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Rohan Maddamsetti · SciRah

Researcher profile · Semantic Scholar

Rohan Maddamsetti

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Rohan Maddamsetti — researcher profile on SciRah

h-index: 16
Works: 48
Citations: 1,503

Most-cited papers

A universal RNAi-based logic evaluator that operates in mammalian cells
Keller Rinaudo, Leonidas Bleris, Rohan Maddamsetti, Sairam Subramanian +2 more
2007Nature Biotechnology476 citations
Semantic Scholar
Adaptation, Clonal Interference, and Frequency-Dependent Interactions in a Long-Term Evolution Experiment with Escherichia coli
Rohan Maddamsetti, R. Lenski, Jeffrey E. Barrick
2015Genetics168 citations Open access
Semantic Scholar
Sustained fitness gains and variability in fitness trajectories in the long-term evolution experiment with Escherichia coli
Richard E. Lenski, Michael J. Wiser, Noah Ribeck, Z. Blount +18 more
2015bioRxiv136 citations Open access
Semantic Scholar
Duplicated antibiotic resistance genes reveal ongoing selection and horizontal gene transfer in bacteria
Rohan Maddamsetti, Yi Yao, Teng Wang, Junheng Gao +4 more
2024Nature Communications132 citations Open access
Semantic Scholar
Large-scale discovery of protein interactions at residue resolution using co-evolution calculated from genomic sequences
Anna G. Green, Hadeer Elhabashy, Kelly P. Brock, Rohan Maddamsetti +2 more
2021Nature Communications103 citations Open access
Semantic Scholar
Intra- and inter-population transposition of mobile genetic elements driven by antibiotic selection
Yi Yao, Rohan Maddamsetti, Andrea Weiss, Yuanchi Ha +3 more
2022Nature Ecology & Evolution95 citations
Semantic Scholar
Core Genes Evolve Rapidly in the Long-Term Evolution Experiment with Escherichia coli
Rohan Maddamsetti, P. Hatcher, Anna G. Green, B. Williams +2 more
2016bioRxiv57 citations Open access
Semantic Scholar
Genome-wide discovery of epistatic loci affecting antibiotic resistance in Neisseria gonorrhoeae using evolutionary couplings
B. Schubert, Rohan Maddamsetti, J. Nyman, M. Farhat +1 more
2018Nature Microbiology43 citations Open access
Semantic Scholar
Genomic and phenotypic evolution of Escherichia coli in a novel citrate-only resource environment
Z. Blount, Rohan Maddamsetti, Nkrumah A. Grant, Sumaya T. Ahmed +8 more
2020bioRxiv37 citations Open access
Semantic Scholar
Haplotype-Phased Synthetic Long Reads from Short-Read Sequencing
J. Stapleton, Jeongwoon Kim, J. Hamilton, Ming Wu +9 more
2015bioRxiv35 citations Open access
Semantic Scholar
Analysis of bacterial genomes from an evolution experiment with horizontal gene transfer shows that recombination can sometimes overwhelm selection
Rohan Maddamsetti, R. Lenski
2017bioRxiv32 citations Open access
Semantic Scholar
Phylogenomic analysis of the uracil-DNA glycosylase superfamily.
J. I. Lucas-Lledó, Rohan Maddamsetti, M. Lynch
2011Molecular biology and evolution29 citations Open access
Semantic Scholar
Divergent Evolution of Mutation Rates and Biases in the Long-Term Evolution Experiment with Escherichia coli
Rohan Maddamsetti, Nkrumah A. Grant
2020bioRxiv25 citations Open access
Semantic Scholar
Scaling laws of bacterial and archaeal plasmids
Rohan Maddamsetti, Irida Shyti, Maggie L. Wilson, Hye-in Son +4 more
2025Nature Communications21 citations Open access
Semantic Scholar
Synonymous Genetic Variation in Natural Isolates of Escherichia coli Does Not Predict Where Synonymous Substitutions Occur in a Long-Term Experiment
Rohan Maddamsetti, P. Hatcher, S. Cruveiller, C. Médigue +2 more
2015Molecular biology and evolution21 citations Open access
Semantic Scholar
Gain‐of‐function experiments with bacteriophage lambda uncover residues under diversifying selection in nature
Rohan Maddamsetti, Daniel T. Johnson, S. Spielman, K. L. Petrie +2 more
2018Evolution; international journal of organic evolution18 citations Open access
Semantic Scholar
Maintenance of Metabolic Plasticity Despite Relaxed Selection in a Long-Term Evolution Experiment with Escherichia coli
Nkrumah A. Grant, Rohan Maddamsetti, R. Lenski
2020bioRxiv10 citations Open access
Semantic Scholar
Programming dynamic division of labor using horizontal gene transfer
Grayson S. Hamrick, Rohan Maddamsetti, Hye-in Son, Maggie L. Wilson +2 more
2024ACS Synthetic Biology7 citations Open access
Semantic Scholar
Selection Maintains Protein Interactome Resilience in the Long-Term Evolution Experiment with Escherichia coli
Rohan Maddamsetti
2021bioRxiv7 citations Open access
Semantic Scholar
Universal Constraints on Protein Evolution in the Long-Term Evolution Experiment with Escherichia coli
Rohan Maddamsetti
2020bioRxiv7 citations Open access
Semantic Scholar
Proteome-scale discovery of protein interactions with residue-level resolution using sequence coevolution
Anna G. Green, Hadeer Elhabashy, Kelly P. Brock, Rohan Maddamsetti +2 more
2019bioRxiv6 citations Open access
Semantic Scholar
A predatory gene drive for targeted control of self-transmissible plasmids
Ryan Tsoi, Hye-in Son, Grayson S. Hamrick, Katherine Tang +4 more
2025Science Advances5 citations Open access
Semantic Scholar
Scaling laws of plasmids across the microbial tree of life
Rohan Maddamsetti, Maggie L. Wilson, Hye-in Son, Zheng-Qing Zhou +2 more
2024bioRxiv5 citations
Semantic Scholar
Discovery of positive and purifying selection in metagenomic time series of hypermutator microbial populations
Rohan Maddamsetti, Nkrumah A. Grant
2022bioRxiv5 citations Open access
Semantic Scholar
A simple test to infer mode of selection in metagenomics time series of evolving asexual populations
Rohan Maddamsetti, Nkrumah A. Grant
20205 citations Open access
Semantic Scholar
Genome-wide discovery of epistatic loci affecting antibiotic resistance using evolutionary couplings
B. Schubert, Rohan Maddamsetti, J. Nyman, M. Farhat +1 more
2018bioRxiv5 citations Open access
Semantic Scholar
Gene flow in microbial communities could explain unexpected patterns of synonymous variation in the Escherichia coli core genome
Rohan Maddamsetti
2016Mobile Genetic Elements4 citations Open access
Semantic Scholar
Integrating theory and machine learning to reveal determinants of plasmid copy number
Iqra Shahzadi, Wenzhi Xue, Hasan Ubaid Ullah, Rohan Maddamsetti +2 more
2025bioRxiv3 citations Open access
Semantic Scholar
Programming dynamic division of labor using horizontal gene transfer
Grayson S. Hamrick, Rohan Maddamsetti, Hye-in Son, Maggie L. Wilson +2 more
2023bioRxiv3 citations Open access
Semantic Scholar
Horizontal gene transfer may explain variation in {\theta}s
Rohan Maddamsetti, P. Hatcher, S. Cruveiller, C. Médigue +2 more
20122 citations
Semantic Scholar
HaloMPNN: retraining ProteinMPNN on halophilic proteomes for salt-tolerant enzyme design
A. Lee, Austin Seamann, Gwendolyn Chung, Clairie Zhao +2 more
2026bioRxiv1 citations Open access
Semantic Scholar
Transposon-plasmid nesting enables fast response to fluctuating environments
Yuanchi Ha, Rohan Maddamsetti, Xiao-Li Chen, E. Şimşek +5 more
2025bioRxiv1 citations Open access
Semantic Scholar
The Abundance of Viroid-Like RNA Obelisk-S.s in Streptococcus sanguinis SK36 May Suffice for Evolutionary Persistence
Rohan Maddamsetti, Ling-Chong You
2025Journal of Molecular Evolution1 citations
Semantic Scholar
Circular RNA Obelisk-S.s is highly abundant in Streptococcus sanguinis SK36
Rohan Maddamsetti, Ling-Chong You
2024bioRxiv1 citations Open access
Semantic Scholar
Idiosyncratic Purifying Selection on Metabolic Enzymes in the Long-Term Evolution Experiment with Escherichia coli
Rohan Maddamsetti
2021bioRxiv1 citations Open access
Semantic Scholar
Gene circuit-driven amplified selection enables evolution of fast-growing Escherichia coli
Grayson S. Hamrick, Hye-in Son, Rohan Maddamsetti, Zheng-Qing Zhou +12 more
2026bioRxiv0 citations Open access
Semantic Scholar
Parallel evolution of chimeric genes in microbial evolution experiments
Rohan Maddamsetti, Mehmet Orman
2026bioRxiv0 citations Open access
Semantic Scholar
Zero-shot ecological annotation of microbial genomes with myLLannotator accelerates scientific discovery
A. Lee, Aryan Sharma, Rohan Maddamsetti
2026bioRxiv0 citations
Semantic Scholar
A foundation model for microbial growth dynamics
Zachary A. Holmes, Irida Shyti, Alexandra Hoffman, Katherine E. Duncker +27 more
2025bioRxiv0 citations Open access
Semantic Scholar
Emergence of population-level feedback control by transposon-plasmid coevolution
Rohan Maddamsetti, Grayson S. Hamrick, Yuanchi Ha, Yasa Baig +3 more
2025bioRxiv0 citations
Semantic Scholar
Contrasting Tick Species Behaviors: A Course-based Undergraduate Research Experience (CURE)
Sara Benham, Shovan Dutta, Rohan Maddamsetti, C. Wright +3 more
2024Spora A Journal of Biomathematics0 citations Open access
Semantic Scholar
Discovery of interpretable patterning rules by integrating mechanistic modeling and deep learning
Jia Lu, Nan Luo, Si-Zhe Liu, Kinshuk Sahu +3 more
2024bioRxiv0 citations
Semantic Scholar
Author response: Genomic and phenotypic evolution of Escherichia coli in a novel citrate-only resource environment
Z. Blount, Rohan Maddamsetti, Nkrumah A. Grant, Sumaya T. Ahmed +8 more
20200 citations Open access
Semantic Scholar
Parallels and promising directions in the study of genetic, cultural, and moral evolution
Rohan Maddamsetti, Jacob S. Bower-Bir
20180 citations
Semantic Scholar
Viral gain-of-function experiments uncover residues under diversifying selection in nature
Rohan Maddamsetti, Daniel T. Johnson, S. Spielman, K. L. Petrie +2 more
2018bioRxiv0 citations Open access
Semantic Scholar
Evolution of laboratory and natural populations of Escherichia coli
Rohan Maddamsetti
20160 citations
Semantic Scholar
Design and optimization of an RNAi based biomolecular logic circuit
Leonidas Bleris, Keller Rinaudo, Rohan Maddamsetti, Sairam Subramanian +2 more
20080 citations
Semantic Scholar
Spora: A Journal of Biomathematics Spora: A Journal of Biomathematics
Sara Benham, Shovan Dutta, Rohan Maddamsetti, C. Wright +4 more
0 citations
Semantic Scholar

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Nkrumah A. Grant×7
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