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Hai-Xu Tang · SciRah

Researcher profile · Semantic Scholar

Hai-Xu Tang

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Hai-Xu Tang — researcher profile on SciRah

h-index: 50
Works: 179
Citations: 11K

Most-cited papers

ISEScan: automated identification of insertion sequence elements in prokaryotic genomes
Zhiqun Xie, Hai-Xu Tang
2017Bioinform.449 citations Open access
Semantic Scholar
Determinants of spontaneous mutation in the bacterium Escherichia coli as revealed by whole-genome sequencing
P. Foster, Heewook Lee, E. Popodi, Jesse P Townes +1 more
2015Proceedings of the National Academy of Sciences of the United States of America171 citations Open access
Semantic Scholar
A two-step process for epigenetic inheritance in Arabidopsis
T. Blevins, Frédéric Pontvianne, R. Cocklin, R. Podicheti +8 more
2014Molecules and Cells105 citations Open access
Semantic Scholar
Interlaboratory Study on Differential Analysis of Protein Glycosylation by Mass Spectrometry: The ABRF Glycoprotein Research Multi-Institutional Study 2012*
N. Leymarie, Paula J. Griffin, K. Jonscher, D. Kolarich +63 more
2013Molecular & Cellular Proteomics103 citations Open access
Semantic Scholar
Strand-biased cytosine deamination at the replication fork causes cytosine to thymine mutations in Escherichia coli
A. Bhagwat, Wei-Long Hao, Jesse P Townes, Heewook Lee +2 more
2016Proceedings of the National Academy of Sciences of the United States of America93 citations Open access
Semantic Scholar
Quantitative Glycomics Strategies*
Y. Mechref, Yun-Li Hu, Janie L. Desantos-Garcia, A. Hussein +1 more
2013Molecular & Cellular Proteomics91 citations Open access
Semantic Scholar
Computational framework for identification of intact glycopeptides in complex samples.
A. Mayampurath, Chuan-Yih Yu, Ehwang Song, J. Balan +2 more
2014Analytical Chemistry90 citations
Semantic Scholar
Insertion sequence-caused large-scale rearrangements in the genome of Escherichia coli
Heewook Lee, T. Doak, E. Popodi, P. Foster +1 more
2016Nucleic Acids Research89 citations Open access
Semantic Scholar
Integration of time-series meta-omics data reveals how microbial ecosystems respond to disturbance
Malte Herold, Susana Martínez Arbas, S. Narayanasamy, Abdul R Sheik +20 more
2020Nature Communications88 citations Open access
Semantic Scholar
On the Mutational Topology of the Bacterial Genome
P. Foster, Andrew J. Hanson, Heewook Lee, E. Popodi +1 more
2013G3: Genes, Genomes, Genetics74 citations Open access
Semantic Scholar
Full-Spectrum Prediction of Peptides Tandem Mass Spectra using Deep Neural Network
Kaiyuan Liu, Sujun Li, Lei Wang, Yuzhen Ye +1 more
2020Analytical Chemistry72 citations Open access
Semantic Scholar
Quantitative Measurement of Phosphoproteome Response to Osmotic Stress in Arabidopsis Based on Library-Assisted eXtracted Ion Chromatogram (LAXIC)*
Liang Xue, Pengcheng Wang, Lian-Shui Wang, Emily C Renzi +5 more
2013Molecular & Cellular Proteomics68 citations Open access
Semantic Scholar
A community assessment of privacy preserving techniques for human genomes
Xiao-Qian Jiang, Yongan Zhao, Xiao-Feng Wang, B. Malin +3 more
2014BMC Medical Informatics and Decision Making66 citations Open access
Semantic Scholar
Background Mutational Features of the Radiation-Resistant Bacterium Deinococcus radiodurans.
Hongan Long, Sibel Kucukyildirim, Way Sung, Emily Williams +5 more
2015Molecular biology and evolution64 citations Open access
Semantic Scholar
Roles of bacteriophages, plasmids and CRISPR immunity in microbial community dynamics revealed using time-series integrated meta-omics
Susana Martínez Arbas, S. Narayanasamy, Malte Herold, L. Lebrun +19 more
2020Nature Microbiology63 citations Open access
Semantic Scholar
Testosterone Affects Neural Gene Expression Differently in Male and Female Juncos: A Role for Hormones in Mediating Sexual Dimorphism and Conflict
M. Peterson, K. Rosvall, Jeong-Hyeon Choi, Charles Ziegenfus +3 more
2013PLoS ONE60 citations Open access
Semantic Scholar
CRISPR-Cas systems target a diverse collection of invasive mobile genetic elements in human microbiomes
Quan Zhang, Mina Rho, Hai-Xu Tang, T. Doak +1 more
2013Genome Biology59 citations Open access
Semantic Scholar
Adaptation of Escherichia coli to Long-Term Serial Passage in Complex Medium: Evidence of Parallel Evolution
Karin E. Kram, C. Geiger, W. Ismail, Heewook Lee +3 more
2017mSystems54 citations Open access
Semantic Scholar
Automated annotation and quantification of glycans using liquid chromatography-mass spectrometry
Chuan-Yih Yu, A. Mayampurath, Yun-Li Hu, Shi-Yue Zhou +2 more
2013Bioinform.47 citations Open access
Semantic Scholar
BuildSummary: using a group-based approach to improve the sensitivity of peptide/protein identification in shotgun proteomics.
Quan-Hu Sheng, J. Dai, Yibo Wu, Hai-Xu Tang +1 more
2012Journal of Proteome Research47 citations
Semantic Scholar
Glycoproteomics: Identifying the Glycosylation of Prostate Specific Antigen at Normal and High Isoelectric Points by LC–MS/MS
Ehwang Song, A. Mayampurath, Chuan-Yih Yu, Hai-Xu Tang +1 more
2014Journal of Proteome Research46 citations Open access
Semantic Scholar
A New Method for Stranded Whole Transcriptome RNA-seq
David F. B. Miller, P. Yan, A. Buechlein, Benjamin Rodriguez +16 more
2013Methods44 citations Open access
Semantic Scholar
Determinants of Base-Pair Substitution Patterns Revealed by Whole-Genome Sequencing of DNA Mismatch Repair Defective Escherichia coli
P. Foster, Brittany A. Niccum, E. Popodi, Jesse P Townes +3 more
2018Genetics43 citations Open access
Semantic Scholar
Utilizing de Bruijn graph of metagenome assembly for metatranscriptome analysis
Yuzhen Ye, Hai-Xu Tang
2015Bioinform.42 citations Open access
Semantic Scholar
Gene finding in metatranscriptomic sequences
W. Ismail, Yuzhen Ye, Hai-Xu Tang
2014BMC Bioinformatics41 citations Open access
Semantic Scholar
Label-free glycopeptide quantification for biomarker discovery in human sera.
A. Mayampurath, Ehwang Song, A. Mathur, Chuan-Yih Yu +3 more
2014Journal of Proteome Research41 citations
Semantic Scholar
A Graph-Centric Approach for Metagenome-Guided Peptide and Protein Identification in Metaproteomics
Hai-Xu Tang, Sujun Li, Yuzhen Ye
2016PLoS Comput. Biol.39 citations Open access
Semantic Scholar
Automated Annotation and Quantitation of Glycan by LC-ESI-MS analysis using MultiGlycan-ESI Computational Tool
Yun-Li Hu, Shi-Yue Zhou, Chuan-Yih Yu, Hai-Xu Tang +1 more
2015Rapid Communications in Mass Spectrometry38 citations Open access
Semantic Scholar
Regulation of triple-negative breast cancer cell metastasis by the tumor-suppressor liver kinase B1
L. Rhodes, Chandra R. Tate, Van T. Hoang, Hope E. Burks +10 more
2015Oncogenesis34 citations Open access
Semantic Scholar
Potential for sexual conflict assessed via testosterone-mediated transcriptional changes in liver and muscle of a songbird
M. Peterson, K. Rosvall, C. A. Taylor, Jacqueline Lopez +5 more
2014Journal of Experimental Biology33 citations Open access
Semantic Scholar
msCRUSH: Fast Tandem Mass Spectral Clustering Using Locality Sensitive Hashing.
Lei Wang, Sujun Li, Hai-Xu Tang
2018Journal of Proteome Research32 citations Open access
Semantic Scholar
Automated glycan sequencing from tandem mass spectra of N-linked glycopeptides
Chuan-Yih Yu, A. Mayampurath, Rui Zhu, Lauren G. Zacharias +4 more
2016Analytical Chemistry32 citations Open access
Semantic Scholar
The Symmetrical Wave Pattern of Base-Pair Substitution Rates across the Escherichia coli Chromosome Has Multiple Causes
Brittany A. Niccum, Heewook Lee, Wazim MohammedIsmail, Hai-Xu Tang +1 more
2019mBio29 citations Open access
Semantic Scholar
iDASH secure genome analysis competition 2017
Xiao-Feng Wang, Hai-Xu Tang, Shuang Wang, Xiao-Qian Jiang +5 more
2018BMC Medical Genomics29 citations Open access
Semantic Scholar
The Spectrum of Replication Errors in the Absence of Error Correction Assayed Across the Whole Genome of Escherichia coli
Brittany A. Niccum, Heewook Lee, Wazim MohammedIsmail, Hai-Xu Tang +1 more
2018Genetics29 citations Open access
Semantic Scholar
8-plex LC-MS/MS Analysis of Permethylated N-glycans Achieved by Using Stable Isotopic Iodomethane
Xue Dong, Wenjing Peng, Chuan-Yih Yu, Shi-Yue Zhou +3 more
2019Analytical Chemistry26 citations Open access
Semantic Scholar
MGEScan: a Galaxy-based system for identifying retrotransposons in genomes
Hyungro Lee, Min-Su Lee, W. Ismail, Mina Rho +3 more
2016Bioinform.26 citations
Semantic Scholar
Comprehensive Characterization of the Glycosylation Site of Human PSA Prompted by Missense Mutation using LC-MS/MS
Ehwang Song, Yun-Li Hu, A. Hussein, Chuan-Yih Yu +2 more
2015Journal of Proteome Research25 citations Open access
Semantic Scholar
Insertion sequence elements-mediated structural variations in bacterial genomes
Etienne Nzabarushimana, Hai-Xu Tang
2018Mobile DNA22 citations Open access
Semantic Scholar
Integration of Clustering and Multidimensional Scaling to Determine Phylogenetic Trees as Spherical Phylograms Visualized in 3 Dimensions
Yang Ruan, Geoffrey L. House, S. Ekanayake, Ursel M. E. Schütte +3 more
20142014 14th IEEE/ACM International Symposium on Cluster, Cloud and Grid Computing20 citations
Semantic Scholar
Insertion Polymorphisms of Mobile Genetic Elements in Sexual and Asexual Populations of Daphnia pulex
Xiaoqian Jiang, Hai-Xu Tang, Zhiqiang Ye, M. Lynch
2017Genome Biology and Evolution19 citations Open access
Semantic Scholar
Probabilistic Inference of Biochemical Reactions in Microbial Communities from Metagenomic Sequences
Da-Zhi Jiao, Yuzhen Ye, Hai-Xu Tang
2013PLoS Comput. Biol.19 citations Open access
Semantic Scholar
Adaptation of Escherichia coli to long-term batch culture in various rich media.
L. L. Westphal, Jasmine Lau, Zuly Negro, Ivan J. Moreno +5 more
2018Research in Microbiology17 citations Open access
Semantic Scholar
Detection of Structural Variants Involving Repetitive Regions in the Reference Genome
Heewook Lee, E. Popodi, P. Foster, Hai-Xu Tang
2014J. Comput. Biol.17 citations
Semantic Scholar
New complexities of SOS-induced “untargeted” mutagenesis in Escherichia coli as revealed by mutation accumulation and whole-genome sequencing.
Brittany A. Niccum, C. P. Coplen, Heewook Lee, W. Ismail +2 more
2020bioRxiv16 citations Open access
Semantic Scholar
Computational Methods in Mass Spectrometry-Based Proteomics.
Sujun Li, Hai-Xu Tang
2016Advances in Experimental Medicine and Biology16 citations
Semantic Scholar
Data Intensive Computing for Bioinformatics
Judy Qiu, Jaliya Ekanayake, Thilina Gunarathne, J. Choi +8 more
201316 citations Open access
Semantic Scholar
DNA sequence templates adjacent nucleosome and ORC sites at gene amplification origins in Drosophila
Jun Liu, Kurt Zimmer, D. Rusch, N. Paranjape +3 more
2015Nucleic Acids Research15 citations Open access
Semantic Scholar
GlycoHybridSeq: Automated Identification of N-Linked Glycopeptides Using Electron Transfer/High-Energy Collision Dissociation (EThcD)
Rui Zhang, Jian-Hui Zhu, D. Lubman, Y. Mechref +1 more
2021Journal of Proteome Research14 citations Open access
Semantic Scholar
XLSearch: a Probabilistic Database Search Algorithm for Identifying Cross-Linked Peptides
Chao Ji, Sujun Li, J. Reilly, P. Radivojac +1 more
2016Journal of Proteome Research14 citations Open access
Semantic Scholar

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