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P. Boutros · SciRah

Researcher profile · Semantic Scholar

P. Boutros

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P. Boutros — researcher profile on SciRah

h-index: 85
Works: 555
Citations: 36K

Most-cited papers

Single-cell analysis reveals transcriptomic remodellings in distinct cell types that contribute to human prostate cancer progression
Sujun Chen, Guang-Hui Zhu, Yue Yang, Fu-Bo Wang +29 more
2021Nature Cell Biology427 citations
Semantic Scholar
A Clinically Applicable Integrative Molecular Classification of Meningiomas
F. Nassiri, Jeffrey C. Liu, Vikas Patil, Y. Mamatjan +22 more
2021Nature387 citations
Semantic Scholar
Glioblastoma evolution and heterogeneity from a 3D whole-tumor perspective
Radhika Mathur, Qi-Xuan Wang, Patrick G. Schupp, A. Nikolic +26 more
2024Cell210 citations Open access
Semantic Scholar
A practical guide to cancer subclonal reconstruction from DNA sequencing
M. Tarabichi, A. Salcedo, A. Deshwar, Máire Ní Leathlobhair +5 more
2021Nature Methods164 citations Open access
Semantic Scholar
Drug screening at single-organoid resolution via bioprinting and interferometry
Peyton J. Tebon, Bowen Wang, Alexander L. Markowitz, Ardalan Davarifar +11 more
2021bioRxiv145 citations Open access
Semantic Scholar
A second update on mapping the human genetic architecture of COVID-19
Masahiro Shea J. Mattia Christine Benjamin M. Mark Andrea G Kanai Andrews Cordioli Stevens Neale Daly Ganna Pa, Masahiro Shea J. Mattia Christine Benjamin M. Mark Andrea Kanai Andrews Cordioli Stevens Neale Daly Ganna, Masahiro Kanai, S. Andrews +496 more
2022Nature108 citations Open access
Semantic Scholar
The Mutational Landscape of Metastatic Castration-sensitive Prostate Cancer: The Spectrum Theory Revisited
M. Deek, K. Van der Eecken, R. Phillips, N. Parikh +20 more
2021European Urology93 citations Open access
Semantic Scholar
Quantitative and Qualitative Analysis of Blood-based Liquid Biopsies to Inform Clinical Decision-making in Prostate Cancer.
I. Casanova-Salas, Alejandro Athie, P. Boutros, M. Del Re +7 more
2021European Urology85 citations Open access
Semantic Scholar
The genomic and evolutionary landscapes of anaplastic thyroid carcinoma
Peter Y. F. Zeng, S. Prokopec, Stephen Y. Lai, N. Pinto +65 more
2023medRxiv83 citations Open access
Semantic Scholar
Estimation of tumor cell total mRNA expression in 15 cancer types predicts disease progression
S. Cao, J. Wang, Shuang-Xi Ji, Peng-Xiang Yang +36 more
2022Nature Biotechnology67 citations Open access
Semantic Scholar
Exome-wide association study to identify rare variants influencing COVID-19 outcomes: Results from the Host Genetics Initiative
G. Butler-Laporte, G. Povysil, J. Kosmicki, E. Cirulli +154 more
2022medRxiv61 citations Open access
Semantic Scholar
Proteomic discovery of non-invasive biomarkers of localized prostate cancer using mass spectrometry
Amanda S. Khoo, Lydia Y. Liu, J. Nyalwidhe, O. Semmes +5 more
2021Nature reviews. Urology58 citations Open access
Semantic Scholar
CRISPRi screens reveal a DNA methylation-mediated 3D genome dependent causal mechanism in prostate cancer
Musaddeque Ahmed, Fraser Soares, Jihan Xia, Yue Yang +28 more
2021Nature Communications57 citations Open access
Semantic Scholar
The 5-Hydroxymethylcytosine Landscape of Prostate Cancer
Martin Sjöström, S. Zhao, S. Levy, Meng Zhang +60 more
2022Cancer Research55 citations Open access
Semantic Scholar
Optimization of small extracellular vesicle isolation from expressed prostatic secretions in urine for in‐depth proteomic analysis
Vanessa L. Correll, Joseph J. Otto, C. Risi, B. Main +6 more
2022Journal of Extracellular Vesicles54 citations Open access
Semantic Scholar
Increased mRNA expression of CDKN2A is a transcriptomic marker of clinically aggressive meningiomas
Justin Z. Wang, Vikas Patil, Jeffrey C. Liu, H. Dogan +19 more
2022bioRxiv50 citations Open access
Semantic Scholar
Virally programmed extracellular vesicles sensitize cancer cells to oncolytic virus and small molecule therapy
Marie-Eve Wedge, Victoria Jennings, M. Crupi, Joanna Poutou +41 more
2022Nature Communications49 citations Open access
Semantic Scholar
Interplay Between Duration of Androgen Deprivation Therapy and External Beam Radiotherapy With or Without a Brachytherapy Boost for Optimal Treatment of High-risk Prostate Cancer
A. Kishan, A. Steigler, J. Denham, A. Zapatero +55 more
2022JAMA Oncology46 citations Open access
Semantic Scholar
Aging of the Progenitor Cells that Initiate Prostate Cancer
John G. Freeland, Preston D. Crowell, Jenna M. Giafaglione, P. Boutros +1 more
2021Cancer Letters38 citations Open access
Semantic Scholar
The landscape of drug sensitivity and resistance in sarcoma
Ahmad Al-Shihabi, Peyton J. Tebon, H. Nguyen, J. Chantharasamee +21 more
2023bioRxiv37 citations Open access
Semantic Scholar
Pan-Cancer Analysis of Post-Diagnosis Exercise and Mortality
J. Lavery, P. Boutros, Jessica Scott, T. Tammela +2 more
2023Journal of Clinical Oncology35 citations Open access
Semantic Scholar
The proteomic landscape of Glioblastoma recurrence reveals novel and targetable immunoregulatory drivers
N. Tatari, Shahbaz Khan, J. Livingstone, Kui Zhai +24 more
2022Acta Neuropathologica33 citations Open access
Semantic Scholar
HLA-A∗02:01 restricted T cell receptors against the highly conserved SARS-CoV-2 polymerase cross-react with human coronaviruses
Pavlo A. Nesterenko, J. McLaughlin, Brandon L. Tsai, Giselle Burton Sojo +19 more
2021Cell Reports33 citations Open access
Semantic Scholar
Immune-based classification of HPV-associated oropharyngeal cancer with implications for biomarker-driven treatment de-intensification
Peter Y. F. Zeng, M. Cecchini, J. Barrett, M. Shammas-Toma +39 more
2022EBioMedicine32 citations Open access
Semantic Scholar
Somatic driver mutation prevalence in 1844 prostate cancers identifies ZNRF3 loss as a predictor of metastatic relapse
Michael Fraser, J. Livingstone, J. Wrana, A. Finelli +5 more
2021Nature Communications31 citations Open access
Semantic Scholar
A community challenge to evaluate RNA-seq, fusion detection, and isoform quantification methods for cancer discovery
Allison L. Creason, David Haan, Kristen K. Dang, K. Chiotti +25 more
2021Cell Systems30 citations Open access
Semantic Scholar
Performance of a Prostate-Specific Membrane Antigen Positron Emission Tomography/Computed Tomography–Derived Risk-Stratification Tool for High-risk and Very High-risk Prostate Cancer
M. Xiang, T. Ma, R. Savjani, E. Pollom +60 more
2021JAMA Network Open27 citations Open access
Semantic Scholar
Fumarate Hydratase Variant Prevalence and Manifestations Among Individuals Receiving Germline Testing
Eric Lu, K. Hatchell, S. Nielsen, E. Esplin +9 more
2021Cancer24 citations Open access
Semantic Scholar
Patterns of Clinical Progression in Radiorecurrent High-risk Prostate Cancer
R. Philipson, T. Romero, J. Wong, B. Stish +48 more
2021European Urology24 citations Open access
Semantic Scholar
Comparison of Response to Definitive Radiotherapy for Localized Prostate Cancer in Black and White Men
T. Ma, T. Romero, N. Nickols, M. Rettig +27 more
2021JAMA Network Open21 citations Open access
Semantic Scholar
Prostate cancer multiparametric magnetic resonance imaging visibility is a tumor-intrinsic phenomena
Amanda S. Khoo, Lydia Y. Liu, Taylor Y. Sadun*, A. Salmasi +9 more
2022Journal of Hematology & Oncology19 citations Open access
Semantic Scholar
Loss of LRP1B expression drives acquired chemo and radio-resistance in HPV-positive head and neck cancer.
M. Shaikh, Alice E. Dawson, S. Prokopec, J. Barrett +8 more
2023Oral Oncology18 citations Open access
Semantic Scholar
Single-cell analysis in lung adenocarcinoma implicates RNA editing in cancer innate immunity and patient prognosis
Tracey W Chan, Jack P. Dodson, J. Arbet, P. Boutros +1 more
2022Cancer Research17 citations Open access
Semantic Scholar
Serological abnormalities that predict progression to systemic autoimmune rheumatic diseases in antinuclear antibody positive individuals.
C. Muñoz-Grajales, S. Prokopec, S. Johnson, Z. Touma +7 more
2021Rheumatology16 citations Open access
Semantic Scholar
Introduction and expression of PIK3CAE545K in a papillary thyroid cancer BRAFV600E cell line leads to a dedifferentiated aggressive phenotype
N. Pinto, Kara M. Ruicci, M. I. Khan, M. Shaikh +9 more
2022Journal of Otolaryngology - Head and Neck Surgery15 citations Open access
Semantic Scholar
Reorganization of the 3D Genome Pinpoints Noncoding Drivers of Primary Prostate Tumors
James R. Hawley, Stanley Zhou, C. Arlidge, G. Grillo +7 more
2021Cancer Research14 citations Open access
Semantic Scholar
Prostate Cancer Reshapes the Secreted and Extracellular Vesicle Urinary Proteomes
Amanda S. Khoo, Meinusha Govindarajan, Zhu-Yu Qiu, Lydia Y. Liu +14 more
2023bioRxiv13 citations Open access
Semantic Scholar
Prospective Comparison of Restriction Spectrum Imaging and Non-Invasive Biomarkers to Predict Upgrading on Active Surveillance Prostate Biopsy
Stefan E. Eng, Benjamin Basasie, Alfonso Lam, O. Semmes +13 more
2022Prostate Cancer and Prostatic Diseases13 citations
Semantic Scholar
Minimal information for reporting a genomics experiment
K. Dreval, P. Boutros, Ryan D. Morin
2022Blood12 citations Open access
Semantic Scholar
Small variant benchmark from a complete assembly of X and Y chromosomes
Justin Wagner, N. Olson, Jennifer McDaniel, Lindsay Harris +23 more
2023bioRxiv9 citations Open access
Semantic Scholar
A polygenic two-hit hypothesis for prostate cancer.
Kathleen E. Houlahan, J. Livingstone, Natalie S. Fox, Natalie J. Kurganovs +17 more
2023Journal of the National Cancer Institute9 citations Open access
Semantic Scholar
Tumor molecular differences associated with outcome disparities of Black patients with head and neck cancer
H. Kim, Peter Y. F. Zeng, Alana Sorgini, M. Shaikh +13 more
2022Head and Neck9 citations Open access
Semantic Scholar
Decreased ATM Protein Expression Is Substantiated with PTEN Loss in Defining Aggressive Phenotype of Prostate Cancer Associated with Lethal Disease
S. Walker, R. Abdelsalam, Sunita Ghosh, J. Livingstone +5 more
2021European Urology Open Science9 citations Open access
Semantic Scholar
Prostate cancer transcriptomic regulation by the interplay of germline risk alleles, somatic mutations and 3D-genomic architecture
Jiapei Yuan, Kathleen E. Houlahan, S. Ramanand, Sora Lee +7 more
2022Cancer Discovery8 citations Open access
Semantic Scholar
Data-driven identification of inherent features of eukaryotic stress-responsive genes
Pablo Latorre, R. Böttcher, Mariona Nadal-Ribelles, Constance H. Li +5 more
2022NAR Genomics and Bioinformatics8 citations Open access
Semantic Scholar
Methylation subtypes of primary prostate cancer predict poor prognosis
Xiaoyu Wang, Kristina M. Jordahl, Chenghao Zhu, J. Livingstone +6 more
2022Cancer Epidemiology, Biomarkers and Prevention8 citations Open access
Semantic Scholar
Transcriptional perturbation of protein arginine methyltransferase-5 exhibits MTAP-selective oncosuppression
S. Busacca, Qi Zhang, A. Sharkey, A. Dawson +14 more
2021Scientific Reports8 citations Open access
Semantic Scholar
Fumarate Hydratase Variants and their Association with Paraganglioma/Pheochromocytoma.
Shirin Zavoshi, Eric Lu, P. Boutros, Liying Zhang +9 more
2023Urology7 citations Open access
Semantic Scholar
Health Economic Evidence for Liquid- and Tissue-based Molecular Tests that Inform Decisions on Prostate Biopsies and Treatment of Localised Prostate Cancer: A Systematic Review
K. Degeling, A. Pereira-Salgado, N. Corcoran, P. Boutros +2 more
2021European Urology Open Science7 citations Open access
Semantic Scholar
External Beam Radiotherapy With or Without Brachytherapy Boost in Men with Very High-Risk Prostate Cancer: A Large Multicenter International Consortium Analysis.
S. A. Patel, T. Ma, J. Wong, B. Stish +37 more
2022International Journal of Radiation Oncology, Biology, Physics6 citations
Semantic Scholar

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