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J. Headd · SciRah

Researcher profile · Semantic Scholar

J. Headd

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J. Headd — researcher profile on SciRah

h-index: 19
Works: 34
Citations: 39K

Most-cited papers

PHENIX: a comprehensive Python-based system for macromolecular structure solution
Paul D. Adams, P. Afonine, G. Bunkoczi, Vincent B. Chen +14 more
2010Acta Crystallographica Section D: Biological Crystallography23K citations Open access
Semantic Scholar
Towards automated crystallographic structure refinement with phenix.refine
P. Afonine, R. Grosse-Kunstleve, N. Echols, J. Headd +6 more
2012Acta Crystallographica Section D: Biological Crystallography5,129 citations Open access
Semantic Scholar
MolProbity: More and better reference data for improved all‐atom structure validation
Christopher J. Williams, J. Headd, Nigel W. Moriarty, M. G. Prisant +14 more
2018Protein Science4,270 citations Open access
Semantic Scholar
MolProbity: all-atom structure validation for macromolecular crystallography
Vincent B. Chen, W. Arendall, J. Headd, D. Keedy +5 more
2009Acta Crystallographica Section D: Biological Crystallography3,731 citations Open access
Semantic Scholar
The Phenix Software for Automated Determination of Macromolecular Structures
P. Adams, P. Afonine, G. Bunkoczi, Vincent B. Chen +14 more
2011Methods899 citations Open access
Semantic Scholar
Chapter 21.6 MolProbity: all-atom structure validation for macromolecular crystallography
Vincent B. Chen, W. Arendall, J. Headd, D. Keedy +5 more
2012482 citations
Semantic Scholar
RNA backbone: consensus all-angle conformers and modular string nomenclature (an RNA Ontology Consortium contribution).
J. Richardson, B. Schneider, L. W. Murray, Gary J. Kapral +11 more
2008RNA: A publication of the RNA Society259 citations Open access
Semantic Scholar
Use of knowledge-based restraints in phenix.refine to improve macromolecular refinement at low resolution
J. Headd, Nathaniel Echols, P. Afonine, R. Grosse-Kunstleve +5 more
2012Acta Crystallographica Section D: Biological Crystallography237 citations Open access
Semantic Scholar
Improved low-resolution crystallographic refinement with Phenix and Rosetta
F. DiMaio, N. Echols, J. Headd, T. Terwilliger +2 more
2013Nature Methods188 citations Open access
Semantic Scholar
New tools for structure refinement in PHENIX
P. Adams, P. Afonine, N. Echols, J. Headd +2 more
2010178 citations
Semantic Scholar
Graphical tools for macromolecular crystallography in PHENIX
N. Echols, R. Grosse-Kunstleve, P. Afonine, G. Bunkoczi +9 more
2012Journal of Applied Crystallography155 citations Open access
Semantic Scholar
phenix.model_vs_data: a high-level tool for the calculation of crystallographic model and data statistics
P. Afonine, R. Grosse-Kunstleve, Vincent B. Chen, J. Headd +6 more
2010Journal of Applied Crystallography120 citations Open access
Semantic Scholar
Co-Crystal Structures of PKG Iβ (92–227) with cGMP and cAMP Reveal the Molecular Details of Cyclic-Nucleotide Binding
J. J. Kim, D. Casteel, G. Huang, T. H. Kwon +7 more
2011PLoS ONE68 citations Open access
Semantic Scholar
Protein-protein interfaces: properties, preferences, and projections.
J. Headd, Y. E. Andrew Ban, P. Brown, H. Edelsbrunner +2 more
2007Journal of Proteome Research50 citations
Semantic Scholar
Automating crystallographic structure solution and refinement of protein–ligand complexes
N. Echols, N. Moriarty, H. Klei, P. Afonine +7 more
2013Acta Crystallographica Section D: Biological Crystallography48 citations Open access
Semantic Scholar
Characterizing protein crystal contacts and their role in crystallization: rubredoxin as a case study
D. Fusco, J. Headd, A. De Simone, Jun Wang +1 more
2012Soft Matter46 citations Open access
Semantic Scholar
Autofix for backward-fit sidechains: using MolProbity and real-space refinement to put misfits in their place
J. Headd, R. Immormino, D. Keedy, P. Emsley +2 more
2008Journal of Structural and Functional Genomics41 citations Open access
Semantic Scholar
Flexible torsion-angle noncrystallographic symmetry restraints for improved macromolecular structure refinement
J. Headd, N. Echols, P. Afonine, N. Moriarty +2 more
2014Acta Crystallographica Section D: Biological Crystallography26 citations Open access
Semantic Scholar
IMP1 3' UTR shortening enhances metastatic burden in colorectal cancer.
Sarah F. Andres, K. Williams, Jacqueline B Plesset, J. Headd +7 more
2018Carcinogenesis20 citations Open access
Semantic Scholar
Interactive comparison and remediation of collections of macromolecular structures
N. Moriarty, D. Liebschner, H. Klei, N. Echols +4 more
2018Protein Science14 citations Open access
Semantic Scholar
Preoperative Behavioral Health, Opioid, and Antidepressant Utilization and Two-Year Costs After Spinal Fusion-Revelations from Cluster Analysis.
J. Lerner, Jill R Ruppenkamp, K. Etter, J. Headd +4 more
2020Spine12 citations
Semantic Scholar
Improved low-resolution crystallographic refinement with Phenix and Rosetta
Nathaniel Echols, F. DiMaio, J. Headd, T. C. Terwilliger +2 more
20143 citations Open access
Semantic Scholar
The crystal structures of PKG Iβ (92-227) with cGMP and cAMP reveal the molecular details of cyclic-nucleotide binding
J. J. Kim, D. Casteel, G. Huang, T. H. Kwon +7 more
2011BMC Pharmacology2 citations Open access
Semantic Scholar
Su1772 - The RNA Binding Protein Imp1 Enhances Colon Cancer Metastasis via Promotion of a Pro-Metastatic Gene Expression Program
Sarah F. Andres, K. Williams, Kathryn E. Hamilton, Rei Mizuno +3 more
20180 citations
Semantic Scholar
The role of crystal contacts in protein crystallization: soft matter characterization of two protein families
D. Fusco, J. Headd, A. De Simone, Jun Wang +1 more
20140 citations
Semantic Scholar
Lawrence Berkeley National Laboratory Recent Work Title Automating crystallographic structure solution and refinement of protein-ligand complexes Permalink
N. Echols, W. Nigel, Moriarty, H. Klei +10 more
20130 citations
Semantic Scholar
Characterizing protein crystal contacts and their role in protein crystallization
D. Fusco, J. Headd, A. De Simone, P. Charbonneau
20120 citations
Semantic Scholar
Towards automated crystallographic structure refinement with phenix . refine
P. Afonine, R. Grosse-Kunstleve, Nathaniel Echols, J. Headd +6 more
20120 citations
Semantic Scholar
Crystal structure of partial apo (92-227) of cGMP-dependent protein kinase
J. J. Kim, G. Huang, T. Kwon, P. Zwart +2 more
20110 citations
Semantic Scholar
Graphical tools for structure determination and refinement in PHENIX
N. Echols, P. Afonine, G. Bunkoczi, Vincent B. Chen +14 more
20110 citations Open access
Semantic Scholar
Crystal structure of cAMP bound cGMP-dependent protein kinase(92-227)
J. J. Kim, G. Huang, T. Kwon, P. Zwart +2 more
20110 citations
Semantic Scholar
Analysis and error correction in structures of macromolecular interiors and interfaces
J. Headd
20090 citations
Semantic Scholar
assessment Authors:
D. Keedy, Christopher J. Williams, J. Headd, W. Arendall +7 more
20090 citations
Semantic Scholar
Lecture 20: Secondary Structure Prediction
P. Agarwal, J. Headd
20030 citations
Semantic Scholar

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