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Sander Granneman · SciRah

Researcher profile · Semantic Scholar

Sander Granneman

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Sander Granneman — researcher profile on SciRah

h-index: 40
Works: 90
Citations: 5,711

Most-cited papers

Identification of protein binding sites on U3 snoRNA and pre-rRNA by UV cross-linking and high-throughput analysis of cDNAs
Sander Granneman, Grzegorz Kudla, E. Petfalski, D. Tollervey
2009Proceedings of the National Academy of Sciences of the United States of America363 citations Open access
Semantic Scholar
Cross-linking, ligation, and sequencing of hybrids reveals RNA–RNA interactions in yeast
Grzegorz Kudla, Sander Granneman, D. Hahn, J. Beggs +1 more
2011Proceedings of the National Academy of Sciences of the United States of America314 citations Open access
Semantic Scholar
The apoptosis-promoting factor TIA-1 is a regulator of alternative pre-mRNA splicing.
Patrik Förch, O. Puig, N. Kedersha, Concepción Martínez +4 more
2000Molecules and Cells298 citations Open access
Semantic Scholar
Ribosome biogenesis: of knobs and RNA processing.
Sander Granneman, S. Baserga
2004Experimental Cell Research261 citations
Semantic Scholar
RNA polymerase I transcription and pre-rRNA processing are linked by specific SSU processome components.
Jennifer E. G. Gallagher, D. A. Dunbar, Sander Granneman, Brianna M. Mitchell +3 more
2004Genes & Development249 citations Open access
Semantic Scholar
Purification of cross-linked RNA-protein complexes by phenol-toluol extraction
E. C. Urdaneta, Carlos H. Vieira-Vieira, T. Hick, H. Wessels +7 more
2018Nature Communications213 citations Open access
Semantic Scholar
The nuclear RNA polymerase II surveillance system targets polymerase III transcripts
Wiebke Wlotzka, Grzegorz Kudla, Sander Granneman, D. Tollervey
2011EMBO Journal188 citations Open access
Semantic Scholar
Proof reading of pre-40S ribosome maturation by a translation initiation factor and 60S subunits
S. Lebaron, C. Schneider, R. van Nues, Agata Świątkowska +5 more
2012Nature Structural &Molecular Biology181 citations Open access
Semantic Scholar
A cluster of ribosome synthesis factors regulate pre-rRNA folding and 5.8S rRNA maturation by the Rat1 exonuclease
Sander Granneman, E. Petfalski, D. Tollervey
2011EMBO Journal181 citations Open access
Semantic Scholar
PAR-CLIP data indicate that Nrd1-Nab3-dependent transcription termination regulates expression of hundreds of protein coding genes in yeast
Shaun Webb, R. D. Hector, Grzegorz Kudla, Sander Granneman
2014Genome Biology177 citations Open access
Semantic Scholar
The Small-Subunit Processome Is a Ribosome Assembly Intermediate
Kara A. Bernstein, Jennifer E. G. Gallagher, Brianna M. Mitchell, Sander Granneman +1 more
2004Eukaryotic Cell177 citations Open access
Semantic Scholar
Prp43 Bound at Different Sites on the Pre-rRNA Performs Distinct Functions in Ribosome Synthesis
M. Bohnsack, Roman Martin, Sander Granneman, Maike Ruprecht +2 more
2009Molecules and Cells175 citations Open access
Semantic Scholar
RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination
Nila Roy Choudhury, Gregory Heikel, M. Trubitsyna, P. Kubík +7 more
2017bioRxiv165 citations Open access
Semantic Scholar
Coupled GTPase and remodeling ATPase activities form a checkpoint for ribosome export
Y. Matsuo, Sander Granneman, M. Thoms, Rizos-Georgios Manikas +2 more
2013Nature149 citations Open access
Semantic Scholar
Cracking pre-40S ribosomal subunit structure by systematic analyses of RNA–protein cross-linking
Sander Granneman, E. Petfalski, Agata Świątkowska, D. Tollervey
2010EMBO Journal128 citations Open access
Semantic Scholar
Crosstalk in gene expression: coupling and co-regulation of rDNA transcription, pre-ribosome assembly and pre-rRNA processing.
Sander Granneman, S. Baserga
2005Current Opinion in Cell Biology127 citations
Semantic Scholar
Specialized box C/D snoRNPs act as antisense guides to target RNA base acetylation
Sunny Sharma, Jun Yang, R. van Nues, Peter Watzinger +4 more
2017PLoS Genetics115 citations Open access
Semantic Scholar
The PINc domain protein Utp24, a putative nuclease, is required for the early cleavage steps in 18S rRNA maturation.
F. Bleichert, Sander Granneman, Y. Osheim, A. Beyer +1 more
2006Proceedings of the National Academy of Sciences of the United States of America102 citations Open access
Semantic Scholar
The Putative NTPase Fap7 Mediates Cytoplasmic 20S Pre-rRNA Processing through a Direct Interaction with Rps14
Sander Granneman, M. R. Nandineni, S. Baserga
2005Molecular and Cellular Biology100 citations Open access
Semantic Scholar
Snapshots of pre-rRNA structural flexibility reveal eukaryotic 40S assembly dynamics at nucleotide resolution
R. D. Hector, E. Burlacu, Stuart Aitken, T. Le Bihan +4 more
2014Nucleic Acids Research94 citations Open access
Semantic Scholar
Rio1 mediates ATP-dependent final maturation of 40S ribosomal subunits
T. Turowski, S. Lebaron, E. Zhang, L. Peil +5 more
2014Nucleic Acids Research94 citations Open access
Semantic Scholar
Hfq CLASH uncovers sRNA-target interaction networks linked to nutrient availability adaptation
I. Iosub, R. van Nues, S. McKellar, K. J. Nieken +5 more
2020eLife88 citations Open access
Semantic Scholar
Kinetic CRAC uncovers a role for Nab3 in determining gene expression profiles during stress
R. van Nues, G. Schweikert, Erica de Leau, Alina Selega +6 more
2017Nature Communications87 citations Open access
Semantic Scholar
The human Imp3 and Imp4 proteins form a ternary complex with hMpp10, which only interacts with the U3 snoRNA in 60-80S ribonucleoprotein complexes.
Sander Granneman, Jennifer E. G. Gallagher, J. Vogelzangs, Wendy Horstman +3 more
2003Nucleic Acids Research81 citations Open access
Semantic Scholar
Box C/D snoRNP catalysed methylation is aided by additional pre-rRNA base-pairing
R. van Nues, Sander Granneman, Grzegorz Kudla, K. Sloan +3 more
2011EMBO Journal80 citations Open access
Semantic Scholar
Rrp5 Binding at Multiple Sites Coordinates Pre-rRNA Processing and Assembly
S. Lebaron, Åsa Segerstolpe, S. French, T. Dudnakova +6 more
2013Molecules and Cells77 citations Open access
Semantic Scholar
The DEAH-box Helicase Dhr1 Dissociates U3 from the Pre-rRNA to Promote Formation of the Central Pseudoknot
Richa Sardana, Xin Liu, Sander Granneman, Jie-Yi Zhu +6 more
2015PLoS Biology75 citations Open access
Semantic Scholar
Comprehensive Mutational Analysis of Yeast DEXD/H Box RNA Helicases Involved in Large Ribosomal Subunit Biogenesis
Kara A. Bernstein, Sander Granneman, Alicia V. Lee, Swarnameenakshi Manickam +1 more
2006Molecular and Cellular Biology74 citations Open access
Semantic Scholar
Transcriptome-wide RNA processing kinetics revealed using extremely short 4tU labeling
J. Barrass, Jane A. E. Reid, Yuan-Hua Huang, R. D. Hector +3 more
2015Genome Biology72 citations Open access
Semantic Scholar
Regulation of mRNA Levels by Decay-Promoting Introns that Recruit the Exosome Specificity Factor Mmi1
Cornelia Kilchert, Sina Wittmann, Monica Passoni, Sneha Shah +2 more
2015Cell Reports69 citations Open access
Semantic Scholar
The nucleolar protein Esf2 interacts directly with the DExD/H box RNA helicase, Dbp8, to stimulate ATP hydrolysis
Sander Granneman, Chieyu Lin, E. A. Champion, M. R. Nandineni +2 more
2006Nucleic Acids Research68 citations Open access
Semantic Scholar
Identification of RNA helicase target sites by UV cross-linking and analysis of cDNA.
M. Bohnsack, D. Tollervey, Sander Granneman
2012Methods in Enzymology64 citations
Semantic Scholar
The roles of Rrp5p in the synthesis of yeast 18S and 5.8S rRNA can be functionally and physically separated.
N. A. Eppens, Sietske Rensen, Sander Granneman, H. A. Raué +1 more
1999RNA: A publication of the RNA Society63 citations Open access
Semantic Scholar
Comprehensive Mutational Analysis of Yeast DEXD/H Box RNA Helicases Required for Small Ribosomal Subunit Synthesis
Sander Granneman, Kara A. Bernstein, F. Bleichert, S. Baserga
2006Molecular and Cellular Biology62 citations Open access
Semantic Scholar
The Nrd1-like protein Seb1 coordinates cotranscriptional 3′ end processing and polyadenylation site selection
J. Lemay, S. Marguerat, Marc Larochelle, Xiaochuan Liu +7 more
2016Genes & Development59 citations Open access
Semantic Scholar
A network of assembly factors is involved in remodeling rRNA elements during preribosome maturation
J. Baßler, Helge Paternoga, I. Holdermann, M. Thoms +13 more
2014Journal of Cell Biology57 citations Open access
Semantic Scholar
Spliceosome-mediated decay (SMD) regulates expression of nonintronic genes in budding yeast
Adam Volanakis, Monica Passoni, R. D. Hector, Sneha Shah +3 more
2013Genes & Development49 citations Open access
Semantic Scholar
Role of Pre-rRNA Base Pairing and 80S Complex Formation in Subnucleolar Localization of the U3 snoRNP
Sander Granneman, J. Vogelzangs, R. Lührmann, W. V. van Venrooij +2 more
2004Molecular and Cellular Biology46 citations Open access
Semantic Scholar
The hU3-55K Protein Requires 15.5K Binding to the Box B/C Motif as Well as Flanking RNA Elements for Its Association with the U3 Small Nucleolar RNA in Vitro *
Sander Granneman, G. Pruijn, Wendy Horstman, W. V. van Venrooij +2 more
2002Journal of Biological Chemistry46 citations Open access
Semantic Scholar
Interaction of the U3-55k protein with U3 snoRNA is mediated by the box B/C motif of U3 and the WD repeats of U3-55k.
Andrew A. Lukowiak, Sander Granneman, S. Mattox, Wayne A. Speckmann +5 more
2000Nucleic Acids Research46 citations Open access
Semantic Scholar
The role of RNA‐binding proteins in mediating adaptive responses in Gram‐positive bacteria
Niki Christopoulou, Sander Granneman
2021The FEBS Journal40 citations Open access
Semantic Scholar
High-throughput RNA structure probing reveals critical folding events during early 60S ribosome assembly in yeast
E. Burlacu, Fredrik Lackmann, L. Aguilar, S. Belikov +8 more
2017Nature Communications40 citations Open access
Semantic Scholar
Building ribosomes: even more expensive than expected?
Sander Granneman, D. Tollervey
2007Current Biology40 citations Open access
Semantic Scholar
RNase III CLASH in MRSA uncovers sRNA regulatory networks coupling metabolism to toxin expression
S. McKellar, I. Ivanova, P. Arede, Rachel L. Zapf +12 more
2022Nature Communications38 citations Open access
Semantic Scholar
Cell populations can use aneuploidy to survive telomerase insufficiency
C. Millet, Darya Ausiannikava, T. Le Bihan, Sander Granneman +1 more
2015Nature Communications35 citations Open access
Semantic Scholar
RNase III-CLASH of multi-drug resistant Staphylococcus aureus reveals a regulatory mRNA 3′UTR required for intermediate vancomycin resistance
Daniel G. Mediati, Julia L. Wong, Wei Gao, S. McKellar +11 more
2022Nature Communications34 citations Open access
Semantic Scholar
The RNA-bound proteome of MRSA reveals post-transcriptional roles for helix-turn-helix DNA-binding and Rossmann-fold proteins
Liang-Cui Chu, P. Arede, Wei Li, E. C. Urdaneta +7 more
2022Nature Communications31 citations Open access
Semantic Scholar
Robust statistical modeling improves sensitivity of high-throughput RNA structure probing experiments
Alina Selega, Christel Sirocchi, I. Iosub, Sander Granneman +1 more
2016Nature Methods28 citations Open access
Semantic Scholar
Loss of the Yeast SR Protein Npl3 Alters Gene Expression Due to Transcription Readthrough
R. K. Holmes, A. Tuck, Chenchen Zhu, H. Dunn-Davies +6 more
2015PLoS Genetics28 citations Open access
Semantic Scholar
An RNA-dependent mechanism for transient expression of bacterial translocation filaments
Dai Wang, Sean P. McAteer, Agata B. Wawszczyk, C. Russell +7 more
2018Nucleic Acids Research27 citations Open access
Semantic Scholar

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