisions revealed by single-cell gene expression analysis from zygote to blastocyst.
G. Guo, Mikael Huss, Guo-Qing Tong, Chaoyang Wang +3 more
2010Developmental Cell867 citations Open access
Semantic Scholar
A primer on deep learning in genomics
James Zou, Mikael Huss, Abubakar Abid, P. Mohammadi +2 more
2018Nature Genetics786 citations Open access
Semantic Scholar
Open chromatin defined by DNaseI and FAIRE identifies regulatory elements that shape cell-type identity.
Ling-Yun Song, Zhan-Cheng Zhang, L. Grasfeder, A. Boyle +22 more
2011Genome Research532 citations Open access
Semantic Scholar
The nuclear receptor Nr5a2 can replace Oct4 in the reprogramming of murine somatic cells to pluripotent cells.
Jian-Chien Heng, Bo Feng, Jianyong Han, Jianming Jiang +8 more
2010Cell Stem Cell505 citations Open access
Semantic Scholar
A genome-wide RNAi screen reveals determinants of human embryonic stem cell identity
N. Chia, Yun-Shen Chan, Bo Feng, Xin-Yi Lu +15 more
2010Nature494 citations
Semantic Scholar
Subnetwork hierarchies of biochemical pathways
Petter Holme, Mikael Huss, Hawoong Jeong
2002Bioinform.359 citations Open access
Semantic Scholar
HiRIEF LC-MS enables deep proteome coverage and unbiased proteogenomics
R. Branca, L. Orre, H. Johansson, Viktor Granholm +5 more
2013Nature Methods272 citations Open access
Semantic Scholar
Eset partners with Oct4 to restrict extraembryonic trophoblast lineage potential in embryonic stem cells.
Ping Yuan, Jianyong Han, G. Guo, Y. Orlov +6 more
2009Genes & Development260 citations Open access
Semantic Scholar
Breast cancer quantitative proteome and proteogenomic landscape
H. Johansson, F. Socciarelli, Nathaniel M. Vacanti, M. Haugen +43 more
2019Nature Communications202 citations Open access
Semantic Scholar
The Human Gut Microbiome as a Transporter of Antibiotic Resistance Genes between Continents
J. Bengtsson-Palme, Martin Angelin, Mikael Huss, S. Kjellqvist +4 more
2015Antimicrobial Agents and Chemotherapy187 citations Open access
Semantic Scholar
Quality Control and Preprocessing
E. Korpelainen, J. Tuimala, P. Somervuo, Mikael Huss +1 more
2014147 citations
Semantic Scholar
Discovery of coding regions in the human genome by integrated proteogenomics analysis workflow
Ya-Feng Zhu, L. Orre, H. Johansson, Mikael Huss +5 more
2018Nature Communications140 citations Open access
Semantic Scholar
Supplementary information for Integrative model of genomic factors for determining binding site selection by estrogen receptor α
R. Joseph, Y. Orlov, Mikael Huss, Wen-Jie Sun +11 more
2010123 citations
Semantic Scholar
Identification of Salivary Microbiota and Its Association With Host Inflammatory Mediators in Periodontitis
Anna Lundmark, Yue O. O. Hu, Mikael Huss, G. Johannsen +2 more
2019Frontiers in Cellular and Infection Microbiology121 citations Open access
Semantic Scholar
Integration of molecular profiles in a longitudinal wellness profiling cohort
A. Tebani, A. Gummesson, Wen Zhong, I. S. Koistinen +34 more
2020Nature Communications97 citations Open access
Semantic Scholar
The human cardiac and skeletal muscle proteomes defined by transcriptomics and antibody-based profiling
C. Lindskog, Jerker Linné, L. Fagerberg, B. Hallström +13 more
2015BMC Genomics85 citations Open access
Semantic Scholar
Reprogramming of Yersinia from Virulent to Persistent Mode Revealed by Complex In Vivo RNA-seq Analysis
K. Avican, A. Fahlgren, Mikael Huss, Ann Kathrin Heroven +3 more
2015PLoS Pathogens84 citations Open access
Semantic Scholar
The human skeletal muscle transcriptome: sex differences, alternative splicing, and tissue homogeneity assessed with RNA sequencing
M. Lindholm, Mikael Huss, Beata Werne Solnestam, S. Kjellqvist +2 more
2014The FASEB Journal75 citations Open access
Semantic Scholar
The Impact of Endurance Training on Human Skeletal Muscle Memory, Global Isoform Expression and Novel Transcripts
M. Lindholm, S. Giacomello, Beata Werne Solnestam, H. Fischer +3 more
2016PLoS Genetics67 citations Open access
Semantic Scholar
The role of Cdx2 as a lineage specific transcriptional repressor for pluripotent network during the first developmental cell lineage segregation
Daosheng Huang, G. Guo, Ping Yuan, A. Ralston +10 more
2017Scientific Reports63 citations Open access
Semantic Scholar
Majority of differentially expressed genes are down-regulated during malignant transformation in a four-stage model
Frida Danielsson, Marie Skogs, Mikael Huss, E. Rexhepaj +6 more
2013Proceedings of the National Academy of Sciences of the United States of America63 citations Open access
Semantic Scholar
Cryptosporidium as a testbed for single cell genome characterization of unicellular eukaryotes
K. Troell, Björn Hallström, Anna‐Maria Divne, Cecilia Alsmark +4 more
2016BMC Genomics54 citations Open access
Semantic Scholar
Q&A: ChIP-seq technologies and the study of gene regulation
Edison T. Liu, Sebastian Pott, Mikael Huss
2010BMC Biology52 citations Open access
Semantic Scholar
Transcriptome and Proteome Profiling of Neural Induced Pluripotent Stem Cells from Individuals with Down Syndrome Disclose Dynamic Dysregulations of Key Pathways and Cellular Functions
M. Sobol, J. Klar, Loora Laan, Mansoureh Shahsavani +10 more
2019Molecular Neurobiology51 citations Open access
Semantic Scholar
Supplemental Information The Nuclear Receptor Nr 5 a 2 Can Replace Oct 4 in the Reprogramming of Murine Somatic Cells to Pluripotent Cells
Jian-Chien Heng, Bo Feng, Jianyong Han, Jianming Jiang +6 more
200951 citations
Semantic Scholar
Impact of genetic risk loci for multiple sclerosis on expression of proximal genes in patients
T. James, M. Lindén, Hiromasa Morikawa, S. J. Fernandes +10 more
2018Human Molecular Genetics48 citations Open access
Semantic Scholar
Role-similarity based functional prediction in networked systems: application to the yeast proteome
P. Holme, Mikael Huss
2005Journal of the Royal Society Interface43 citations Open access
Semantic Scholar
RNA-seq Data Analysis: A Practical Approach
E. Korpelainen, J. Tuimala, P. Somervuo, Mikael Huss +1 more
201442 citations
Semantic Scholar
Transcriptomes of Dravet syndrome iPSC derived GABAergic cells reveal dysregulated pathways for chromatin remodeling and neurodevelopment.
J. Schuster, Loora Laan, J. Klar, Zhe Jin +6 more
2019Neurobiology of Disease41 citations Open access
Semantic Scholar
Evolutionary history of host use, rather than plant phylogeny, determines gene expression in a generalist butterfly
Maria de la Paz Celorio-Mancera, C. Wheat, Mikael Huss, F. Vezzi +4 more
2016BMC Evolutionary Biology39 citations Open access
Semantic Scholar
Differential Expression Analysis
E. Korpelainen, J. Tuimala, P. Somervuo, Mikael Huss +1 more
201434 citations
Semantic Scholar
Introduction into the analysis of high-throughput-sequencing based epigenome data
Mikael Huss
2010Briefings Bioinform.30 citations
Semantic Scholar
Distinct transcription factor complexes act on a permissive chromatin landscape to establish regionalized gene expression in CNS stem cells
Daniel W. Hagey, Cécile Zaouter, Gaëlle Combeau, Monika Andersson Lendahl +3 more
2016Genome Research28 citations Open access
Semantic Scholar
The Network Organization of Cancer-associated Protein Complexes in Human Tissues
Jing Zhao, Sang Hoon Lee, Mikael Huss, Petter Holme
2013Scientific Reports27 citations Open access
Semantic Scholar
Stationary and portable sequencing-based approaches for tracing wastewater contamination in urban stormwater systems
Yue O. O. Hu, N. Ndegwa, J. Alneberg, Sebastian Johansson +6 more
2018Scientific Reports25 citations Open access
Semantic Scholar
Assessing the consistency of public human tissue RNA-seq data sets
Frida Danielsson, T. James, D. Gómez-Cabrero, Mikael Huss
2015Briefings Bioinform.22 citations Open access
Semantic Scholar
Identification of mutations, gene expression changes and fusion transcripts by whole transcriptome RNAseq in docetaxel resistant prostate cancer cells
Yuanjun Ma, Y. Miao, Z. Peng, J. Sandgren +7 more
2016SpringerPlus21 citations Open access
Semantic Scholar
Genome-wide identification of Wig-1 mRNA targets by RIP-Seq analysis
C. Bersani, Mikael Huss, S. Giacomello, Li-Di Xu +8 more
2015OncoTarget16 citations Open access
Semantic Scholar
Substance graphs are optimal simple-graph representations of metabolism
Petter Holme, Mikael Huss
200815 citations Open access
Semantic Scholar
Assessment of Whole Genome Amplification for Sequence Capture and Massively Parallel Sequencing
Johanna Hasmats, Henrik Gréen, C. Oréar, P. Validire +3 more
2014PLoS ONE13 citations Open access
Semantic Scholar
Next-Generation Sequencing of Apoptotic DNA Breakpoints Reveals Association with Actively Transcribed Genes and Gene Translocations
M. Fullwood, Joanne Lee, Lifang Lin, Guoliang Li +4 more
2011PLoS ONE13 citations Open access
Semantic Scholar
Atmospheric Reaction Systems as Null-Models to Identify Structural Traces of Evolution in Metabolism
Petter Holme, Mikael Huss, Sang Hoon Lee
2011PLoS ONE12 citations Open access
Semantic Scholar
Discovery and analysis of biochemical subnetwork hierarchies
Petter Holme, Mikael Huss
200310 citations
Semantic Scholar
Publisher Correction: Discovery of coding regions in the human genome by integrated proteogenomics analysis workflow
Ya-Feng Zhu, L. Orre, H. Johansson, Mikael Huss +5 more
2018Nature Communications9 citations Open access
Semantic Scholar
Computer and statistical analysis of transcription factor binding and chromatin modifications by ChIP-seq data in embryonic stem cell.
Y. Orlov, Han Xu, D. Afonnikov, B. Lim +10 more
2012Journal of Integrative Bioinformatics7 citations
Semantic Scholar
Genome-wide statistical analysis of multiple transcription factor binding sites obtained by chip-seq technologies
Y. Orlov, Mikael Huss, R. Joseph, Han Xu +7 more
2009CompBio '097 citations
Semantic Scholar

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