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D. Gally · SciRah

Researcher profile · Semantic Scholar

D. Gally

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D. Gally — researcher profile on SciRah

h-index: 48
Works: 179
Citations: 7,470

Most-cited papers

Bacterial Flagella: Twist and Stick, or Dodge across the Kingdoms
Yannick Rossez, E. Wolfson, Ashleigh Holmes, D. Gally +1 more
2015PLoS Pathogens190 citations Open access
Semantic Scholar
Small RNA interactome of pathogenic E. coli revealed through crosslinking of RNase E
Shafagh A. Waters, Sean P. McAteer, Grzegorz Kudla, Ignatius Pang +8 more
2016EMBO Journal169 citations Open access
Semantic Scholar
Elucidation of the RamA Regulon in Klebsiella pneumoniae Reveals a Role in LPS Regulation
Shyamasree De Majumdar, Jing Yu, M. Fookes, Sean P. McAteer +11 more
2015PLoS Pathogens146 citations Open access
Semantic Scholar
Predicting the public health benefit of vaccinating cattle against Escherichia coli O157
L. Matthews, R. Reeve, D. Gally, J. C. Low +9 more
2013Proceedings of the National Academy of Sciences of the United States of America124 citations Open access
Semantic Scholar
Applying phylogenomics to understand the emergence of Shiga-toxin-producing Escherichia coli O157:H7 strains causing severe human disease in the UK
T. Dallman, P. Ashton, L. Byrne, N. Perry +12 more
2015Microbial Genomics117 citations Open access
Semantic Scholar
Patchy promiscuity: machine learning applied to predict the host specificity of Salmonella enterica and Escherichia coli
Nadejda Lupolova, T. Dallman, N. Holden, D. Gally
2017Microbial Genomics77 citations Open access
Semantic Scholar
Prevalence and patterns of antimicrobial resistance among Escherichia coli isolated from Zambian dairy cattle across different production systems
Geoffrey Mainda, Paul B. Bessell, J. Muma, Sean P. McAteer +5 more
2015Scientific Reports69 citations Open access
Semantic Scholar
Multidrug-resistant Escherichia coli from canine urinary tract infections tend to have commensal phylotypes, lower prevalence of virulence determinants and ampC-replicons
S. Wagner, D. Gally, S. Argyle
2014Veterinary Microbiology69 citations Open access
Semantic Scholar
Support vector machine applied to predict the zoonotic potential of E. coli O157 cattle isolates
Nadejda Lupolova, T. Dallman, L. Matthews, J. Bono +1 more
2016Proceedings of the National Academy of Sciences of the United States of America61 citations Open access
Semantic Scholar
Site Specific Relationships between COVID-19 Cases and SARS-CoV-2 Viral Load in Wastewater Treatment Plant Influent
S. Fitzgerald, G. Rossi, A. Low, Sean P. McAteer +15 more
2021Environmental Science and Technology57 citations Open access
Semantic Scholar
The Metabolic Enzyme AdhE Controls the Virulence of Escherichia coli O157:H7
K. Beckham, James P. R. Connolly, J. Ritchie, Dai Wang +11 more
2014Molecular Microbiology56 citations Open access
Semantic Scholar
Shiga toxin sub-type 2a increases the efficiency of Escherichia coli O157 transmission between animals and restricts epithelial regeneration in bovine enteroids
S. Fitzgerald, A. E. Beckett, J. Palarea-Albaladejo, Sean P. McAteer +9 more
2019PLoS Pathogens55 citations Open access
Semantic Scholar
Resistance to change: AMR gene dynamics on a commercial pig farm with high antimicrobial usage
J. Pollock, A. Muwonge, M. Hutchings, Geoffrey Mainda +3 more
2020Scientific Reports52 citations Open access
Semantic Scholar
Flagella interact with ionic plant lipids to mediate adherence of pathogenic Escherichia coli to fresh produce plants.
Yannick Rossez, Ashleigh Holmes, E. Wolfson, D. Gally +5 more
2014Environmental Microbiology48 citations Open access
Semantic Scholar
Predictive phage therapy for Escherichia coli urinary tract infections: Cocktail selection for therapy based on machine learning models
Marianne Keith, Alba Park de la Torriente, A. Chalka, Adriana Vallejo-Trujillo +4 more
2023bioRxiv40 citations Open access
Semantic Scholar
A guide to machine learning for bacterial host attribution using genome sequence data
Nadejda Lupolova, S. Lycett, D. Gally
2019Microbial Genomics40 citations Open access
Semantic Scholar
Analysis of whole genome sequencing for the Escherichia coli O157:H7 typing phages
L. Cowley, Stephen J. Beckett, M. Chase-Topping, N. Perry +3 more
2015BMC Genomics39 citations Open access
Semantic Scholar
Short-term evolution of Shiga toxin-producing Escherichia coli O157:H7 between two food-borne outbreaks
L. Cowley, T. Dallman, S. Fitzgerald, N. Irvine +7 more
2016Microbial Genomics38 citations Open access
Semantic Scholar
Transposon Insertion Sequencing Elucidates Novel Gene Involvement in Susceptibility and Resistance to Phages T4 and T7 in Escherichia coli O157
L. Cowley, A. Low, D. Pickard, Christine J. Boinett +7 more
2018mBio37 citations Open access
Semantic Scholar
Strain-Dependent Cellular Immune Responses in Cattle following Escherichia coli O157:H7 Colonization
A. Corbishley, Nur Indah Ahmad, K. Hughes, M. Hutchings +5 more
2014Infection and Immunity35 citations Open access
Semantic Scholar
Changes in the Ileal, but Not Fecal, Microbiome in Response to Increased Dietary Protein Level and Enterotoxigenic Escherichia coli Exposure in Pigs
J. Pollock, M. Hutchings, Kate E. K. Hutchings, D. Gally +1 more
2019Applied and Environmental Microbiology34 citations Open access
Semantic Scholar
Comparison of Shiga toxin-encoding bacteriophages in highly pathogenic strains of Shiga toxin-producing Escherichia coli O157:H7 in the UK
D. Yara, David R. Greig, D. Gally, T. Dallman +1 more
2019bioRxiv34 citations Open access
Semantic Scholar
Analysis of temporal fecal microbiota dynamics in weaner pigs with and without exposure to enterotoxigenic Escherichia coli,
J. Pollock, D. Gally, L. Glendinning, Raksha Tiwari +2 more
2018Journal of Animal Science34 citations Open access
Semantic Scholar
Host species adaptation of TLR5 signalling and flagellin recognition
Amin Tahoun, Kirsty Jensen, Y. Corripio-Miyar, Sean P. McAteer +4 more
2017Scientific Reports33 citations Open access
Semantic Scholar
Review of methods for the detection of Lawsonia intracellularis infection in pigs
Marta Campillo, Sionagh H. Smith, D. Gally, T. Opriessnig
2021Journal of Veterinary Diagnostic Investigation29 citations Open access
Semantic Scholar
British Escherichia coli O157 in Cattle Study (BECS): to determine the prevalence of E. coli O157 in herds with cattle destined for the food chain
M. Henry, S. Tongue, J. Evans, Claire L. Webster +8 more
2017Epidemiology and Infection29 citations Open access
Semantic Scholar
An RNA-dependent mechanism for transient expression of bacterial translocation filaments
Dai Wang, Sean P. McAteer, Agata B. Wawszczyk, C. Russell +7 more
2018Nucleic Acids Research27 citations Open access
Semantic Scholar
Alternate thermoregulation and functional binding of Escherichia coli type 1 fimbriae in environmental and animal isolates.
J. Marshall, Yannick Rossez, Geoffrey Mainda, D. Gally +2 more
2016FEMS Microbiology Letters25 citations Open access
Semantic Scholar
Ribosome maturation by the endoribonuclease YbeY stabilizes a type 3 secretion system transcript required for virulence of enterohemorrhagic Escherichia coli
Sean P. McAteer, Brandon M. Sy, J. Wong, D. Tollervey +2 more
2018Journal of Biological Chemistry24 citations Open access
Semantic Scholar
The interaction of Escherichia coli O157 :H7 and Salmonella Typhimurium flagella with host cell membranes and cytoskeletal components
E. Wolfson, Johanna Elvidge, Amin Tahoun, T. Gillespie +12 more
2020Microbiology21 citations Open access
Semantic Scholar
Functional analysis of bovine TLR5 and association with IgA responses of cattle following systemic immunisation with H7 flagella
Amin Tahoun, Kirsty Jensen, Y. Corripio-Miyar, Sean P. McAteer +9 more
2015Veterinary Research21 citations Open access
Semantic Scholar
Alternatives to antibiotics in a One Health context and the role genomics can play in reducing antimicrobial use.
J. Pollock, A. Low, Rebecca E. McHugh, A. Muwonge +3 more
2020Clinical Microbiology and Infection20 citations Open access
Semantic Scholar
Convergence of plasmid architectures drives emergence of multi-drug resistance in a clonally diverse Escherichia coli population from a veterinary clinical care setting
S. Wagner, Nadejda Lupolova, D. Gally, S. Argyle
2017Veterinary Microbiology20 citations Open access
Semantic Scholar
Microbe Profile: Escherichia coli O157 : H7 - notorious relative of the microbiologist's workhorse.
D. Gally, M. Stevens
2017Microbiology19 citations Open access
Semantic Scholar
Rapid metagenomic sequencing for diagnosis and antimicrobial sensitivity prediction of canine bacterial infections
Natalie Ring, A. Low, Bryan A. Wee, G. K. Paterson +4 more
2023bioRxiv16 citations Open access
Semantic Scholar
Identification of domestic reservoirs and common exposures in an emerging lineage of Shiga toxin-producing Escherichia coli O157:H7 in England: a genomic epidemiological analysis.
T. Dallman, K. Jalava, N. Verlander, D. Gally +3 more
2022The Lancet Microbe15 citations Open access
Semantic Scholar
High-Resolution, High-Throughput Analysis of Hfq-Binding Sites Using UV Crosslinking and Analysis of cDNA (CRAC).
Brandon M. Sy, J. Wong, Sander Granneman, D. Tollervey +2 more
2018Methods in molecular biology15 citations
Semantic Scholar
Phylogenomic approaches to determine the zoonotic potential of Shiga toxin-producing Escherichia coli (STEC) isolated from Zambian dairy cattle
Geoffrey Mainda, Nadejda Lupolova, Linda Sikakwa, Paul R. Bessell +15 more
2016Scientific Reports15 citations Open access
Semantic Scholar
Genome structural variation in Escherichia coli O157:H7
S. Fitzgerald, Nadejda Lupolova, Sharif Shaaban, T. Dallman +8 more
2021Microbial Genomics14 citations Open access
Semantic Scholar
Temporal and nutritional effects on the weaner pig ileal microbiota
J. Pollock, L. Glendinning, L. Smith, Hamna Mohsin +3 more
2021Animal Microbiome13 citations Open access
Semantic Scholar
Identification of epitopes recognised by mucosal CD4+ T-cell populations from cattle experimentally colonised with Escherichia coli O157:H7
A. Corbishley, T. Connelley, E. Wolfson, K. Ballingall +3 more
2016Veterinary Research13 citations Open access
Semantic Scholar
Type III Secretion-Dependent Sensitivity of Escherichia coli O157 to Specific Ketolides
R. Fernandez-Brando, Nao Yamaguchi, Amin Tahoun, Sean P. McAteer +5 more
2015Antimicrobial Agents and Chemotherapy13 citations Open access
Semantic Scholar
Antimicrobial susceptibility and genomic profiling of Salmonella enterica from bloodstream infections at a tertiary referral hospital in Lusaka, Zambia, 2018–2019
K. Yamba, Christine Kapesa, E. Mpabalwani, L. Hachaambwa +9 more
2022IJID Regions12 citations Open access
Semantic Scholar
Whole Genome Sequence Analysis Reveals Lower Diversity and Frequency of Acquired Antimicrobial Resistance (AMR) Genes in E. coli From Dairy Herds Compared With Human Isolates From the Same Region of Central Zambia
Geoffrey Mainda, Nadejda Lupolova, Linda Sikakwa, Emily J. Richardson +7 more
2019Frontiers in Microbiology12 citations Open access
Semantic Scholar
Identification and Characterization of Novel Compounds Blocking Shiga Toxin Expression in Escherichia coli O157:H7
Alejandro Huerta-Uribe, Z. Marjenberg, Nao Yamaguchi, S. Fitzgerald +9 more
2016Frontiers in Microbiology12 citations Open access
Semantic Scholar
Faecal carriage of ESBL producing and colistin resistant Escherichia coli in avian species over a 2-year period (2017-2019) in Zimbabwe
F. T. Takawira, J. Pitout, Gaëtan J. A. Thilliez, T. Mashe +12 more
2022Frontiers in Cellular and Infection Microbiology11 citations Open access
Semantic Scholar
The advantage of intergenic regions as genomic features for machine-learning-based host attribution of Salmonella Typhimurium from the USA
A. Chalka, Tim J. Dallman, P. Vohra, M. P. Stevens +1 more
2023Microbial Genomics9 citations Open access
Semantic Scholar
Applying phylogenomics to understand the emergence of Shiga Toxin producing Escherichia coli O157:H7 strains causing severe human disease in the United Kingdom
T. Dallman, P. Ashton, L. Byrne, N. Perry +12 more
20159 citations
Semantic Scholar
Erratum: Prevalence and patterns of antimicrobial resistance among Escherichia coli isolated from Zambian dairy cattle across different production systems
Geoffrey Mainda, Paul R. Bessell, J. Muma, Sean P. McAteer +5 more
2015Scientific Reports9 citations Open access
Semantic Scholar
Prevalence of Shiga Toxin-Producing Escherichia coli O157 in Wild Scottish Deer with High Human Pathogenic Potential
S. Fitzgerald, M. Mitchell, A. Holmes, L. Allison +5 more
2023Animals7 citations Open access
Semantic Scholar

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