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C. Calabrese · SciRah

Researcher profile · Semantic Scholar

C. Calabrese

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C. Calabrese — researcher profile on SciRah

h-index: 20
Works: 38
Citations: 1,887

Most-cited papers

Genomic basis for RNA alterations in cancer
C. Calabrese, Natalie R. Davidson, Deniz C. Demircioglu, Nuno A. Fonseca +70 more
2020Nature357 citations Open access
Semantic Scholar
A Pan-cancer Transcriptome Analysis Reveals Pervasive Regulation through Alternative Promoters.
Deniz C. Demircioglu, Engin Cukuroglu, M. Kindermans, T. Nandi +10 more
2019Cell211 citations Open access
Semantic Scholar
MToolBox: a highly automated pipeline for heteroplasmy annotation and prioritization analysis of human mitochondrial variants in high-throughput sequencing
C. Calabrese, D. Simone, M. Diroma, Mariangela Santorsola +5 more
2014Bioinform.197 citations Open access
Semantic Scholar
Upregulation of miR-21 by Ras in vivo and its role in tumor growth
D. Frezzetti, M. D. Menna, P. Zoppoli, C. Guerra +10 more
2011Oncogene142 citations Open access
Semantic Scholar
Respiratory complex I is essential to induce a Warburg profile in mitochondria-defective tumor cells
C. Calabrese, L. Iommarini, I. Kurelac, M. Calvaruso +21 more
2013Cancer & Metabolism95 citations Open access
Semantic Scholar
An atlas of mitochondrial DNA genotype-phenotype associations in the UK Biobank
Ekaterina Yonova-Doing, C. Calabrese, A. Gomez-Duran, K. Schon +4 more
2021Nature Genetics91 citations Open access
Semantic Scholar
HmtDB, a genomic resource for mitochondrion-based human variability studies
Francesco Rubino, R. Piredda, F. M. Calabrese, D. Simone +6 more
2011Nucleic Acids Res.88 citations Open access
Semantic Scholar
Mitochondrial Disease Sequence Data Resource (MSeqDR): A global grass-roots consortium to facilitate deposition, curation, annotation, and integrated analysis of genomic data for the mitochondrial disease clinical and research communities
Marni J. Falk, Li-Shuang Shen, Michael A. Gonzalez, Jeremy Leipzig +83 more
2014Molecular Genetics and Metabolism85 citations Open access
Semantic Scholar
Extraction and annotation of human mitochondrial genomes from 1000 Genomes Whole Exome Sequencing data
M. Diroma, C. Calabrese, D. Simone, Mariangela Santorsola +3 more
2014BMC Genomics73 citations Open access
Semantic Scholar
Use of whole genome sequencing to determine genetic basis of suspected mitochondrial disorders: cohort study
K. Schon, R. Horvath, Wei Wei, C. Calabrese +26 more
2021British medical journal72 citations Open access
Semantic Scholar
Mitochondrial DNA variants modulate N-formylmethionine, proteostasis and risk of late-onset human diseases
Na Cai, A. Gomez-Duran, Ekaterina Yonova-Doing, Kousik Kundu +24 more
2021Nature Medicine60 citations Open access
Semantic Scholar
HmtDB 2016: data update, a better performing query system and human mitochondrial DNA haplogroup predictor
Rosanna Clima, R. Preste, C. Calabrese, M. Diroma +6 more
2016Nucleic Acids Res.57 citations Open access
Semantic Scholar
Evidence of association of human papillomavirus with prognosis worsening in glioblastoma multiforme.
Michele Vidone, F. Alessandrini, G. Marucci, A. Farnedi +7 more
2014Neuro-Oncology46 citations Open access
Semantic Scholar
Metabolic shift underlies recovery in reversible infantile respiratory chain deficiency
D. Hathazi, H. Griffin, M. Jennings, M. Giunta +34 more
2020EMBO Journal43 citations Open access
Semantic Scholar
A multi-parametric workflow for the prioritization of mitochondrial DNA variants of clinical interest
Mariangela Santorsola, C. Calabrese, Giulia Girolimetti, M. Diroma +2 more
2015Human Genetics39 citations Open access
Semantic Scholar
Germline determinants of the somatic mutation landscape in 2,642 cancer genomes
Sebastian M. Waszak, Grace Tiao, Bin Zhu, T. Rausch +87 more
2017bioRxiv34 citations Open access
Semantic Scholar
Searching for a needle in the haystack: comparing six methods to evaluate heteroplasmy in difficult sequence context.
I. Kurelac, M. Lang, R. Zuntini, C. Calabrese +6 more
2012Biotechnology Advances32 citations
Semantic Scholar
A comprehensive characterization of mitochondrial DNA mutations in glioblastoma multiforme.
Michele Vidone, Rosanna Clima, Mariangela Santorsola, C. Calabrese +12 more
2015International Journal of Biochemistry and Cell Biology31 citations
Semantic Scholar
Heteroplasmic mitochondrial DNA variants in cardiovascular diseases
C. Calabrese, A. Pyle, H. Griffin, J. Coxhead +14 more
2022PLoS Genetics28 citations Open access
Semantic Scholar
Genomic basis for RNA alterations revealed by whole-genome analyses of 27 cancer types
C. Calabrese, Natalie R. Davidson, Nuno A. Fonseca, Y. He +45 more
201727 citations Open access
Semantic Scholar
Pan-cancer study of heterogeneous RNA aberrations
Nuno A. Fonseca, A. Kahles, K. Lehmann, C. Calabrese +65 more
2017bioRxiv15 citations Open access
Semantic Scholar
Deep sequencing unearths nuclear mitochondrial sequences under Leber's hereditary optic neuropathy-associated false heteroplasmic mitochondrial DNA variants.
V. Petruzzella, R. Carrozzo, C. Calabrese, Rosa Dell’Aglio +9 more
2012Human Molecular Genetics15 citations
Semantic Scholar
Single-molecule mitochondrial DNA sequencing shows no evidence of CpG methylation in human cells and tissues
Iacopo Bicci, C. Calabrese, Zoe Golder, A. Gomez-Duran +1 more
2021Nucleic Acids Research13 citations Open access
Semantic Scholar
High-resolution genomic profiling of thyroid lesions uncovers preferential copy number gains affecting mitochondrial biogenesis loci in the oncocytic variants.
I. Kurelac, D. de Biase, C. Calabrese, C. Ceccarelli +8 more
2015American Journal of Cancer Research9 citations
Semantic Scholar
A platform independent RNA-Seq protocol for the detection of transcriptome complexity
C. Calabrese, Marina Mangiulli, C. Manzari, Anna Maria Paluscio +14 more
2013BMC Genomics9 citations Open access
Semantic Scholar
A pan cancer analysis of promoter activity highlights the regulatory role of alternative transcription start sites and their association with noncoding mutations
Deniz C. Demircioglu, M. Kindermans, T. Nandi, Engin Cukuroglu +10 more
2017bioRxiv8 citations Open access
Semantic Scholar
Oxford Nanopore sequencing-based protocol to detect CpG methylation in human mitochondrial DNA
Iacopo Bicci, C. Calabrese, Zoe Golder, A. Gomez-Duran +1 more
2021bioRxiv5 citations Open access
Semantic Scholar
Assessing the Gene Regulatory Landscape in 1,188 Human Tumors
C. Calabrese, K. Lehmann, L. Urban, F. Liu +12 more
2017bioRxiv4 citations Open access
Semantic Scholar
Mitochondrial Mutations in Cancer Progression: Causative, Bystanders, or Modifiers of Tumorigenesis?
I. Kurelac, Michele Vidone, Giulia Girolimetti, C. Calabrese +1 more
20152 citations
Semantic Scholar
Abstract SY10-02: Pan-cancer study of recurrent and heterogeneous RNA aberrations and association with whole-genome variants
S. Amin, P. Awadalla, A. Biankin, P. Boutros +45 more
20171 citations
Semantic Scholar
Respiratory complex I is essential to induce a Warburg profile in mitochondria-defective tumor cells
C. Calabrese, L. Iommarini, I. Kurelac, M. Calvaruso +21 more
2013Cancer & Metabolism1 citations Open access
Semantic Scholar
Author Correction: Genomic basis for RNA alterations in cancer
C. Calabrese, Natalie R. Davidson, Deniz C. Demircioglu, Nuno A. Fonseca +46 more
2023Nature0 citations Open access
Semantic Scholar
MtDNA genotype-phenotype associations found in the UKBiobank
E. Doing, C. Calabrese, A. Gomez-Duran, K. Schon +4 more
20210 citations
Semantic Scholar
Methods for the identification of mitochondrial DNA variants
C. Calabrese, A. Gomez-Duran, A. Reyes, M. Attimonelli
20200 citations
Semantic Scholar
List of Contributors.
A. Achilli, M. Attimonelli, S. Bacman, Antonio Barrientos +59 more
2019Journal of Analytical Psychology0 citations
Semantic Scholar
Mitochondrial DNA mutations are involved in the development of childhood myelodysplastic syndrome
Renaud Vatrinet, I. Kurelac, L. Iommarini, C. Calabrese +2 more
20170 citations
Semantic Scholar
Abstract 389: Integrating diverse transcriptomic alterations to identify cancer-relevant genes
Natalie R. Davidson, A. Brazma, A. Brooks, C. Calabrese +14 more
20170 citations
Semantic Scholar
Targeting respiratory Complex I: A metabolic strategy to prevent tumor progression
Renaud Vatrinet, I. Kurelac, L. Iommarini, Laura Benedetta Amato +11 more
20160 citations Open access
Semantic Scholar

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