Skip to content

Home Search Authors Pakistan News Saved

SciRah

SciRah does not host or store research papers. Results come live from free, official scholarly APIs, and every paper links back to its original source.

Data sources

OpenAlex
Semantic Scholar
Crossref
CORE
arXiv
PubMed

Privacy policy Terms of service

M. Farhat · SciRah

Researcher profile · Semantic Scholar

M. Farhat

Share profile

M. Farhat — researcher profile on SciRah

h-index: 37
Works: 174
Citations: 6,982

Most-cited papers

The 2021 WHO catalogue of Mycobacterium tuberculosis complex mutations associated with drug resistance: A genotypic analysis
T. Walker, P. Miotto, C. Köser, P. Fowler +20 more
2022The Lancet Microbe234 citations Open access
Semantic Scholar
Drug-resistant tuberculosis: a persistent global health concern
M. Farhat, H. Cox, Marwan Ghanem, C. Denkinger +7 more
2024Nature Reviews Microbiology227 citations
Semantic Scholar
Multimodal learning with graphs
Yasha Ektefaie, George Dasoulas, Ayush Noori, M. Farhat +1 more
2022Nature Machine Intelligence189 citations Open access
Semantic Scholar
COVID-19 bacteremic co-infection is a major risk factor for mortality, ICU admission, and mechanical ventilation
M. Patton, C. Orihuela, K. Harrod, M. A. N. Bhuiyan +12 more
2023Critical Care87 citations Open access
Semantic Scholar
Implications of Race Adjustment in Lung-Function Equations
James A. Diao, Yi-Xuan He, R. Khazanchi, Max Jordan Nguemeni Tiako +15 more
2024New England Journal of Medicine83 citations Open access
Semantic Scholar
Evaluating generalizability of artificial intelligence models for molecular datasets
Yasha Ektefaie, Andrew Shen, Daria Bykova, Maximillian G. Marin +2 more
2024bioRxiv71 citations Open access
Semantic Scholar
Clinical implications of molecular drug resistance testing for Mycobacterium tuberculosis: a 2023 TBnet/RESIST-TB consensus statement
J. Domínguez, M. Boeree, E. Cambau, D. Chesov +24 more
2023Lancet. Infectious Diseases (Print)71 citations Open access
Semantic Scholar
A convolutional neural network highlights mutations relevant to antimicrobial resistance in Mycobacterium tuberculosis
Anna G. Green, C. H. Yoon, Michael L. Chen, Yasha Ektefaie +6 more
2022Nature Communications71 citations Open access
Semantic Scholar
Benchmarking the empirical accuracy of short-read sequencing across the M. tuberculosis genome
Maximillian G. Marin, R. Vargas, Michael A. Harris, B. Jeffrey +10 more
2022Bioinform.69 citations Open access
Semantic Scholar
Role of Epistasis in Amikacin, Kanamycin, Bedaquiline, and Clofazimine Resistance in Mycobacterium tuberculosis Complex
R. Vargas, L. Freschi, A. Spitaleri, S. Tahseen +6 more
2021bioRxiv59 citations Open access
Semantic Scholar
In-host population dynamics of Mycobacterium tuberculosis complex during active disease
R. Vargas, L. Freschi, Maximillian G. Marin, L. E. Epperson +6 more
2021eLife53 citations Open access
Semantic Scholar
Globally diverse Mycobacterium tuberculosis resistance acquisition: a retrospective geographical and temporal analysis of whole genome sequences
Yasha Ektefaie, Avika Dixit, L. Freschi, M. Farhat
2021The Lancet Microbe48 citations Open access
Semantic Scholar
Exploring gene content with pangene graphs
Heng Li, Maximillian G. Marin, M. Farhat
2024Bioinform.35 citations Open access
Semantic Scholar
Phase variation as a major mechanism of adaptation in Mycobacterium tuberculosis complex
R. Vargas, Michael J. Luna, L. Freschi, Maximillian Marin +6 more
2023Proceedings of the National Academy of Sciences of the United States of America34 citations Open access
Semantic Scholar
Updating the approaches to define susceptibility and resistance to anti-tuberculosis agents: implications for diagnosis and treatment
Sophia B. Timothy C. Alexei Said H. Kanchan Jan-Willem Da Georghiou Rodwell Korobitsyn Abbadi Ajbani Alffena, Sophia B. Georghiou, T. Rodwell, A. Korobitsyn +124 more
2022European Respiratory Journal29 citations Open access
Semantic Scholar
Identification of bacterial determinants of tuberculosis infection and treatment outcomes: a phenogenomic analysis of clinical strains
Sydney Stanley, Caitlin N. Spaulding, Qingyun Liu, Mike Chase +18 more
2024The Lancet Microbe25 citations Open access
Semantic Scholar
Genomic Insights into Virulence Factors and Multi-Drug Resistance in Clostridium perfringens IRMC2505A
R. Aljindan, Doaa M Aleraky, M. Farhat, N. B. Almandil +2 more
2023Toxins23 citations Open access
Semantic Scholar
Measuring health-care delays among privately insured patients with tuberculosis in the USA: an observational cohort study
J. El Halabi, N. Palmer, Michael McDuffie, J. Golub +3 more
2021Lancet. Infectious Diseases (Print)23 citations
Semantic Scholar
Pitfalls of bacterial pan-genome analysis approaches: a case study of Mycobacterium tuberculosis and two less clonal bacterial species
Maximillian G. Marin, Natalia Quinones-Olvera, C. Wippel, M. Behruznia +9 more
2025Bioinform.22 citations Open access
Semantic Scholar
Differential rates of Mycobacterium tuberculosis transmission associate with host–pathogen sympatry
M. Gröschel, F. Pérez-Llanos, R. Diel, R. Vargas +14 more
2024Nature Microbiology20 citations
Semantic Scholar
The Mycobacterium tuberculosis complex pangenome is small and shaped by sub-lineage-specific regions of difference
M. Behruznia, Maximillian G. Marin, Daniel J. Whiley, M. Farhat +3 more
2025bioRxiv19 citations Open access
Semantic Scholar
Precision phenotyping for curating research cohorts of patients with unexplained post-acute sequelae of COVID-19
A. Azhir, Jonas Hügel, Jia-Zi Tian, Jing-Ya Cheng +14 more
2024i Medicina18 citations Open access
Semantic Scholar
Transcriptomic responses to antibiotic exposure in Mycobacterium tuberculosis
H. Poonawala, Yu Zhang, Sravya Kuchibhotla, Anna G. Green +5 more
2024Antimicrobial Agents and Chemotherapy18 citations Open access
Semantic Scholar
Genotype-Phenotype Characterization of Serial Mycobacterium tuberculosis Isolates in Bedaquiline-Resistant Tuberculosis.
T. Brown, Linrui Tang, S. Omar, L. Joseph +9 more
2023Clinical Infectious Diseases16 citations Open access
Semantic Scholar
Assessment and validation of enrichment and target capture approaches to improve Mycobacterium tuberculosis WGS from direct patient samples
B. C. Mann, K. R. Jacobson, Y. Ghebrekristos, R. Warren +1 more
2023bioRxiv15 citations Open access
Semantic Scholar
High Throughput Sequencing for Clinical Tuberculosis: An Overview
T. Ness, A. DiNardo, M. Farhat
2022Pathogens15 citations Open access
Semantic Scholar
A composite reference standard is needed for bedaquiline antimicrobial susceptibility testing for Mycobacterium tuberculosis complex
C. Köser, P. Miotto, N. Ismail, R. Anthony +12 more
2024European Respiratory Journal14 citations Open access
Semantic Scholar
Rethinking global digital health and AI-for-health innovation challenges
A. Farlow, A. Hoffmann, G. Tadesse, D. Mzurikwao +11 more
2023PLOS Global Public Health13 citations Open access
Semantic Scholar
The 2021 WHO Catalogue of Mycobacterium Tuberculosis Complex Mutations Associated with Drug Resistance: A New Global Standard for Molecular Diagnostics
T. Walker, P. Miotto, C. Köser, P. Fowler +22 more
2021Social Science Research Network13 citations Open access
Semantic Scholar
Frequently arising ESX-1-associated phase variants influence Mycobacterium tuberculosis fitness in the presence of host and antibiotic pressures
Michael J. Luna, P. Oluoch, J. Miao, Peter H. Culviner +7 more
2025mBio12 citations Open access
Semantic Scholar
Beyond diagnostic connectivity: Leveraging digital health technology for the real-time collection and provision of high-quality actionable data on infectious diseases in Uganda
Dennis Mujuni, Julius Tumwine, K. Musisi, Edward Otim +10 more
2024PLOS Digital Health12 citations Open access
Semantic Scholar
Analysis of Genome-Wide Mutational Dependence in Naturally Evolving Mycobacterium tuberculosis Populations
Anna G. Green, R. Vargas, Maximillian G. Marin, L. Freschi +2 more
2023Molecular biology and evolution12 citations Open access
Semantic Scholar
MmpR5 protein truncation and bedaquiline resistance in Mycobacterium tuberculosis isolates from South Africa: a genomic analysis.
Leah W. Roberts, Kerri M. Malone, M. Hunt, L. Joseph +6 more
2024The Lancet Microbe10 citations Open access
Semantic Scholar
Mutation rates and adaptive variation among the clinically dominant clusters of Mycobacterium abscessus
Nicoletta Commins, Mark R. Sullivan, Kerry McGowen, Evan M. Koch +2 more
2023bioRxiv10 citations Open access
Semantic Scholar
Smoked drug use in patients with TB is associated with higher bacterial burden
B. Myers, T. Carney, J. Rooney, S. Malatesta +12 more
2023The International Journal of Tuberculosis and Lung Disease10 citations Open access
Semantic Scholar
Mutation rates and adaptive variation among the clinically dominant clusters of Mycobacterium abscessus
Nicoletta Commins, Mark R. Sullivan, Kerry McGowen, Evan M. Koch +2 more
2023Proceedings of the National Academy of Sciences of the United States of America10 citations Open access
Semantic Scholar
Whole Genome Sequencing Assessing Impact of Diabetes Mellitus on Tuberculosis Mutations and Type of Recurrence in India.
V. Mave, Liang Chen, U. D. Ranganathan, D. Kadam +17 more
2022Clinical Infectious Diseases10 citations Open access
Semantic Scholar
Genomic sequence characteristics and the empiric accuracy of short-read sequencing
Maximillian G. Marin, R. Vargas, Michael A. Harris, B. Jeffrey +10 more
2021bioRxiv10 citations Open access
Semantic Scholar
Analysis of the limited M. tuberculosis accessory genome reveals potential pitfalls of pan-genome analysis approaches
Maximillian G. Marin, C. Wippel, Natalia Quinones-Olvera, M. Behruznia +9 more
2024bioRxiv9 citations Open access
Semantic Scholar
Optimizing DNA Extraction from Pediatric Stool for Diagnosis of Tuberculosis and Use in Next-Generation Sequencing Applications
Tara E. Ness, Lennard Meiwes, A. Kay, Rojelio Mejia +4 more
2022Microbiology spectrum9 citations Open access
Semantic Scholar
Study of the Side Effects of Pfizer and Oxford COVID-19 Vaccines in the Eastern Province of Saudi Arabia
M. Farhat, Rabab Al-Ibrahim, Abrar Almohammedali, Roaa Aljishi +1 more
2022International Journal of General Medicine9 citations Open access
Semantic Scholar
Multivariable regression models improve accuracy and sensitive grading of antibiotic resistance mutations in Mycobacterium tuberculosis
S. Kulkarni, S. Laurent, P. Miotto, T. M. Walker +5 more
2025Nature Communications8 citations Open access
Semantic Scholar
Estimation of country-specific tuberculosis resistance antibiograms using pathogen genomics and machine learning
Avika Dixit, L. Freschi, R. Vargas, M. Gröschel +9 more
2024BMJ Global Health8 citations Open access
Semantic Scholar
Addressing patients’ unmet needs related to multidrug-resistant tuberculosis (MDR-TB) care: A qualitative research study from Pune city, India
S. Atre, J. Jagtap, M. Faqih, Y. Dumbare +3 more
2023PLoS ONE8 citations Open access
Semantic Scholar
Is Ignorance Bliss? The Role of Post Hoc Explanation Faithfulness and Alignment in Model Trust in Laypeople and Domain Experts
Tessa Han, Yasha Ektefaie, M. Farhat, M. Zitnik +1 more
20238 citations
Semantic Scholar
Convolutional neural networks quantify antibiotic resistance in Mycobacterium tuberculosis with diagnostic grade accuracy and predict treatment response
S. Kulkarni, A. G. Green, B. C. Mann, S. Malatesta +8 more
2025medRxiv7 citations Open access
Semantic Scholar
Drug resistance and epidemiological success of modern Mycobacterium tuberculosis lineages in western India.
Avika Dixit, Yasha Ektefaie, A. Kagal, L. Freschi +15 more
2024Journal of Infectious Diseases7 citations Open access
Semantic Scholar
Self-Supervised Pretraining Enables High-Performance Chest X-Ray Interpretation Across Clinical Distributions
Niveditha S. Iyer, Aditya Gulati, Oishi Banerjee, Cécile Logé +3 more
2022medRxiv6 citations Open access
Semantic Scholar
Systematic review and meta-analysis of protocols and yield of direct from sputum sequencing of Mycobacterium tuberculosis
B. C. Mann, J. Loubser, S. Omar, C. Glanz +4 more
2024bioRxiv5 citations Open access
Semantic Scholar
Repeated evolution of bedaquiline resistance in Mycobacterium tuberculosis is driven by truncation of mmpR5
L. Roberts, Kerri M. Malone, M. Hunt, L. Joseph +6 more
2022bioRxiv5 citations Open access
Semantic Scholar

Frequent co-authors

Invite them to SciRah by sharing their profile.

R. Vargas×9
Invite
R. Vargas — researcher profile on SciRah
P. Miotto×8
Invite
P. Miotto — researcher profile on SciRah
S. Omar×7
Invite
S. Omar — researcher profile on SciRah
Yasha Ektefaie×6
Invite
Yasha Ektefaie — researcher profile on SciRah

Maximillian G. Marin

×6

Invite

Maximillian G. Marin — researcher profile on SciRah

Invite

L. Freschi — researcher profile on SciRah

Invite

C. Köser — researcher profile on SciRah

Invite

Z. Iqbal — researcher profile on SciRah

M. Gröschel×5

Invite

M. Gröschel — researcher profile on SciRah

Invite

B. C. Mann — researcher profile on SciRah

Invite

Jeff Knaggs — researcher profile on SciRah

Maximillian G. Marin×4

Invite

Maximillian G. Marin — researcher profile on SciRah