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Aaron D. Hernday · SciRah

Researcher profile · Semantic Scholar

Aaron D. Hernday

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Aaron D. Hernday — researcher profile on SciRah

h-index: 23
Works: 44
Citations: 3,716

Most-cited papers

A Recently Evolved Transcriptional Network Controls Biofilm Development in Candida albicans
Clarissa J. Nobile, Emily P. Fox, J. Nett, Trevor R. Sorrells +5 more
2012Cell700 citations Open access
Semantic Scholar
Contact-Dependent Inhibition of Growth in Escherichia coli
Stephanie K. Aoki, R. Pamma, Aaron D. Hernday, J. Bickham +2 more
2005Science430 citations
Semantic Scholar
Biofilm Matrix Regulation by Candida albicans Zap1
Clarissa J. Nobile, J. Nett, Aaron D. Hernday, O. Homann +5 more
2009PLoS Biology339 citations Open access
Semantic Scholar
Efficient Multiplexed Integration of Synergistic Alleles and Metabolic Pathways in Yeasts via CRISPR-Cas.
Andrew A. Horwitz, Jessica M. Walter, Max G. Schubert, S. Kung +7 more
2015Cell Systems290 citations Open access
Semantic Scholar
The Evolution of Combinatorial Gene Regulation in Fungi
B. Tuch, David J. Galgoczy, Aaron D. Hernday, Hao Li +1 more
2008PLoS Biology251 citations Open access
Semantic Scholar
The Transcriptomes of Two Heritable Cell Types Illuminate the Circuit Governing Their Differentiation
B. Tuch, Quinn M. Mitrovich, O. Homann, Aaron D. Hernday +3 more
2010PLoS Genetics155 citations Open access
Semantic Scholar
Self-perpetuating epigenetic pili switches in bacteria
Aaron D. Hernday, M. Krabbe, B. Braaten, D. Low
2002Proceedings of the National Academy of Sciences of the United States of America155 citations Open access
Semantic Scholar
The mechanism by which DNA adenine methylase and PapI activate the pap epigenetic switch.
Aaron D. Hernday, B. Braaten, D. Low
2003Molecules and Cells138 citations Open access
Semantic Scholar
Structure of the Transcriptional Network Controlling White-Opaque Switching in Candida albicans
Aaron D. Hernday, M. Lohse, P. M. Fordyce, Clarissa J. Nobile +2 more
2013Molecular Microbiology136 citations Open access
Semantic Scholar
White-Opaque Switching in Natural MTLa/α Isolates of Candida albicans: Evolutionary Implications for Roles in Host Adaptation, Pathogenesis, and Sex
Jing Xie, Li Tao, Clarissa J. Nobile, Yao-Jun Tong +8 more
2013PLoS Biology135 citations Open access
Semantic Scholar
An Efficient, Rapid, and Recyclable System for CRISPR-Mediated Genome Editing in Candida albicans
Namkha Nguyen, Morgan M. Quail, Aaron D. Hernday
2017Msphere124 citations Open access
Semantic Scholar
Candida albicans White and Opaque Cells Undergo Distinct Programs of Filamentous Growth
Haoyu Si, Aaron D. Hernday, M. Hirakawa, Alexander D. Johnson +1 more
2013PLoS Pathogens92 citations Open access
Semantic Scholar
Regulation of the pap epigenetic switch by CpxAR: phosphorylated CpxR inhibits transition to the phase ON state by competition with Lrp.
Aaron D. Hernday, B. Braaten, G. Broitman-Maduro, P. Engelberts +1 more
2004Molecules and Cells90 citations Open access
Semantic Scholar
Transcriptional control of hyphal morphogenesis in Candida albicans
S. Villa, Mohammad Hamideh, Anthony Weinstock, Mohammad N Qasim +4 more
2020FEMS Yeast Research87 citations Open access
Semantic Scholar
Genetics and molecular biology in Candida albicans.
Aaron D. Hernday, S. Noble, Quinn M. Mitrovich, Alexander D. Johnson
2010Methods in Enzymology79 citations
Semantic Scholar
Identification and characterization of a previously undescribed family of sequence-specific DNA-binding domains
M. Lohse, Aaron D. Hernday, P. M. Fordyce, Liron Noiman +5 more
2013Proceedings of the National Academy of Sciences of the United States of America76 citations Open access
Semantic Scholar
The intricate workings of a bacterial epigenetic switch.
Aaron D. Hernday, B. Braaten, D. Low
2004Advances in Experimental Medicine and Biology69 citations
Semantic Scholar
Epigenetic Cell Fate in Candida albicans is Controlled by Transcription Factor Condensates Acting at Super-Enhancer-Like Elements
C. Frazer, Mae I. Staples, Yoori Kim, M. Hirakawa +7 more
2020Nature Microbiology48 citations Open access
Semantic Scholar
Transcriptional Circuits Regulating Developmental Processes in Candida albicans
D. L. Rodriguez, Morgan M. Quail, Aaron D. Hernday, Clarissa J. Nobile
2020Frontiers in Cellular and Infection Microbiology43 citations Open access
Semantic Scholar
Ssn6 Defines a New Level of Regulation of White-Opaque Switching in Candida albicans and Is Required For the Stochasticity of the Switch
Aaron D. Hernday, M. Lohse, Clarissa J. Nobile, Liron Noiman +2 more
2016mBio39 citations Open access
Semantic Scholar
Systematic Genetic Screen for Transcriptional Regulators of the Candida albicans White-Opaque Switch
M. Lohse, I. Ene, Veronica Craik, Aaron D. Hernday +4 more
2016Genetics32 citations Open access
Semantic Scholar
N-Acetylglucosamine (GlcNAc) Sensing, Utilization, and Functions in Candida albicans
Han Du, Craig L Ennis, Aaron D. Hernday, Clarissa J. Nobile +1 more
2020Journal of Fungi28 citations Open access
Semantic Scholar
Monitoring Phenotypic Switching in Candida albicans and the Use of Next-Gen Fluorescence Reporters
C. Frazer, Aaron D. Hernday, Richard J. Bennett
2019Current Protocols in Microbiology26 citations Open access
Semantic Scholar
A Markerless CRISPR-Mediated System for Genome Editing in Candida auris Reveals a Conserved Role for Cas5 in the Caspofungin Response
Craig L Ennis, Aaron D. Hernday, Clarissa J. Nobile
2021Microbiology spectrum21 citations Open access
Semantic Scholar
STOCHASTIC MODELING OF THE PAP PILI EPIGENETIC SWITCH
B. Munsky, Aaron D. Hernday, D. Low, M. Khammash
200520 citations
Semantic Scholar
The Roles of Chromatin Accessibility in Regulating the Candida albicans White-Opaque Phenotypic Switch
Mohammad N Qasim, Ashley Valle Arevalo, Clarissa J. Nobile, Aaron D. Hernday
2021Journal of Fungi15 citations Open access
Semantic Scholar
Unraveling How Candida albicans Forms Sexual Biofilms
Austin M. Perry, Aaron D. Hernday, Clarissa J. Nobile
2020Journal of Fungi14 citations Open access
Semantic Scholar
The transcriptional network controlling biofilm development in Candida albicans
Clarissa J. Nobile, Emily P. Fox, J. Nett, Quinn M. Mitrovich +4 more
201213 citations
Semantic Scholar
Triazine-Based Small Molecules: A Potential New Class of Compounds in the Antifungal Toolbox
K. Conrad, Hyunjeong Kim, Mohammad N Qasim, Amel Djehal +3 more
2023Pathogens10 citations Open access
Semantic Scholar
AddTag, a two-step approach with supporting software package that facilitates CRISPR/Cas-mediated precision genome editing
Thaddeus D Seher, Namkha Nguyen, Diana Ramos, Priya Bapat +3 more
2021G310 citations Open access
Semantic Scholar
Genome-wide Profiling of Transcription Factor-DNA Binding Interactions in Candida albicans: A Comprehensive CUT&RUN Method and Data Analysis Workflow
Mohammad N Qasim, Ashley Valle Arevalo, Akshay D. Paropkari, Craig L Ennis +3 more
2022Journal of Visualized Experiments8 citations Open access
Semantic Scholar
Whole RNA-Sequencing and Transcriptome Assembly of Candida albicans and Candida africana under Chlamydospore-Inducing Conditions
D. Giosa, M. R. Felice, Travis J. Lawrence, M. Gulati +9 more
2017Genome Biology and Evolution7 citations Open access
Semantic Scholar
The combinatorial action of hyphal growth and candidalysin is critical for promoting Candida albicans oropharyngeal infection
Olivia K. A. Paulin, Antzela Tsavou, Emily L Priest, James S. Griffiths +10 more
2025mBio6 citations Open access
Semantic Scholar
The bacillithiol pathway is required for biofilm formation in Staphylococcus aureus.
M. Gulati, Jason M. Thomas, Craig L Ennis, Aaron D. Hernday +2 more
2024Microbial Pathogenesis6 citations Open access
Semantic Scholar
A systematic comparison of CRISPR-Cas9 allele editing in Candida auris demonstrates unreliable cassette integration and effective episomal plasmid-based editing
Dimitrios Sofras, Hans Carolus, Ana Subotić, Celia Lobo Romero +7 more
2025Scientific Reports5 citations Open access
Semantic Scholar
Inferring gene regulatory networks using transcriptional profiles as dynamical attractors
Ruihao Li, Jordan C. Rozum, Morgan M. Quail, Mohammad N Qasim +4 more
2023bioRxiv5 citations Open access
Semantic Scholar
Identi ﬁ cation and characterization of a previously undescribed family of sequence-speci ﬁ c DNA-binding domains
M. Lohse, Aaron D. Hernday, P. M. Fordyce, Liron Noiman +6 more
5 citations
Semantic Scholar
Mitochondrial targeting of Candida albicans SPFH proteins and requirement of stomatins for SDS-induced stress tolerance
Hyunjeong Kim, Marienela Y. Heredia, Xiao Chen, Maisha Ahmed +4 more
2024Microbiology spectrum4 citations Open access
Semantic Scholar
Genome-Wide Chromatin Immunoprecipitation in Candida albicans and Other Yeasts
M. Lohse, Pisiwat Kongsomboonvech, Maria Madrigal, Aaron D. Hernday +1 more
2016Methods in molecular biology4 citations Open access
Semantic Scholar
Method for Multiplexed Integration of Synergistic Alleles and Metabolic Pathways in Yeasts via CRISPR-Cas9.
Jessica M. Walter, Max G. Schubert, S. Kung, Kristy M. Hawkins +7 more
2019Methods in molecular biology3 citations
Semantic Scholar
A comparative evaluation of CRISPR-Cas9 allele editing systems in Candida auris: challenging research in a challenging bug
Dimitrios Sofras, Hans Carolus, Ana Subotić, Celia Lobo Romero +5 more
2025bioRxiv1 citations Open access
Semantic Scholar
Delineating the Concerted Action of Virulence Attributes in Candida albicans Systemic Infection
Olivia K. A. Paulin, Xiao-Li Xu, Shu-Chen Chong, Eve W. L. Chow +5 more
2026Journal of Cellular and Molecular Medicine0 citations Open access
Semantic Scholar
Epigenetic cell fate in Candida albicans is controlled by trascription factor condensates acting at super-enhancer-like elements
C. Frazer, Mae I. Staples, Yoori Kim, M. Hirakawa +2 more
20210 citations
Semantic Scholar
Atomic Force Microscopy Study of Lrp Protein-DNA Interaction at the Solid-Liquid Interface.
S. Toyoda, Lin K Duong, K. Stella, Aaron D. Hernday +1 more
20000 citations
Semantic Scholar

Frequent co-authors

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Clarissa J. Nobile×21
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Clarissa J. Nobile — researcher profile on SciRah
Alexander D. Johnson×10
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Alexander D. Johnson — researcher profile on SciRah
D. Low×6
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D. Low — researcher profile on SciRah
M. Lohse×6
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M. Lohse — researcher profile on SciRah

Mohammad N Qasim

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Mohammad N Qasim — researcher profile on SciRah

Craig L Ennis×6

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Craig L Ennis — researcher profile on SciRah

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B. Braaten — researcher profile on SciRah

Quinn M. Mitrovich×4

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Quinn M. Mitrovich — researcher profile on SciRah

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B. Tuch — researcher profile on SciRah

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J. Nett — researcher profile on SciRah

Trevor R. Sorrells×3

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Trevor R. Sorrells — researcher profile on SciRah

P. M. Fordyce×3

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P. M. Fordyce — researcher profile on SciRah