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A. Bhagwat · SciRah

Researcher profile · Semantic Scholar

A. Bhagwat

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A. Bhagwat — researcher profile on SciRah

h-index: 35
Works: 89
Citations: 4,764

Most-cited papers

A nomenclature for restriction enzymes, DNA methyltransferases, homing endonucleases and their genes.
R. Roberts, M. Belfort, T. Bestor, A. Bhagwat +43 more
2003Nucleic Acids Research775 citations Open access
Semantic Scholar
Predictive motifs derived from cytosine methyltransferases.
J. Posfai, A. Bhagwat, G. Pósfai, R. Roberts
1989Nucleic Acids Research458 citations Open access
Semantic Scholar
Human activation-induced cytidine deaminase causes transcription-dependent, strand-biased C to U deaminations.
A. Sohail, J. Klapacz, Mala Samaranayake, Asad Ullah +1 more
2003Nucleic Acids Research278 citations Open access
Semantic Scholar
Transcription-induced mutations: increase in C to T mutations in the nontranscribed strand during transcription in Escherichia coli.
A. Beletskii, A. Bhagwat
1996Proceedings of the National Academy of Sciences of the United States of America258 citations Open access
Semantic Scholar
Phylogenomic identification of five new human homologs of the DNA repair enzyme AlkB
Michal A. Kurowski, A. Bhagwat, Grzegorz Papaj, J. Bujnicki
2003BMC Genomics212 citations Open access
Semantic Scholar
Excision of 5-hydroxymethyluracil and 5-carboxylcytosine by the thymine DNA glycosylase domain: its structural basis and implications for active DNA demethylation
H. Hashimoto, Samuel Hong, A. Bhagwat, Xing Zhang +1 more
2012Nucleic Acids Research157 citations Open access
Semantic Scholar
The COMBREX Project: Design, Methodology, and Initial Results
B. Anton, Yi-Chien Chang, P. Brown, Han-Pil Choi +70 more
2013PLoS Biology140 citations Open access
Semantic Scholar
Transcription-Associated Mutagenesis
S. Jinks-Robertson, A. Bhagwat
2014Annual Review of Genetics126 citations Open access
Semantic Scholar
Efficient deamination of 5-methylcytosines in DNA by human APOBEC3A, but not by AID or APOBEC3G
Priyanga Wijesinghe, A. Bhagwat
2012Nucleic Acids Research119 citations Open access
Semantic Scholar
The Functions and Malfunctions of AID/APOBEC Family Deaminases: the known knowns and the known unknowns
Sachini U. Siriwardena, Kang Chen, A. Bhagwat
2016Chemical Reviews115 citations Open access
Semantic Scholar
Base Damage within Single-Strand DNA Underlies In Vivo Hypermutability Induced by a Ubiquitous Environmental Agent
Kin Chan, J. Sterling, Steven A. Roberts, A. Bhagwat +2 more
2012PLoS Genetics102 citations Open access
Semantic Scholar
An extended APOBEC3A mutation signature in cancer
Adam Langenbucher, Danae Bowen, Ramin Sakhtemani, Elodie Bournique +5 more
2021Nature Communications97 citations Open access
Semantic Scholar
Very short patch repair: reducing the cost of cytosine methylation
M. Lieb, A. Bhagwat
1996Molecular Microbiology95 citations
Semantic Scholar
Strand-biased cytosine deamination at the replication fork causes cytosine to thymine mutations in Escherichia coli
A. Bhagwat, Wei-Long Hao, Jesse P Townes, Heewook Lee +2 more
2016Proceedings of the National Academy of Sciences of the United States of America93 citations Open access
Semantic Scholar
APOBEC3A damages the cellular genome during DNA replication
Abby M. Green, S. Landry, K. Budagyan, Daphne C. Avgousti +3 more
2016Cell Cycle91 citations Open access
Semantic Scholar
Determinants of Sequence-Specificity within Human AID and APOBEC3G
M. Carpenter, Erandi Rajagurubandara, Priyanga Wijesinghe, A. Bhagwat
2010DNA Repair90 citations Open access
Semantic Scholar
Cooperation and competition in mismatch repair: very short‐patch repair and methyl‐directed mismatch repair in Escherichia coli
A. Bhagwat, M. Lieb
2002Molecular Microbiology73 citations Open access
Semantic Scholar
The cysteine conserved among DNA cytosine methylases is required for methyl transfer, but not for specific DNA binding.
M. Wyszynski, S. Gabbara, E. Kubareva, E. A. Romanova +4 more
1993Nucleic Acids Research67 citations Open access
Semantic Scholar
Cytosine deaminations catalyzed by DNA cytosine methyltransferases are unlikely to be the major cause of mutational hot spots at sites of cytosine methylation in Escherichia coli.
M. Wyszynski, Sam Gabbara, A. Bhagwat
1994Proceedings of the National Academy of Sciences of the United States of America65 citations Open access
Semantic Scholar
Mismatch Uracil Glycosylase from Escherichia coli
Rory O'Neill, O. Vorob'eva, H. Shahbakhti, E. Zmuda +2 more
2003Journal of Biological Chemistry64 citations Open access
Semantic Scholar
The Role of the Escherichia coli Mug Protein in the Removal of Uracil and 3,N 4-Ethenocytosine from DNA*
E. Lutsenko, A. Bhagwat
1999Journal of Biological Chemistry63 citations Open access
Semantic Scholar
Nucleotide sequence and expression of the gene encoding the EcoRII modification enzyme
S. Som, A. Bhagwat, S. Friedman
1987Nucleic Acids Res.62 citations Open access
Semantic Scholar
DNA mismatch correction by Very Short Patch repair may have altered the abundance of oligonucleotides in the E. coli genome.
A. Bhagwat, Michael McClelland
1992Nucleic Acids Research61 citations Open access
Semantic Scholar
Mismatch Repair in Methylated DNA
Pei-Shang Wu, C. Qiu, A. Sohail, Xing Zhang +2 more
2003Journal of Biological Chemistry59 citations Open access
Semantic Scholar
Kinetic studies of Escherichia coli AlkB using a new fluorescence-based assay for DNA demethylation
T. Roy, A. Bhagwat
2007Nucleic Acids Research54 citations Open access
Semantic Scholar
FAM72A antagonizes UNG2 to promote mutagenic repair during antibody maturation
Yu-Qing Feng, Cong-Lei Li, Jessica A. Stewart, P. Barbulescu +17 more
2021Nature53 citations Open access
Semantic Scholar
Overproduction of DNA Cytosine Methyltransferases Causes Methylation and C T Mutations at Non-canonical Sites (*)
B. Bandaru, Jaishree Gopal, A. Bhagwat
1996Journal of Biological Chemistry51 citations Open access
Semantic Scholar
Substitutions of a cysteine conserved among DNA cytosine methylases result in a variety of phenotypes.
M. Wyszynski, Sam Gabbara, A. Bhagwat
1992Nucleic Acids Research48 citations Open access
Semantic Scholar
Transcriptional pausing and stalling causes multiple clustered mutations by human activation‐induced deaminase
Chandrika Canugovi, Mala Samaranayake, A. Bhagwat
2009The FASEB Journal42 citations Open access
Semantic Scholar
Transcription-Dependent Increase in Multiple Classes of Base Substitution Mutations in Escherichia coli
J. Klapacz, A. Bhagwat
2002Journal of Bacteriology41 citations Open access
Semantic Scholar
HpaII methyltransferase is mutagenic in Escherichia coli
B. Bandaru, M. Wyszynski, A. Bhagwat
1995Journal of Bacteriology38 citations Open access
Semantic Scholar
Mechanism of expression of DNA repair gene vsr, an Escherichia coli gene that overlaps the DNA cytosine methylase gene, dcm
M. Dar, A. Bhagwat
1993Molecular Microbiology38 citations
Semantic Scholar
Central base pair flipping and discrimination by PspGI
R. Szczepanowski, M. Carpenter, H. Czapinska, M. Zaremba +4 more
2008Nucleic Acids Research37 citations Open access
Semantic Scholar
Primary sequence of the EcoRII endonuclease and properties of its fusions with beta-galactosidase.
A. Bhagwat, B. Johnson, Karin Weule, R. Roberts
1990Journal of Biological Chemistry36 citations Open access
Semantic Scholar
Interaction of EcoRII endonuclease with DNA substrates containing single recognition sites.
Sam Gabbara, A. Bhagwat
1992Journal of Biological Chemistry35 citations Open access
Semantic Scholar
A Versatile New Tool to Quantify Abasic Sites in DNA and Inhibit Base Excision Repair
Shan-Qiao Wei, Sophia Z. Shalhout, Y. Ahn, A. Bhagwat
2015DNA Repair34 citations Open access
Semantic Scholar
Transcription-Induced Cytosine-to-Thymine Mutations Are Not Dependent on Sequence Context of the Target Cytosine
A. Beletskii, A. Bhagwat
2001Journal of Bacteriology34 citations Open access
Semantic Scholar
Evaluation of molecular models for the affinity maturation of antibodies: roles of cytosine deamination by AID and DNA repair.
Mala Samaranayake, J. Bujnicki, M. Carpenter, A. Bhagwat
2006Chemical Reviews31 citations Open access
Semantic Scholar
Transcription promotes guanine to thymine mutations in the non-transcribed strand of an Escherichia coli gene.
J. Klapacz, A. Bhagwat
2005DNA Repair31 citations
Semantic Scholar
Characterization of the Catalytic Domain of Human APOBEC3B and the Critical Structural Role for a Conserved Methionine
Sachini U. Siriwardena, T. A. Guruge, A. Bhagwat
2015Journal of Molecular Biology30 citations Open access
Semantic Scholar
Human Herpes Simplex Virus-1 depletes APOBEC3A from nuclei
Jessica A. Stewart, T. C. Holland, A. Bhagwat
2019Virology28 citations Open access
Semantic Scholar
Escherichia coli DNA glycosylase Mug: a growth‐regulated enzyme required for mutation avoidance in stationary‐phase cells
Sanath K. Mokkapati, A. Dehenestrosa, A. Bhagwat
2001Molecular Microbiology28 citations
Semantic Scholar
Genomic Uracil Homeostasis during Normal B Cell Maturation and Loss of This Balance during B Cell Cancer Development
Sophia Z. Shalhout, Dania Haddad, Angela M. Sosin, T. C. Holland +3 more
2014Molecular and Cellular Biology25 citations Open access
Semantic Scholar
Protection of DNA by α/β-Type Small, Acid-Soluble Proteins from Bacillus subtilis Spores Against Cytosine Deamination†
A. Sohail, C. S. Hayes, Pradeep Divvela, P. Setlow +1 more
200224 citations
Semantic Scholar
Restriction enzymes: properties and use.
A. Bhagwat
1992Methods in Enzymology24 citations
Semantic Scholar
A Tumor-Promoting Phorbol Ester Causes a Large Increase in APOBEC3A Expression and a Moderate Increase in APOBEC3B Expression in a Normal Human Keratinocyte Cell Line without Increasing Genomic Uracils
Sachini U. Siriwardena, Madusha L. W. Perera, Vimukthi Senevirathne, Jessica A. Stewart +1 more
2018Molecular and Cellular Biology22 citations Open access
Semantic Scholar
Sequence-dependent enhancement of hydrolytic deamination of cytosines in DNA by the restriction enzyme PspGI
M. Carpenter, Pradeep Divvela, V. Pingoud, J. Bujnicki +1 more
2006Nucleic Acids Research22 citations Open access
Semantic Scholar
Visualization of uracils created by APOBEC3A using UdgX shows colocalization with RPA at stalled replication forks
Jessica A. Stewart, G. Schauer, A. Bhagwat
2020Nucleic Acids Research21 citations Open access
Semantic Scholar
Genome-wide mapping of regions preferentially targeted by the human DNA-cytosine deaminase APOBEC3A using uracil-DNA pulldown and sequencing
Ramin Sakhtemani, Vimukthi Senevirathne, Jessica A. Stewart, Madusha L. W. Perera +3 more
2019Journal of Biological Chemistry20 citations Open access
Semantic Scholar
Transcription increases methylmethane sulfonate-induced mutations in alkB strains of Escherichia coli.
Douglas F. Fix, Chandrika Canugovi, A. Bhagwat
2008DNA Repair20 citations Open access
Semantic Scholar

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