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Ji-Shu Xu · SciRah

Researcher profile · Semantic Scholar

Ji-Shu Xu

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Ji-Shu Xu — researcher profile on SciRah

h-index: 26
Works: 73
Citations: 4,542

Most-cited papers

A multi-omic atlas of the human frontal cortex for aging and Alzheimer’s disease research
P. De Jager, Yi-Yi Ma, C. McCabe, Ji-Shu Xu +14 more
2018Scientific Data504 citations Open access
Semantic Scholar
A transcriptomic atlas of aged human microglia
M. Olah, E. Patrick, A. Villani, Ji-Shu Xu +16 more
2018Nature Communications496 citations Open access
Semantic Scholar
A molecular network of the aging human brain provides insights into the pathology and cognitive decline of Alzheimer’s disease
S. Mostafavi, C. Gaiteri, S. Sullivan, Charles C. White +17 more
2018Nature Neuroscience473 citations Open access
Semantic Scholar
An xQTL map integrates the genetic architecture of the human brain’s transcriptome and epigenome
B. Ng, Charles C. White, Hans-Ulrich Klein, S. Sieberts +8 more
2017Nature Neuroscience437 citations Open access
Semantic Scholar
Long runs of homozygosity are enriched for deleterious variation.
Z. Szpiech, Ji-Shu Xu, T. Pemberton, Wei-Ping Peng +3 more
2013American Journal of Human Genetics294 citations Open access
Semantic Scholar
Association of Brain DNA Methylation in SORL1, ABCA7, HLA-DRB5, SLC24A4, and BIN1 With Pathological Diagnosis of Alzheimer Disease
Lei Yu, Lori B. Chibnik, G. Srivastava, N. Pochet +9 more
2015JAMA Neurology274 citations Open access
Semantic Scholar
Epigenome-wide study uncovers large-scale changes in histone acetylation driven by tau pathology in the aging and Alzheimer human brain
Hans-Ulrich Klein, C. McCabe, Elizabeta Gjoneska, S. Sullivan +13 more
2018Nature Neuroscience240 citations Open access
Semantic Scholar
Mutation in ATG5 reduces autophagy and leads to ataxia with developmental delay
Myungjin Kim, E. Sandford, D. Gatica, Yu Qiu +18 more
2016eLife209 citations Open access
Semantic Scholar
Population-scale tissue transcriptomics maps long non-coding RNAs to complex disease
Olivia M. de Goede, D. Nachun, N. Ferraro, M. Gloudemans +23 more
2021Cell160 citations Open access
Semantic Scholar
Context-specific effects of neurodegenerative disease variants in a model of human microglia
Katie J. Ryan, Charles C. White, Kruti Patel, Ji-Shu Xu +15 more
2017Science Translational Medicine142 citations Open access
Semantic Scholar
Stem cell derived neurons reflect features of protein networks, neuropathology and cognitive outcome of their aged human donors
Valentina N. Lagomarsino, R. Pearse, Lei Liu, Y. Hsieh +31 more
2021Neuron132 citations Open access
Semantic Scholar
NMNAT2:HSP90 Complex Mediates Proteostasis in Proteinopathies
Yousuf O. Ali, Hunter M. Allen, Lei Yu, David Li-Kroeger +11 more
2016PLoS Biology127 citations Open access
Semantic Scholar
Dominant mutation of CCDC78 in a unique congenital myopathy with prominent internal nuclei and atypical cores.
Karen Majczenko, Ann E. Davidson, S. Camelo-Piragua, Pankaj B. Agrawal +9 more
2012American Journal of Human Genetics94 citations Open access
Semantic Scholar
24-Hour Rhythms of DNA Methylation and Their Relation with Rhythms of RNA Expression in the Human Dorsolateral Prefrontal Cortex
A. Lim, G. Srivastava, Lei Yu, Lori B. Chibnik +6 more
2014PLoS Genetics91 citations Open access
Semantic Scholar
Inferring protein expression changes from mRNA in Alzheimer’s dementia using deep neural networks
S. Tasaki, Ji-Shu Xu, D. Avey, Lynnaun J. A. N. Johnson +5 more
2022Nature Communications82 citations Open access
Semantic Scholar
Dissecting the role of non-coding RNAs in the accumulation of amyloid and tau neuropathologies in Alzheimer’s disease
E. Patrick, Sathyapriya Rajagopal, H. Wong, C. McCabe +9 more
2016Molecular Neurodegeneration80 citations Open access
Semantic Scholar
Enrichment of SARM1 alleles encoding variants with constitutively hyperactive NADase in patients with ALS and other motor nerve disorders
J. Gilley, O. Jackson, M. Pipis, M. Estiar +18 more
2021medRxiv66 citations Open access
Semantic Scholar
Genomic reanalysis of a pan-European rare-disease resource yields new diagnoses
S. Laurie, W. Steyaert, Elke de Boer, K. Polavarapu +105 more
2025Nature Medicine60 citations Open access
Semantic Scholar
Dissecting the human leptomeninges at single-cell resolution
Nicola A. Kearns, Artemis Iatrou, Daniel J. Flood, Sashini L. De Tissera +5 more
2022bioRxiv58 citations Open access
Semantic Scholar
Diurnal and seasonal molecular rhythms in human neocortex and their relation to Alzheimer's disease
A. Lim, Hans-Ulrich Klein, Lei Yu, Lori B. Chibnik +4 more
2017Nature Communications58 citations Open access
Semantic Scholar
Methylation profiles in peripheral blood CD4+ lymphocytes versus brain: the relation to Alzheimer’s disease pathology
Lei Yu, Lori B. Chibnik, Jing-Yun Yang, C. McCabe +4 more
2016Alzheimer's & Dementia49 citations Open access
Semantic Scholar
Atlas of RNA editing events affecting protein expression in aged and Alzheimer’s disease human brain tissue
Yi-Yi Ma, E. Dammer, D. Felsky, D. Duong +18 more
2021Nature Communications47 citations Open access
Semantic Scholar
Candidate‐based screening via gene modulation in human neurons and astrocytes implicates FERMT2 in A&bgr; and TAU proteostasis
S. Sullivan, Meichen Liao, Robert V. Smith, Charles C. White +6 more
2018Human Molecular Genetics42 citations Open access
Semantic Scholar
Unraveling undiagnosed rare disease cases by HiFi long-read genome sequencing
W. Steyaert, L. Sagath, G. Demidov, V. Yépez +49 more
2025Genome Research34 citations Open access
Semantic Scholar
Homozygous splice mutation in CWF19L1 in a Turkish family with recessive ataxia syndrome
Randi M. Burns, Karen Majczenko, Ji-Shu Xu, Wei-Ping Peng +4 more
2014Neurology34 citations Open access
Semantic Scholar
Genomic estimates of aneuploid content in Glioblastoma Multiforme and improved classification
Bo Li, Y. Şenbabaoğlu, Wei-Ping Peng, Min-Lee Yang +2 more
2012Clinical Cancer Research32 citations Open access
Semantic Scholar
A cortical immune network map identifies distinct microglial transcriptional programs associated with β-amyloid and Tau pathologies
E. Patrick, M. Olah, M. Taga, Hans-Ulrich Klein +11 more
2021Translational Psychiatry27 citations Open access
Semantic Scholar
Uncovering plaque-glia niches in human Alzheimer’s disease brains using spatial transcriptomics
Denis R. Avey, Bernard Ng, R. Vialle, Nicola A. Kearns +11 more
2025Molecular Neurodegeneration Advances25 citations Open access
Semantic Scholar
Twist exome capture allows for lower average sequence coverage in clinical exome sequencing
B. Yaldiz, Erdi Kucuk, J. Hampstead, T. Hofste +296 more
2023Human Genomics24 citations Open access
Semantic Scholar
Exome Capture and Massively Parallel Sequencing Identifies a Novel HPSE2 Mutation in a Saudi Arabian Child with Ochoa (Urofacial) Syndrome
Wisam Al Badr, Suha Albader, E. Otto, F. Hildebrandt +7 more
2011Journal of Pediatric Urology23 citations Open access
Semantic Scholar
Unravelling undiagnosed rare disease cases by HiFi long-read genome sequencing
W. Steyaert, L. Sagath, G. Demidov, V. Yépez +49 more
2024medRxiv18 citations Open access
Semantic Scholar
Sensitized mutagenesis screen in Factor V Leiden mice identifies thrombosis suppressor loci
R. Westrick, Kärt Tomberg, Amy E. Siebert, Guo-Jing Zhu +14 more
2017Proceedings of the National Academy of Sciences of the United States of America16 citations Open access
Semantic Scholar
SR-TWAS: leveraging multiple reference panels to improve transcriptome-wide association study power by ensemble machine learning
R. Parrish, A. Buchman, S. Tasaki, Yan-Ling Wang +6 more
2024Nature Communications14 citations Open access
Semantic Scholar
Imaging-AMARETTO: An Imaging Genomics Software Tool to Interrogate Multiomics Networks for Relevance to Radiography and Histopathology Imaging Biomarkers of Clinical Outcomes
O. Gevaert, Mohsen Nabian, Shaimaa Bakr, Celine Everaert +16 more
2020JCO Clinical Cancer Informatics12 citations Open access
Semantic Scholar
The kinesin motor KIF1C is a putative transporter of the exon junction complex in neuronal cells
Maike Nagel, Marvin Noß, Ji-Shu Xu, Nicola Horn +3 more
2022bioRxiv11 citations Open access
Semantic Scholar
A cortical immune network map identifies a subset of human microglia involved in Tau pathology
E. Patrick, M. Olah, M. Taga, Hans-Ulrich Klein +10 more
2017bioRxiv11 citations Open access
Semantic Scholar
An UNC5C Allele Predicts Cognitive Decline and Hippocampal Atrophy in Clinically Normal Older Adults
Hyun-Sik Yang, J. Chhatwal, Ji-Shu Xu, Charles C. White +16 more
2019Journal of Alzheimer's Disease8 citations Open access
Semantic Scholar
Epigenome-wide study uncovers tau pathology-driven changes of chromatin organization in the aging human brain
Hans-Ulrich Klein, C. McCabe, Elizabeta Gjoneska, S. Sullivan +13 more
2018bioRxiv8 citations Open access
Semantic Scholar
A molecular network of the aging brain implicates INPPL1 and PLXNB1 in Alzheimer’s disease
S. Mostafavi, C. Gaiteri, S. Sullivan, Charles C. White +17 more
2017bioRxiv8 citations Open access
Semantic Scholar
Genetic Epistasis Regulates Amyloid Deposition in Resilient Aging
D. Felsky, Ji-Shu Xu, Lori B. Chibnik, J. Schneider +5 more
2017Alzheimer's & Dementia7 citations Open access
Semantic Scholar
Sleep, pericyte subtypes and cognitive decline in adults with and without Alzheimer’s disease
M. Hamid, Trishna Saha Detroja, S. Tripathy, Vilas Menon +7 more
2025Brain : a journal of neurology5 citations Open access
Semantic Scholar
Differential gene expression analysis based on linear mixed model corrects false positive inflation for studying quantitative traits
Shi-Zhen Tang, A. Buchman, Yan-Ling Wang, Denis R. Avey +5 more
2023Scientific Reports5 citations Open access
Semantic Scholar
Long-read RNA-sequencing reveals transcript-specific regulation in human-derived cortical neurons
Ji-Shu Xu, M. Hörner, E. B. Atienza, Kalaivani Manibarathi +6 more
2024bioRxiv4 citations Open access
Semantic Scholar
The YTHDF proteins shape the brain gene signatures of Alzheimer’s disease
S. Tasaki, Denis R. Avey, Nicola A. Kearns, Chun-Jiang Yu +18 more
2024bioRxiv3 citations Open access
Semantic Scholar
A Multi-omic Atlas of Human Choroid Plexus in Alzheimer’s Disease
Tristan J. Philippe, Denis R. Avey, Nicola A. Kearns, Himanshu Vyas +9 more
2025bioRxiv2 citations
Semantic Scholar
Modeling stimulus-induced stress responses in microglia-like cells using a commercial iPSC-dCas9-KRAB line
Devin M. Saunders, Nicola A. Kearns, Bernard Ng, Faraz Sultan +7 more
2025bioRxiv1 citations Open access
Semantic Scholar
Unraveling Axonal Transcriptional Landscapes: Insights from iPSC-Derived Cortical Neurons and Implications for Motor Neuron Degeneration
Ji-Shu Xu, M. Hörner, Maike Nagel, Perwin Perhat +7 more
2024bioRxiv1 citations Open access
Semantic Scholar
Integrated Spatial and Single-Nuclei Transcriptomic Analysis of Long Non-Coding RNAs in Alzheimer’s Disease
Bernard Ng, Denis R. Avey, Faraz Sultan, Katia de Paiva Lopes +17 more
2024bioRxiv1 citations Open access
Semantic Scholar
Single‐nuclei RNA‐Sequencing of Postmortem Choroid Plexus Uncovers Dysfunction Alzheimer’s disease
Tristan J. Philippe, Nicola A. Kearns, Denis R. Avey, Devin M. Saunders +5 more
2024Alzheimer's & Dementia1 citations Open access
Semantic Scholar
The role of non-coding RNAs in Alzheimer’s disease
E. Patrick, Sathyapriya Rajagopal, H. Wong, C. McCabe +9 more
20201 citations Open access
Semantic Scholar

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