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R. Dirks · SciRah

Researcher profile · Semantic Scholar

R. Dirks

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R. Dirks — researcher profile on SciRah

h-index: 29
Works: 100
Citations: 3,312

Most-cited papers

The king cobra genome reveals dynamic gene evolution and adaptation in the snake venom system
F. Vonk, N. Casewell, C. Henkel, A. Heimberg +32 more
2013Proceedings of the National Academy of Sciences of the United States of America445 citations Open access
Semantic Scholar
A DNAJB chaperone subfamily with HDAC-dependent activities suppresses toxic protein aggregation.
J. Hageman, M. Rujano, M. A. V. van Waarde, Vaishali Kakkar +5 more
2010Molecules and Cells427 citations Open access
Semantic Scholar
Primitive Duplicate Hox Clusters in the European Eel's Genome
C. Henkel, E. Burgerhout, Daniëlle L. de Wijze, R. Dirks +7 more
2012PLoS ONE152 citations Open access
Semantic Scholar
A High-Throughput Screen for Tuberculosis Progression
R. Carvalho, Jan de Sonneville, Oliver W. Stockhammer, N. Savage +5 more
2011PLoS ONE138 citations Open access
Semantic Scholar
Urochordate βγ-Crystallin and the Evolutionary Origin of the Vertebrate Eye Lens
S. Shimeld, A. Purkiss, R. Dirks, O. Bateman +2 more
2005119 citations Open access
Semantic Scholar
Rapid de novo assembly of the European eel genome from nanopore sequencing reads
H. Jansen, M. Liem, S. Jong-Raadsen, S. Dufour +9 more
2017Scientific Reports115 citations Open access
Semantic Scholar
Robotic injection of zebrafish embryos for high-throughput screening in disease models.
H. Spaink, C. Cui, M. Wiweger, H. Jansen +10 more
2013Methods111 citations Open access
Semantic Scholar
First draft genome sequence of the Japanese eel, Anguilla japonica.
C. Henkel, R. Dirks, Daniëlle L. de Wijze, Yuki Minegishi +13 more
2012Gene105 citations Open access
Semantic Scholar
A 180 Myr-old female-specific genome region in sturgeon reveals the oldest known vertebrate sex determining system with undifferentiated sex chromosomes
H. Kuhl, Y. Guiguen, Christin Höhne, Eva Kreuz +23 more
2021Philosophical Transactions of the Royal Society of London. Biological Sciences85 citations Open access
Semantic Scholar
Comparison of the Exomes of Common Carp (Cyprinus carpio) and Zebrafish (Danio rerio)
C. Henkel, R. Dirks, H. Jansen, M. Forlenza +4 more
2012Zebrafish85 citations Open access
Semantic Scholar
Genome structures resolve the early diversification of teleost fishes
Elise Parey, Alexandra Louis, J. Montfort, O. Bouchez +26 more
2022bioRxiv78 citations Open access
Semantic Scholar
Multiple Kisspeptin Receptors in Early Osteichthyans Provide New Insights into the Evolution of This Receptor Family
Jérémy Pasquier, A. Lafont, S. Jeng, M. Morini +7 more
2012PLoS ONE61 citations Open access
Semantic Scholar
Testing Tuberculosis Drug Efficacy in a Zebrafish High-Throughput Translational Medicine Screen
A. Ordas, R. Raterink, F. Cunningham, H. Jansen +11 more
2014Antimicrobial Agents and Chemotherapy59 citations Open access
Semantic Scholar
Urochordate betagamma-crystallin and the evolutionary origin of the vertebrate eye lens.
S. Shimeld, A. Purkiss, R. Dirks, O. Bateman +2 more
2005Current Biology59 citations
Semantic Scholar
Schooling reduces energy consumption in swimming male European eels, Anguilla anguilla L.
E. Burgerhout, C. Tudorache, Sebastiaan A. Brittijn, A. Palstra +2 more
201356 citations Open access
Semantic Scholar
Transcriptomic analysis of immunity in rainbow trout (Oncorhynchus mykiss) gills infected by Ichthyophthirius multifiliis
K. Syahputra, P. Kania, A. Al-Jubury, Rzgar M. Jafaar +2 more
2019Fish and Shellfish Immunology55 citations
Semantic Scholar
A full-body transcriptome and proteome resource for the European common carp
I. Kolder, S. J. van der Plas-Duivesteijn, G. Tan, G. Wiegertjes +14 more
2016BMC Genomics47 citations Open access
Semantic Scholar
An Atypical Unfolded Protein Response in Heat Shocked Cells
L. Heldens, Sanne M. M. Hensen, Carla Onnekink, S. van Genesen +2 more
2011PLoS ONE46 citations Open access
Semantic Scholar
First artificial hybrid of the eel species Anguilla australis and Anguilla anguilla
E. Burgerhout, Sebastiaan A. Brittijn, Tagried Kurwie, P. Decker +4 more
2011BMC Developmental Biology43 citations Open access
Semantic Scholar
Physiological Effects of Water Flow Induced Swimming Exercise in Seabream Sparus aurata
A. Palstra, A. Roque, L. Kruijt, P. Jéhannet +2 more
2020Frontiers in Physiology42 citations Open access
Semantic Scholar
Duplicated Leptin Receptors in Two Species of Eel Bring New Insights into the Evolution of the Leptin System in Vertebrates
M. Morini, Jérémy Pasquier, R. Dirks, G. van den Thillart +4 more
2015PLoS ONE41 citations Open access
Semantic Scholar
Acting locally - affecting globally: RNA sequencing of gilthead sea bream with a mild Sparicotyle chrysophrii infection reveals effects on apoptosis, immune and hypoxia related genes
M. C. Piazzon, I. Mladineo, Fernando Naya-Català, R. Dirks +5 more
2019BMC Genomics39 citations Open access
Semantic Scholar
Functional divergence of thyrotropin beta-subunit paralogs gives new insights into salmon smoltification metamorphosis
M. Fleming, Gersende Maugars, A. Lafont, J. Rancon +9 more
2019Scientific Reports37 citations Open access
Semantic Scholar
Application of Caenorhabditis elegans (nematode) and Danio rerio embryo (zebrafish) as model systems to screen for developmental and reproductive toxicity of Piperazine compounds.
Peter I. Racz, M. Wildwater, M. Rooseboom, E. Kerkhof +6 more
2017Toxicology in Vitro34 citations Open access
Semantic Scholar
Differential neuroendocrine expression of multiple brain-derived neurotrophic factor transcripts.
A. H. Kidane, G. Heinrich, R. Dirks, Brechje A. de Ruyck +3 more
2009Endocrinology34 citations Open access
Semantic Scholar
Co-chaperones are limiting in a depleted chaperone network
L. Heldens, R. Dirks, Sanne M. M. Hensen, Carla Onnekink +3 more
2010Cellular and Molecular Life Sciences33 citations Open access
Semantic Scholar
Advances in genomics of bony fish
H. Spaink, H. Jansen, R. Dirks
2013Briefings in Functional Genomics32 citations Open access
Semantic Scholar
Genomic and transcriptomic approaches to study immunology in cyprinids: What is next?
J. Petit, L. David, R. Dirks, G. Wiegertjes
2017Developmental and Comparative Immunology30 citations Open access
Semantic Scholar
Immunomodulatory Effects of Dietary Seaweeds in LPS Challenged Atlantic Salmon Salmo salar as Determined by Deep RNA Sequencing of the Head Kidney Transcriptome
A. Palstra, J. Kals, Ainhoa Blanco Garcia, R. Dirks +1 more
2018Frontiers in Physiology29 citations Open access
Semantic Scholar
Signals controlling the expression of PDGF
R. Dirks, H. P. Bloemers
2004Molecular Biology Reports28 citations Open access
Semantic Scholar
Temperature modulates testis steroidogenesis in European eel.
D. Peñaranda, M. Morini, H. Tveiten, M. Vílchez +5 more
2016Comparative biochemistry and physiology. Part A, Molecular & integrative physiology26 citations Open access
Semantic Scholar
Identifying Genes Involved in Alkaloid Biosynthesis in Vinca minor through Transcriptomics and Gene Co-Expression Analysis
Emily Amor Stander, L. Sepúlveda, Thomas Dugé de Bernonville, I. Carqueijeiro +11 more
2020Biomolecules22 citations Open access
Semantic Scholar
Deep transcriptome analysis of the heat shock response in an Atlantic sturgeon (Acipenser oxyrinchus) cell line
E. Yebra-Pimentel, M. Gebert, H. Jansen, S. Jong-Raadsen +1 more
2019Fish and Shellfish Immunology22 citations Open access
Semantic Scholar
Simulated migration under mimicked photothermal conditions enhances sexual maturation of farmed European eel (Anguilla anguilla)
D. Mes, R. Dirks, A. Palstra
201622 citations Open access
Semantic Scholar
Changes in ovarian gene expression profiles and plasma hormone levels in maturing European eel (Anguilla anguilla); Biomarkers for broodstock selection.
E. Burgerhout, Yuki Minegishi, Sebastiaan A. Brittijn, Danielle L. de Wijze +5 more
2016General and Comparative Endocrinology22 citations Open access
Semantic Scholar
Sequence and Functional Conservation of the Intergenic Region Between the Head-to-Head Genes Encoding the Small Heat Shock Proteins αB-Crystallin and HspB2 in the Mammalian Lineage
L. Doerwald, Teun van Rheede, R. Dirks, O. Madsen +5 more
2004Journal of Molecular Evolution22 citations
Semantic Scholar
Genome and transcriptome analysis of the beet armyworm Spodoptera exigua reveals targets for pest control
Sabrina Simon, T. Breeschoten, H. Jansen, R. Dirks +2 more
2021bioRxiv21 citations Open access
Semantic Scholar
Comparative Therapeutic Effects of Natural Compounds Against Saprolegnia spp. (Oomycota) and Amyloodinium ocellatum (Dinophyceae)
P. Tedesco, P. Beraldo, Michela Massimo, M. Fioravanti +3 more
2020Frontiers in Veterinary Science21 citations Open access
Semantic Scholar
Anguillicola crassus Infection Significantly Affects the Silvering Related Modifications in Steady State mRNA Levels in Gas Gland Tissue of the European Eel
B. Pelster, Gabriel Schneebauer, R. Dirks
2016Frontiers in Physiology21 citations Open access
Semantic Scholar
Warfarin-exposed zebrafish embryos resembles human warfarin embryopathy in a dose and developmental-time dependent manner - From molecular mechanisms to environmental concerns.
L. Granadeiro, R. Dirks, J. Ortiz-Delgado, P. Gavaia +4 more
2019Ecotoxicology and Environmental Safety20 citations Open access
Semantic Scholar
The Olfactory Transcriptome and Progression of Sexual Maturation in Homing Chum Salmon Oncorhynchus keta
A. Palstra, Kosuke Fukaya, Hiroaki Chiba, R. Dirks +2 more
2015PLoS ONE20 citations Open access
Semantic Scholar
Parallel deep transcriptome and proteome analysis of zebrafish larvae
Magnus Palmblad, C. Henkel, R. Dirks, A. Meijer +2 more
2013BMC Research Notes20 citations Open access
Semantic Scholar
Transcriptomic analysis of Baltic cod (Gadus morhua) liver infected with Contracaecum osculatum third stage larvae indicates parasitic effects on growth and immune response.
H. Marnis, P. Kania, K. Syahputra, S. Zuo +2 more
2019Fish and Shellfish Immunology18 citations
Semantic Scholar
Interactions between the Parasite Philasterides dicentrarchi and the Immune System of the Turbot Scophthalmus maximus. A Transcriptomic Analysis
A. Valle, J. Leiro, P. Pereiro, A. Figueras +3 more
2020Biology17 citations Open access
Semantic Scholar
Cortisol Acting Through the Glucocorticoid Receptor Is Not Involved in Exercise-Enhanced Growth, But Does Affect the White Skeletal Muscle Transcriptome in Zebrafish (Danio rerio)
A. Palstra, Silvia Mendez, R. Dirks, Marcel J. M. Schaaf
2019Frontiers in Physiology17 citations Open access
Semantic Scholar
Anguillicola crassus infection affects mRNA expression levels in gas gland tissue of European yellow and silver eel
Gabriel Schneebauer, R. Dirks, B. Pelster
2017PLoS ONE17 citations Open access
Semantic Scholar
Identification of molecular markers in pectoral fin to predict artificial maturation of female European eels (Anguilla anguilla).
R. Dirks, E. Burgerhout, Sebastiaan A. Brittijn, Danielle L. de Wijze +6 more
2014General and Comparative Endocrinology17 citations Open access
Semantic Scholar
Extralenticular expression of the rodent βB2-crystallin gene
R. Dirks, S. van Genesen, J. Kruse, L. Jorissen +1 more
199817 citations
Semantic Scholar
An updated version of the Madagascar periwinkle genome
Clément Cuello, Emily Amor Stander, H. Jansen, Thomas Dugé de Bernonville +10 more
2022F1000Research16 citations Open access
Semantic Scholar
Differential gene expression in narrow‐ and broad‐headed European glass eels (Anguilla anguilla) points to a transcriptomic link of head shape dimorphism with growth rate and chemotaxis
J. De Meyer, G. Maes, R. Dirks, D. Adriaens
2017Molecular Ecology16 citations
Semantic Scholar

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