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S. Quake · SciRah

Researcher profile · Semantic Scholar

S. Quake

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S. Quake — researcher profile on SciRah

h-index: 127
Works: 515
Citations: 74K

Most-cited papers

SARS-CoV-2 Receptor ACE2 Is an Interferon-Stimulated Gene in Human Airway Epithelial Cells and Is Detected in Specific Cell Subsets across Tissues
Carly G. K. Ziegler, Samuel J. Allon, Sarah K. Nyquist, I. Mbano +111 more
2020Cell2,176 citations Open access
Semantic Scholar
The Tabula Sapiens: A multiple-organ, single-cell transcriptomic atlas of humans
S. Quake
2021bioRxiv1,194 citations Open access
Semantic Scholar
A Single Cell Transcriptomic Atlas Characterizes Aging Tissues in the Mouse
N. Almanzar, Jane Antony, Ankit S. Baghel, Isaac Bakerman +130 more
2020Nature1,027 citations Open access
Semantic Scholar
Fly Cell Atlas: a single-nucleus transcriptomic atlas of the adult fruit fly
Hong-Jie Li, Jasper Janssens, M. de Waegeneer, Sai Saroja Kolluru +154 more
2022Science666 citations Open access
Semantic Scholar
Physiological blood–brain transport is impaired with age by a shift in transcytosis
Andrew C. Yang, Marc Y. Stevens, Michelle B. Chen, Davis P. Lee +24 more
2020Nature420 citations Open access
Semantic Scholar
Early prediction of preeclampsia in pregnancy with cell-free RNA
M. Moufarrej, S. Vorperian, R. Wong, A. A. Campos +13 more
2022Nature222 citations Open access
Semantic Scholar
Brain Endothelial Cells Are Exquisite Sensors of Age-Related Circulatory Cues
Michelle B. Chen, Andrew C. Yang, H. Yousef, Davis P. Lee +5 more
2020Cell Reports210 citations Open access
Semantic Scholar
Cerebellar nuclei evolved by repeatedly duplicating a conserved cell-type set
J. Kebschull, Ethan B Richman, Noam Ringach, Drew Friedmann +12 more
2020Science202 citations Open access
Semantic Scholar
RNA profiles reveal signatures of future health and disease in pregnancy
Morten Rasmussen, Mitsu Reddy, Rory Nolan, J. Camunas-Soler +33 more
2022Nature161 citations Open access
Semantic Scholar
Detection of early stage pancreatic cancer using 5-hydroxymethylcytosine signatures in circulating cell free DNA
G. Guler, Y. Ning, Chin-Jen Ku, T. Phillips +12 more
2020Nature Communications160 citations Open access
Semantic Scholar
Memory B Cell Activation, Broad Anti-influenza Antibodies, and Bystander Activation Revealed by Single-Cell Transcriptomics
Felix Horns, C. Dekker, S. Quake
2020Cell Reports147 citations Open access
Semantic Scholar
Molecular hallmarks of heterochronic parabiosis at single cell resolution
Róbert Pálovics, A. Keller, N. Schaum, Weilun Tan +137 more
2022Nature127 citations Open access
Semantic Scholar
Differential encoding in prefrontal cortex projection neuron classes across cognitive tasks
J. Lui, Nghia D. Nguyen, Sophie M. Grutzner, S. Darmanis +9 more
2020bioRxiv113 citations Open access
Semantic Scholar
Aging Fly Cell Atlas Identifies Exhaustive Aging Features at Cellular Resolution
Tzu-Chiao Lu, Maria Brbić, Ye-Jin Park, Tyler Jackson +21 more
2023bioRxiv101 citations Open access
Semantic Scholar
Single-cell quantification of a broad RNA spectrum reveals unique noncoding patterns associated with cell types and states
Alina A. Isakova, N. Neff, S. Quake
2021Proceedings of the National Academy of Sciences of the United States of America97 citations Open access
Semantic Scholar
Persistent transcriptional programmes are associated with remote memory
Michelle B. Chen, Xian Jiang, S. Quake, T. Südhof
2020Nature97 citations Open access
Semantic Scholar
Metasurface optofluidics for dynamic control of light fields
Qi-Tong Li, J. van de Groep, Adam K. White, Jung-Hwan Song +5 more
2022Nature Nanotechnology80 citations
Semantic Scholar
Multiomic immune clockworks of pregnancy
Laura S. Peterson, I. Stelzer, A. Tsai, M. S. Ghaemi +16 more
2020Seminars in Immunopathology76 citations Open access
Semantic Scholar
Reciprocal repulsions instruct the precise assembly of parallel hippocampal networks
Daniel T. Pederick, J. Lui, Ellen C. Gingrich, Chuan-Yun Xu +5 more
2021Science75 citations Open access
Semantic Scholar
Heterogenous impairment of α-cell function in type 2 diabetes is linked to cell maturation state
Xiao-Qing Dai, J. Camunas-Soler, L. Briant, Theodore dos Santos +20 more
2022Cell Metabolism68 citations Open access
Semantic Scholar
Noninvasive characterization of Alzheimer’s disease by circulating, cell-free messenger RNA next-generation sequencing
Shusuke Toden, Jia-Li Zhuang, Alexander D. Acosta, Amy P. Karns +7 more
2020Science Advances68 citations Open access
Semantic Scholar
Early prediction and longitudinal modeling of preeclampsia from multiomics
I. Marić, K. Contrepois, M. Moufarrej, I. Stelzer +29 more
2022Patterns60 citations Open access
Semantic Scholar
RNA splicing programs define tissue compartments and cell types at single-cell resolution
J. Olivieri, Roozbeh Dehghannasiri, Peter L. Wang, SoRi Jang +8 more
2021bioRxiv55 citations Open access
Semantic Scholar
Microbial communities of Auka hydrothermal sediments shed light on vent biogeography and the evolutionary history of thermophily
D. Speth, F. Yu, S. Connon, Sujung Lim +4 more
2022The ISME Journal53 citations Open access
Semantic Scholar
Single-cell analysis of Schistosoma mansoni identifies a conserved genetic program controlling germline stem cell fate
Peng-Yang Li, Dania Nanes Sarfati, Yuan Xue, Xi Yu +3 more
2021Nature Communications50 citations Open access
Semantic Scholar
Gut cytokines modulate olfaction through metabolic reprogramming of glia
Xiaoyu Tracy Cai, Hong-Jie Li, M. B. Jensen, Élie Maksoud +6 more
2021Nature49 citations Open access
Semantic Scholar
Global and cell type-specific immunological hallmarks of severe dengue progression identified via a systems immunology approach
L. Ghita, Zhi-Yuan Yao, Yike Xie, Verónica Durán +20 more
2023bioRxiv48 citations
Semantic Scholar
Quantifying rapid bacterial evolution and transmission within the mouse intestine
Kimberly S. Vasquez, L. Willis, Nate J. Cira, K. Ng +12 more
2021Cell Host and Microbe45 citations Open access
Semantic Scholar
Transcriptional and functional motifs defining renal function revealed by single-nucleus RNA sequencing
Jun Xu, Yi-Fang Liu, Hong-Jie Li, Alexander J. Tarashansky +11 more
2022Proceedings of the National Academy of Sciences of the United States of America43 citations Open access
Semantic Scholar
A decade of molecular cell atlases.
S. Quake
2022Trends in Genetics42 citations Open access
Semantic Scholar
Fly Cell Atlas: a single-cell transcriptomic atlas of the adult fruit fly
Hong-Jie Li, Jasper Janssens, M. de Waegeneer, Sai Saroja Kolluru +36 more
2021bioRxiv41 citations Open access
Semantic Scholar
Noninvasive Prenatal Testing Using Circulating DNA and RNA: Advances, Challenges, and Possibilities
M. Moufarrej, D. Bianchi, Gary M. Shaw, D. Stevenson +1 more
2023Annual Review of Biomedical Data Science39 citations Open access
Semantic Scholar
Sexual and asexual development: two distinct programs producing the same tunicate
M. Kowarsky, C. Anselmi, K. Hotta, P. Burighel +12 more
2021Cell Reports39 citations Open access
Semantic Scholar
Neuroendocrinology of the lung revealed by single-cell RNA sequencing
Christin S. Kuo, S. Darmanis, Alexander J. Diaz de Arce, Yin Liu +4 more
2022bioRxiv38 citations Open access
Semantic Scholar
Isolation and RNA sequencing of single nuclei from Drosophila tissues
C. McLaughlin, Yan-Yan Qi, S. Quake, Liqun Luo +1 more
2022STAR Protocols34 citations Open access
Semantic Scholar
Tuning MPL signaling to influence hematopoietic stem cell differentiation and inhibit essential thrombocythemia progenitors
L. Cui, I. Moraga, Tristan Lerbs, Camille van Neste +13 more
2020Proceedings of the National Academy of Sciences of the United States of America33 citations Open access
Semantic Scholar
Differential Impacts on Host Transcription by ROP and GRA Effectors from the Intracellular Parasite Toxoplasma gondii
Suchita Rastogi, Yuan Xue, S. Quake, J. Boothroyd
2020mBio33 citations Open access
Semantic Scholar
Coronary blood vessels from distinct origins converge to equivalent states during mouse and human development
Ragini Phansalkar, J. Krieger, Mingming Zhao, Sai Saroja Kolluru +7 more
2021bioRxiv32 citations Open access
Semantic Scholar
Towards personalized medicine in maternal and child health: integrating biologic and social determinants
D. Stevenson, R. Wong, N. Aghaeepour, I. Marić +23 more
2020Pediatric Research31 citations Open access
Semantic Scholar
Sequential sequencing by synthesis and the next-generation sequencing revolution.
M. Uhlén, S. Quake
2023Trends in Biotechnology30 citations Open access
Semantic Scholar
Single-cell RNA sequencing of SARS–CoV-2 cell entry factors in the preconceptional human endometrium
F. Vilella, W.-X. Wang, I. Moreno, B. Rosón +2 more
2021Human Reproduction30 citations Open access
Semantic Scholar
Single-cell profiling identifies ACE+ granuloma macrophages as a nonpermissive niche for intracellular bacteria during persistent Salmonella infection
Trung H. M. Pham, Yuan Xue, Susan M. Brewer, Kenneth E. Bernstein +2 more
2022bioRxiv27 citations Open access
Semantic Scholar
Tabula Microcebus: A transcriptomic cell atlas of mouse lemur, an emerging primate model organism
C. Ezran, Shixuan Liu, Stephen Chang, Jingsi Ming +35 more
2021bioRxiv27 citations Open access
Semantic Scholar
Developmental diversity and unique sensitivity to injury of lung endothelial subtypes during postnatal growth
Fabio Zanini, X. Che, Carsten Knutsen, Min Liu +9 more
2023iScience24 citations Open access
Semantic Scholar
Single-cell transcriptome and accessible chromatin dynamics during endocrine pancreas development
E. Duvall, Cecil Benitez, Krissie Tellez, M. Enge +8 more
2022bioRxiv24 citations Open access
Semantic Scholar
The cell as a bag of RNA.
S. Quake
2021Trends in Genetics24 citations Open access
Semantic Scholar
Temperature effect on polymerase fidelity
Yuan Xue, I. Braslavsky, S. Quake
2021bioRxiv22 citations Open access
Semantic Scholar
Non-invasive Stratification of Non-Alcoholic Fatty Liver Disease by Whole-transcriptome Cell-free mRNA Characterization.
N. Chalasani, Shusuke Toden, J. Sninsky, R. Rava +6 more
2021American Journal of Physiology - Gastrointestinal and Liver Physiology21 citations Open access
Semantic Scholar
Single cell profiling of total RNA using Smart-seq-total
Alina A. Isakova, N. Neff, S. Quake
2020bioRxiv17 citations Open access
Semantic Scholar
Heterologous reporter expression in the planarian Schmidtea mediterranea through somatic mRNA transfection
R. N. Hall, U. Weill, Leonard Drees, Sergio A. Leal-Ortiz +11 more
2022bioRxiv16 citations Open access
Semantic Scholar

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