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H. V. D. van den Toorn · SciRah

Researcher profile · Semantic Scholar

H. V. D. van den Toorn

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H. V. D. van den Toorn — researcher profile on SciRah

h-index: 24
Works: 47
Citations: 1,853

Most-cited papers

Toward full peptide sequence coverage by dual fragmentation combining electron-transfer and higher-energy collision dissociation tandem mass spectrometry.
Christian K. Frese, A. M. Maarten Altelaar, H. V. D. van den Toorn, Dirk Nolting +3 more
2012Analytical Chemistry270 citations Open access
Semantic Scholar
Comparative Phosphoproteomic Analysis of Checkpoint Recovery Identifies New Regulators of the DNA Damage Response
Vincentius A. Halim, Mónica Álvarez-Fernández, Yan-Juan Xu, Melinda Aprelia +4 more
2013Science Signaling142 citations
Semantic Scholar
Personalized Proteome Profiles of Healthy and Tumor Human Colon Organoids Reveal Both Individual Diversity and Basic Features of Colorectal Cancer.
Alba Cristobal, H. V. D. van den Toorn, M. L. Van De Wetering, H. Clevers +2 more
2017Cell Reports137 citations Open access
Semantic Scholar
The PRoteomics IDEntification (PRIDE) Converter 2 Framework: An Improved Suite of Tools to Facilitate Data Submission to the PRIDE Database and the ProteomeXchange Consortium
R. Côté, J. Griss, José A. Dianes, Rui Wang +13 more
2012Molecular & Cellular Proteomics119 citations Open access
Semantic Scholar
Toward an Optimized Workflow for Middle-Down Proteomics
Alba Cristobal, F. Marino, Harm Post, H. V. D. van den Toorn +2 more
2017Analytical Chemistry110 citations Open access
Semantic Scholar
An Augmented Multiple-Protease-Based Human Phosphopeptide Atlas.
P. Giansanti, T. Aye, H. V. D. van den Toorn, M. Peng +2 more
2015Cell Reports97 citations Open access
Semantic Scholar
University of Groningen Quantitative and Qualitative Proteome Characteristics Extracted from In-Depth Integrated Genomics and Proteomics Analysis
T. Low, S. van Heesch, H. V. D. van den Toorn, P. Giansanti +9 more
201879 citations
Semantic Scholar
A serum proteome signature to predict mortality in severe COVID-19 patients
Franziska Völlmy, H. V. D. van den Toorn, Riccardo Zenezini Chiozzi, O. Zucchetti +14 more
2021Life Science Alliance76 citations Open access
Semantic Scholar
Single-cell derived tumor organoids display diversity in HLA class I peptide presentation
Laura C Demmers, K. Kretzschmar, A. van Hoeck, Yotam E. Bar-Epraïm +10 more
2020Nature Communications63 citations Open access
Semantic Scholar
Deep proteome profiling of Trichoplax adhaerens reveals remarkable features at the origin of metazoan multicellularity
J. Ringrose, H. V. D. van den Toorn, M. Eitel, Harm Post +4 more
2013Nature Communications60 citations Open access
Semantic Scholar
qcML: An Exchange Format for Quality Control Metrics from Mass Spectrometry Experiments
Mathias Walzer, Lucia Espona Pernas, S. Nasso, Wout Bittremieux +25 more
2014Molecular & Cellular Proteomics49 citations Open access
Semantic Scholar
Ultra acidic strong cation exchange enabling the efficient enrichment of basic phosphopeptides.
M. Hennrich, H. V. D. van den Toorn, V. Groenewold, A. Heck +1 more
2012Analytical Chemistry47 citations Open access
Semantic Scholar
Characterization of biases in phosphopeptide enrichment by Ti(4+)-immobilized metal affinity chromatography and TiO2 using a massive synthetic library and human cell digests.
L. Mathéron, H. V. D. van den Toorn, A. Heck, S. Mohammed
2014Analytical Chemistry45 citations Open access
Semantic Scholar
Effect of chemical modifications on peptide fragmentation behavior upon electron transfer induced dissociation.
M. Hennrich, P. Boersema, H. V. D. van den Toorn, N. Mischerikow +2 more
2009Analytical Chemistry45 citations
Semantic Scholar
Selectivity in Enrichment of cAMP-dependent Protein Kinase Regulatory Subunits Type I and Type II and Their Interactors Using Modified cAMP Affinity Resins*S
T. Aye, S. Mohammed, H. V. D. van den Toorn, T. V. van Veen +3 more
2009Molecular & Cellular Proteomics45 citations Open access
Semantic Scholar
Discovery and Quantification of Nonhuman Proteins in Human Milk
Jing Zhu, Luc B Garrigues, H. V. D. van den Toorn, B. Stahl +1 more
2018Journal of Proteome Research43 citations Open access
Semantic Scholar
StatQuant: a post-quantification analysis toolbox for improving quantitative mass spectrometry
B. van Breukelen, H. V. D. van den Toorn, Mădălina M. Drugan, A. Heck
2009Bioinform.37 citations Open access
Semantic Scholar
Monitoring Human Milk β-Casein Phosphorylation and O-Glycosylation Over Lactation Reveals Distinct Differences between the Proteome and Endogenous Peptidome
K. Dingess, I. Gazi, H. V. D. van den Toorn, M. Mank +3 more
2021International Journal of Molecular Sciences34 citations Open access
Semantic Scholar
RockerBox: analysis and filtering of massive proteomics search results.
H. V. D. van den Toorn, J. Muñoz, S. Mohammed, Reinout Raijmakers +2 more
2011Journal of Proteome Research30 citations
Semantic Scholar
Toward an efficient workflow for the analysis of the human milk peptidome
K. Dingess, H. V. D. van den Toorn, M. Mank, B. Stahl +1 more
2019Analytical and Bioanalytical Chemistry29 citations Open access
Semantic Scholar
Benefits of Collisional Cross Section Assisted Precursor Selection (caps-PASEF) for Cross-linking Mass Spectrometry
B. Steigenberger, H. V. D. van den Toorn, Emiel Bijl, Jean-François Greisch +5 more
2020bioRxiv26 citations Open access
Semantic Scholar
Opposite Electron-Transfer Dissociation and Higher-Energy Collisional Dissociation Fragmentation Characteristics of Proteolytic K/R(X)n and (X)nK/R Peptides Provide Benefits for Peptide Sequencing in Proteomics and Phosphoproteomics.
L. Tsiatsiani, P. Giansanti, Richard A. Scheltema, H. V. D. van den Toorn +3 more
2017Journal of Proteome Research26 citations Open access
Semantic Scholar
A cyclin-dependent kinase-mediated phosphorylation switch of disordered protein condensation
Juan Manuel Valverde, G. Dubra, Michael Phillips, Austin Haider +19 more
2023Nature Communications25 citations Open access
Semantic Scholar
Gaining Confidence in the Elusive Histidine Phosphoproteome
Clément M Potel, Miao-Hsia Lin, Nadine Prust, H. V. D. van den Toorn +2 more
2019Analytical Chemistry24 citations Open access
Semantic Scholar
Quantitative and qualitative proteome characteristics extracted from in-depth integrated genomics and proteomics analysis.
T. Low, S. van Heesch, H. V. D. van den Toorn, P. Giansanti +9 more
2013Cell Reports22 citations Open access
Semantic Scholar
Deep proteome profiling of circulating granulocytes reveals bactericidal/permeability-increasing protein as a biomarker for severe atherosclerotic coronary stenosis.
O. B. Bleijerveld, P. Wijten, Salvatore Cappadona, E. Mcclellan +12 more
2012Journal of Proteome Research21 citations
Semantic Scholar
In depth characterization of the Staphylococcus aureus phosphoproteome reveals new targets of Stk1.
Nadine Prust, Saar A. M. van der Laarse, H. V. D. van den Toorn, N. V. van Sorge +1 more
2020Molecular & Cellular Proteomics20 citations Open access
Semantic Scholar
Targeted SCX Based Peptide Fractionation for Optimal Sequencing by Collision Induced, and Electron Transfer Dissociation
H. V. D. van den Toorn, S. Mohammed, J. Gouw, B. van Breukelen +1 more
200819 citations
Semantic Scholar
The Early Metazoan Trichoplax adhaerens Possesses a Functional O-GlcNAc System
N. Selvan, D. Mariappa, H. V. D. van den Toorn, A. Heck +2 more
2015Journal of Biological Chemistry17 citations Open access
Semantic Scholar
Unravelling the Neospora caninum secretome through the secreted fraction (ESA) and quantification of the discharged tachyzoite using high-resolution mass spectrometry-based proteomics
Leticia Pollo-Oliveira, Harm Post, M. Acencio, N. Lemke +5 more
2013Parasites & Vectors17 citations Open access
Semantic Scholar
Cross-ID: Analysis and Visualization of Complex XL–MS-Driven Protein Interaction Networks
Sebastiaan C de Graaf, O. Klykov, H. V. D. van den Toorn, Richard A. Scheltema
2018Journal of Proteome Research16 citations Open access
Semantic Scholar
PaDuA: A Python Library for High-Throughput (Phospho)proteomics Data Analysis
Anna Ressa, M. Fitzpatrick, H. V. D. van den Toorn, A. Heck +1 more
2018Journal of Proteome Research16 citations Open access
Semantic Scholar
Benefits of Collisional Cross Section Assisted Precursor Selection (caps-PASEF) for Cross-linking Mass Spectrometry
B. Steigenberger, H. V. D. van den Toorn, Emiel Bijl, Jean-François Greisch +5 more
2020Molecular & Cellular Proteomics14 citations Open access
Semantic Scholar
Longitudinal Fluctuations in Protein Concentrations and Higher-Order Structures in the Plasma Proteome of Kidney Failure Patients Subjected to a Kidney Transplant
Sofia Kalaidopoulou Nteak, Franziska Völlmy, M. V. Lukassen, H. V. D. van den Toorn +7 more
2024bioRxiv9 citations Open access
Semantic Scholar
Root genomics: towards digital in situ hybridization
B. Scheres, H. V. D. van den Toorn, R. Heidstra
2004Genome Biology8 citations Open access
Semantic Scholar
Spatial Organization of the Sperm Cell Glycoproteome
R. Ji, R. Chiozzi, H. V. D. van den Toorn, M. Leung +5 more
2024Molecular & Cellular Proteomics4 citations Open access
Semantic Scholar
In-Depth Characterization of the Staphylococcus aureus Phosphoproteome Reveals New Targets of Stk1
Nadine Prust, Saar van der Laarse, H. V. D. van den Toorn, N. V. van Sorge +1 more
2021Molecular & Cellular Proteomics4 citations Open access
Semantic Scholar
Is there a serum proteome signature to predict mortality in severe COVID-19 patients?
Franziska Völlmy, H. V. D. van den Toorn, R. Chiozzi, O. Zucchetti +10 more
2021medRxiv4 citations Open access
Semantic Scholar
Single-embryo phosphoproteomics reveals the importance of intrinsic disorder in cell cycle dynamics
J. Valverde, G. Dubra, H. V. D. van den Toorn, G. van Mierlo +6 more
2021bioRxiv3 citations Open access
Semantic Scholar
Quantitative Proteomics for Differential Protein Expression Profiling
C. Frese, H. V. D. van den Toorn, A. Heck, S. Mohammed
2019Proteomics for Biological Discovery3 citations
Semantic Scholar
Immunoglobulin sub-class levels define inter-donor plasma variability: a longitudinal dual-lab study
S. Michalik, Sofia Kalaidopoulou Nteak, N. Drouin, Manuela Gesell Salazar +9 more
2025bioRxiv2 citations Open access
Semantic Scholar
Protein Language Model Decoys for Target Decoy Competition in Proteomics: Quality Assessment and Benchmarks
Grigory Reznikov, Fabrice Kusters, Majid Mohammadi, H. V. D. van den Toorn +1 more
2026bioRxiv0 citations Open access
Semantic Scholar
Opposite ETD/HCD fragmentation characteristics of proteolytic K/R(X) n and (X) n K/R peptides provide benefits for peptide sequencing in proteomics and phosphoproteomics
L. Tsiatsiani, P. Giansanti, Richard A. Scheltema, H. V. D. van den Toorn +3 more
20200 citations
Semantic Scholar
Computational proteomics: from numbers to biology
H. V. D. van den Toorn
20170 citations
Semantic Scholar
The early metazoan Trichoplax adhaerens possesses a functional O -GlcNAc system
N. Selvan, D. Mariappa, H. V. D. van den Toorn, A. Heck +2 more
20150 citations
Semantic Scholar
metrics from mass spectrometry experiments
Mathias Walzer, Lucia Espona Pernas, S. Nasso, Wout Bittremieux +5 more
20140 citations
Semantic Scholar
Augmented Multiple-Protease-Based
P. Giansanti, Thin Thin, Aye, H. V. D. van den Toorn +3 more
0 citations
Semantic Scholar

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