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R. Ramaker · SciRah

Researcher profile · Semantic Scholar

R. Ramaker

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R. Ramaker — researcher profile on SciRah

h-index: 20
Works: 36
Citations: 1,183

Most-cited papers

Post-mortem molecular profiling of three psychiatric disorders
R. Ramaker, K. Bowling, Brittany N. Lasseigne, M. Hagenauer +16 more
2016Genome Medicine197 citations Open access
Semantic Scholar
Cancer cell proliferation is inhibited by specific modulation frequencies
J. Zimmerman, Michael J. Pennison, I. Brezovich, Nengjun Yi +8 more
2011British Journal of Cancer146 citations Open access
Semantic Scholar
Occupancy maps of 208 chromatin-associated proteins in one human cell type
E. Partridge, Surya B. Chhetri, J. Prokop, R. Ramaker +16 more
2020Nature127 citations Open access
Semantic Scholar
RNA sequencing of pancreatic adenocarcinoma tumors yields novel expression patterns associated with long‐term survival and reveals a role for ANGPTL4
Marie K. Kirby, R. Ramaker, J. Gertz, Nicholas S. Davis +12 more
2016Molecular Oncology94 citations Open access
Semantic Scholar
Genomic regulation of invasion by STAT3 in triple negative breast cancer
Joy M. McDaniel, K. Varley, J. Gertz, Daniel Savic +18 more
2016OncoTarget67 citations Open access
Semantic Scholar
Long-read genome sequencing for the molecular diagnosis of neurodevelopmental disorders
S. Hiatt, James M. J. Lawlor, Lori H. Handley, R. Ramaker +13 more
2021HGG advances54 citations Open access
Semantic Scholar
Characterization of Coding/Noncoding Variants for SHROOM3 in Patients with CKD.
J. Prokop, N. Yeo, C. Ottmann, Surya B. Chhetri +17 more
2018Journal of the American Society of Nephrology53 citations Open access
Semantic Scholar
Genome-wide DNA methylation measurements in prostate tissues uncovers novel prostate cancer diagnostic biomarkers and transcription factor binding patterns
Marie K. Kirby, R. Ramaker, Brian S. Roberts, Brittany N. Lasseigne +8 more
2017BMC Cancer52 citations Open access
Semantic Scholar
Distinct gene regulatory programs define the inhibitory effects of liver X receptors and PPARG on cancer cell proliferation
Daniel Savic, R. Ramaker, Brian S. Roberts, Emma C. Dean +6 more
2016Genome Medicine42 citations Open access
Semantic Scholar
Differential stress induced c-Fos expression and identification of region-specific miRNA-mRNA networks in the dorsal raphe and amygdala of high-responder/low-responder rats
Joshua L. Cohen, Anooshah E. Ata, Nateka L. Jackson, E. Rahn +4 more
2016Behavioural Brain Research36 citations Open access
Semantic Scholar
RNA sequencing-based cell proliferation analysis across 19 cancers identifies a subset of proliferation-informative cancers with a common survival signature
R. Ramaker, Brittany N. Lasseigne, Andrew A. Hardigan, L. Palacio +4 more
2016bioRxiv34 citations Open access
Semantic Scholar
Pooled CRISPR screening in pancreatic cancer cells implicates co-repressor complexes as a cause of multiple drug resistance via regulation of epithelial-to-mesenchymal transition
R. Ramaker, Andrew A. Hardigan, Emily R. Gordon, Carter A. Wright +2 more
2019bioRxiv31 citations Open access
Semantic Scholar
Identification and function of enhancers in the human genome.
Candice J. Coppola, R. Ramaker, E. Mendenhall
2016Human Molecular Genetics31 citations
Semantic Scholar
Population‐Specific Patterns of Epigenetic Defects in the B Cell Lineage in Patients With Systemic Lupus Erythematosus
Megan E. Breitbach, R. Ramaker, Kevin Roberts, R. Kimberly +1 more
2019Arthritis & Rheumatology30 citations
Semantic Scholar
CRISPR/Cas9-targeted removal of unwanted sequences from small-RNA sequencing libraries
Andrew A. Hardigan, Brian S. Roberts, Dianna E. Moore, R. Ramaker +2 more
2018bioRxiv29 citations Open access
Semantic Scholar
De novo mutations in the GTP/GDP-binding region of RALA, a RAS-like small GTPase, cause intellectual disability and developmental delay
S. Hiatt, M. Neu, R. Ramaker, Andrew A. Hardigan +29 more
2018bioRxiv26 citations Open access
Semantic Scholar
Discovery and validation of circulating biomarkers of colorectal adenoma by high-depth small RNA sequencing
Brian S. Roberts, Andrew A. Hardigan, Dianna E. Moore, R. Ramaker +6 more
2018Clinical Cancer Research26 citations Open access
Semantic Scholar
aRNApipe: a balanced, efficient and distributed pipeline for processing RNA-seq data in high-performance computing environments
A. Alonso, Brittany N. Lasseigne, K. Williams, J. Nielsen +7 more
2016bioRxiv24 citations Open access
Semantic Scholar
Kinase Gene Expression Profiling of Metastatic Clear Cell Renal Cell Carcinoma Tissue Identifies Potential New Therapeutic Targets
P. Ghatalia, E. Yang, Brittany N. Lasseigne, R. Ramaker +11 more
2016PLoS ONE24 citations Open access
Semantic Scholar
Dissecting the regulatory activity and sequence content of loci with exceptional numbers of transcription factor associations
R. Ramaker, Andrew A. Hardigan, Say-Tar Goh, E. Partridge +3 more
2019bioRxiv23 citations Open access
Semantic Scholar
A genome-wide interactome of DNA-associated proteins in the human liver
R. Ramaker, Daniel Savic, Andrew A. Hardigan, Kimberly M. Newberry +3 more
2017bioRxiv11 citations Open access
Semantic Scholar
Long-read genome sequencing for the diagnosis of neurodevelopmental disorders
S. Hiatt, James M. J. Lawlor, Lori H. Handley, R. Ramaker +13 more
2020bioRxiv10 citations Open access
Semantic Scholar
R2DGC: Threshold-free peak alignment and identification for 2D gas chromatography mass spectrometry in R
R. Ramaker, Emily R. Gordon, S. Cooper
2017bioRxiv9 citations Open access
Semantic Scholar
Reduced sister chromatid cohesion acts as a tumor penetrance modifier
Jun Wang, Holly R Thomas, Yu Chen, Stefanie M. Percival +6 more
2022PLoS Genetics5 citations Open access
Semantic Scholar
Cardiovascular Disease Pathogenicity Predictor (CVD-PP): A Tissue-Specific In Silico Tool for Discriminating Pathogenicity of Variants of Unknown Significance in Cardiovascular Disease Genes
M. Ramaker, Jawan W. Abdulrahim, K. Corey, R. Ramaker +3 more
2024Circulation Genomic and Precision Medicine3 citations
Semantic Scholar
Systems biology R 2 DGC : Threshold-free peak alignment and identification for 2 D gas chromatography mass spectrometry in R
R. Ramaker, Emily R. Gordon, S. Cooper
20172 citations
Semantic Scholar
Pooled CRISPR screening in pancreatic cancer cells implicates co-repressor complexes as a cause of multiple drug resistance via regulation of epithelial-to-mesenchymal transition
R. Ramaker, Andrew A. Hardigan, Emily R. Gordon, Carter A. Wright +2 more
2021BMC Cancer1 citations Open access
Semantic Scholar
P3.01.53 Germline EGFR Mutations Are Enriched in the Southeast United States and Associated With High Penetrance of Non-Small Cell Lung Cancer
J. O'Brien, R. Ramaker, L. Alder, J. Clarke
2025Journal of Thoracic Oncology0 citations Open access
Semantic Scholar
Comparing traditional versus total neoadjuvant chemotherapy for patients with localized pancreatic cancer.
Ethan S. Agritelley, Julia Button, Matthew Bao, E. Kanu +3 more
2025HPB0 citations
Semantic Scholar
Identification of an optimal circulating tumor DNA (ctDNA) shedding threshold to detect actionable driver mutations in colorectal and pancreatic adenocarcinoma.
B. Caughey, K. Umemoto, Michelle F. Green, M. Ikeda +16 more
2022Journal of Clinical Oncology0 citations
Semantic Scholar
Dissecting the regulatory activity and key sequence elements of loci with exceptional numbers of transcription factor associations
R. Ramaker, Andrew A. Hardigan, Say-Tar Goh, E. Partridge +3 more
20190 citations
Semantic Scholar
High-throughput identification of genes involved in single and multi-drug resistance in pancreatic cancer with pooled CRISPR screening
R. Ramaker, Andrew A. Hardigan, Emily R. Gordon, R. Myers +1 more
20190 citations Open access
Semantic Scholar
Abstract 5135: Genome-wide CRISPR-based screening reveals ABCG2 as a novel drug resistance gene in pancreatic cancer
R. Ramaker, Andrew A. Hardigan, Emily R. Gordon, R. Myers +1 more
2019Molecular and Cellular Biology / Genetics0 citations
Semantic Scholar
Human Angiopoietin-Like 4 C-Terminal Domain (cANGPTL4) with Palmitic Acid
C. Tarver, Q. Yuan, A. Singhal, R. Ramaker +2 more
20190 citations
Semantic Scholar
Human Angiopoietin-Like 4 C-Terminal Domain (cANGPTL4) with Glycerol
C. Tarver, Q. Yuan, A. Singhal, R. Ramaker +2 more
20190 citations
Semantic Scholar
Occupancy patterns of 208 DNA-associated proteins in a single human cell type
E. Partridge, Surya B. Chhetri, J. Prokop, R. Ramaker +15 more
2018bioRxiv0 citations Open access
Semantic Scholar

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