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H. Spaink · SciRah

Researcher profile · Semantic Scholar

H. Spaink

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H. Spaink — researcher profile on SciRah

h-index: 79
Works: 360
Citations: 21K

Most-cited papers

Editorial :Guidelines for the use and interpretation of assays for monitoring autophagy (3rd edition). DOI: 10.1080/15548627.2015.1100356;WOS:000373595400001; 2-s2.0-85013763791&;PMID: 26799652
D. Klionsky, K. Abdelmohsen, A. Abe, M. Abedin +496 more
20161,544 citations Open access
Semantic Scholar
Giant lungfish genome elucidates the conquest of land by vertebrates
A. Meyer, S. Schloissnig, P. Franchini, K. Du +15 more
2021Nature188 citations Open access
Semantic Scholar
Polarization of immune responses in fish: The 'macrophages first' point of view.
G. Wiegertjes, Annelieke S. Wentzel, H. Spaink, P. Elks +1 more
2016Molecular Immunology153 citations Open access
Semantic Scholar
Macrophage-pathogen interactions in infectious diseases: new therapeutic insights from the zebrafish host model
V. Torraca, S. Masud, H. Spaink, A. Meijer
2014Disease Models & Mechanisms141 citations Open access
Semantic Scholar
Drug Resistance in Nontuberculous Mycobacteria: Mechanisms and Models
S. Saxena, H. Spaink, G. Forn-Cuní
2021Biology137 citations Open access
Semantic Scholar
The CXCR3-CXCL11 signaling axis mediates macrophage recruitment and dissemination of mycobacterial infection
V. Torraca, C. Cui, Ralf Boland, J. Bebelman +5 more
2015Disease Models & Mechanisms130 citations Open access
Semantic Scholar
Rapid de novo assembly of the European eel genome from nanopore sequencing reads
H. Jansen, M. Liem, S. Jong-Raadsen, S. Dufour +9 more
2017Scientific Reports115 citations Open access
Semantic Scholar
Expression of distinct maternal and somatic 5.8S, 18S, and 28S rRNA types during zebrafish development
M. Locati, Johanna F. B. Pagano, G. Girard, W. Ensink +8 more
2017RNA: A publication of the RNA Society110 citations Open access
Semantic Scholar
Intestinal microbiome adjusts the innate immune setpoint during colonization through negative regulation of MyD88
Bjørn E. V. Koch, Shu-Xin Yang, G. Lamers, J. Stougaard +1 more
2018Nature Communications91 citations Open access
Semantic Scholar
Comparative studies of Toll-like receptor signalling using zebrafish.
Z. Kanwal, G. Wiegertjes, Wouter J. Veneman, A. Meijer +1 more
2014Developmental and Comparative Immunology88 citations Open access
Semantic Scholar
RNAseq Profiling of Leukocyte Populations in Zebrafish Larvae Reveals a cxcl11 Chemokine Gene as a Marker of Macrophage Polarization During Mycobacterial Infection
Julien Rougeot, V. Torraca, A. Zakrzewska, Z. Kanwal +4 more
2019bioRxiv87 citations Open access
Semantic Scholar
Identification of a Novel Conjugative Plasmid in Mycobacteria That Requires Both Type IV and Type VII Secretion
R. Ummels, A. M. Abdallah, V. Kuiper, A. Aâjoud +6 more
2014mBio83 citations Open access
Semantic Scholar
Swimming-induced exercise promotes hypertrophy and vascularization of fast skeletal muscle fibres and activation of myogenic and angiogenic transcriptional programs in adult zebrafish
A. Palstra, M. Rovira, D. Rizo-Roca, J. R. Torrella +2 more
2014BMC Genomics76 citations Open access
Semantic Scholar
Glucocorticoid-Induced Attenuation of the Inflammatory Response in Zebrafish.
A. Chatzopoulou, J. Heijmans, E. Burgerhout, Nienke Oskam +3 more
2016Endocrinology74 citations Open access
Semantic Scholar
The Role of TLR2 in Infectious Diseases Caused by Mycobacteria: From Cell Biology to Therapeutic Target
Wan-Bin Hu, H. Spaink
2022Biology69 citations Open access
Semantic Scholar
Keeping track of the growing number of biological functions of chitin and its interaction partners in biomedical research
Bjørn E. V. Koch, J. Stougaard, H. Spaink
2015Glycobiology69 citations Open access
Semantic Scholar
Transcriptional and metabolic effects of glucocorticoid receptor α and β signaling in zebrafish.
A. Chatzopoulou, Upasana Roy, A. Meijer, A. Alia +2 more
2015Endocrinology61 citations
Semantic Scholar
Correlative light and electron microscopy imaging of autophagy in a zebrafish infection model
Rohola Hosseini, G. Lamers, Zlatan Hodzic, A. Meijer +2 more
2014Autophagy60 citations Open access
Semantic Scholar
Testing Tuberculosis Drug Efficacy in a Zebrafish High-Throughput Translational Medicine Screen
A. Ordas, R. Raterink, F. Cunningham, H. Jansen +11 more
2014Antimicrobial Agents and Chemotherapy59 citations Open access
Semantic Scholar
In vivo inactivation of glycosidases by conduritol B epoxide and cyclophellitol as revealed by activity‐based protein profiling
Chi-Lin Kuo, W. Kallemeijn, L. Lelieveld, M. Mirzaian +8 more
2019The FEBS Journal56 citations Open access
Semantic Scholar
Hyperinsulinemia induces insulin resistance and immune suppression via Ptpn6/Shp1 in zebrafish.
Rubén Marín-Juez, S. Jong-Raadsen, Shu-Xin Yang, H. Spaink
2014Journal of Endocrinology56 citations Open access
Semantic Scholar
Functional Inhibition of Host Histone Deacetylases (HDACs) Enhances in vitro and in vivo Anti-mycobacterial Activity in Human Macrophages and in Zebrafish
J. D. Moreira, Bjørn E. V. Koch, S. van Veen, K. Walburg +7 more
2020Frontiers in Immunology51 citations Open access
Semantic Scholar
Improving small RNA-seq by using a synthetic spike-in set for size-range quality control together with a set for data normalization
M. Locati, I. Terpstra, W. D. de Leeuw, Mateusz Kuzak +8 more
2015Nucleic Acids Research51 citations Open access
Semantic Scholar
Erratum to: Guidelines for the use and interpretation of assays for monitoring autophagy (3rd edition) (Autophagy, 12, 1, 1-222, 10.1080/15548627.2015.1100356
D. Klionsky, K. Abdelmohsen, A. Abe, J. Abedin +496 more
201650 citations Open access
Semantic Scholar
GLUT2-mediated glucose uptake and availability are required for embryonic brain development in zebrafish
Rubén Marín-Juez, M. Rovira, D. Crespo, M. van der Vaart +2 more
2014Journal of Cerebral Blood Flow and Metabolism50 citations Open access
Semantic Scholar
Phagocytosis of mycobacteria by zebrafish macrophages is dependent on the scavenger receptor Marco, a key control factor of pro-inflammatory signalling.
Erica L Benard, Stefan J. Roobol, H. Spaink, A. Meijer
2014Developmental and Comparative Immunology49 citations
Semantic Scholar
A full-body transcriptome and proteome resource for the European common carp
I. Kolder, S. J. van der Plas-Duivesteijn, G. Tan, G. Wiegertjes +14 more
2016BMC Genomics47 citations Open access
Semantic Scholar
Mother-Specific Signature in the Maternal Transcriptome Composition of Mature, Unfertilized Zebrafish Eggs
Han Rauwerda, Paul F. K. Wackers, Johanna F. B. Pagano, Mark de Jong +6 more
2016PLoS ONE40 citations Open access
Semantic Scholar
Repurposing Tamoxifen as Potential Host-Directed Therapeutic for Tuberculosis
Ralf Boland, M. T. Heemskerk, G. Forn-Cuní, C. J. Korbee +13 more
2022mBio37 citations Open access
Semantic Scholar
Transcriptomic Approaches in the Zebrafish Model for Tuberculosis-Insights Into Host- and Pathogen-specific Determinants of the Innate Immune Response.
Erica L Benard, Julien Rougeot, Peter I. Racz, H. Spaink +1 more
2016Advances in Genetics37 citations
Semantic Scholar
Visualizing Human Hematopoietic Stem Cell Trafficking In Vivo Using a Zebrafish Xenograft Model
F. Staal, H. Spaink, W. Fibbe
2016Stem Cells and Development36 citations
Semantic Scholar
Infection and RNA-seq analysis of a zebrafish tlr2 mutant shows a broad function of this toll-like receptor in transcriptional and metabolic control and defense to Mycobacterium marinum infection
Wan-Bin Hu, Shu-Xin Yang, Yasuhito Shimada, Magnus M. Münch +3 more
2019BMC Genomics35 citations Open access
Semantic Scholar
Common and specific downstream signaling targets controlled by Tlr2 and Tlr5 innate immune signaling in zebrafish
Shu-Xin Yang, Rubén Marín-Juez, A. Meijer, H. Spaink
2015BMC Genomics35 citations Open access
Semantic Scholar
Application of Caenorhabditis elegans (nematode) and Danio rerio embryo (zebrafish) as model systems to screen for developmental and reproductive toxicity of Piperazine compounds.
Peter I. Racz, M. Wildwater, M. Rooseboom, E. Kerkhof +6 more
2017Toxicology in Vitro34 citations Open access
Semantic Scholar
Biological clock function is linked to proactive and reactive personality types
C. Tudorache, H. Slabbekoorn, Y. Robbers, Eline Hin +3 more
2018BMC Biology33 citations Open access
Semantic Scholar
An automated screening method for detecting compounds with goitrogenic activity using transgenic zebrafish embryos
S. Jarque, É. Fetter, Wouter J. Veneman, H. Spaink +3 more
2018PLoS ONE33 citations Open access
Semantic Scholar
RNA sequencing of FACS-sorted immune cell populations from zebrafish infection models to identify cell specific responses to intracellular pathogens.
Julien Rougeot, A. Zakrzewska, Z. Kanwal, H. Jansen +2 more
2014Methods in molecular biology33 citations
Semantic Scholar
Establishment and Optimization of a High Throughput Setup to Study Staphylococcus epidermidis and Mycobacterium marinum Infection as a Model for Drug Discovery
Wouter J. Veneman, Rubén Marín-Juez, Jan de Sonneville, A. Ordas +3 more
2014Journal of Visualized Experiments31 citations Open access
Semantic Scholar
Deep learning image recognition enables efficient genome editing in zebrafish by automated injections
M. L. Cordero-Maldonado, Simon Perathoner, K. van der Kolk, Ralf Boland +5 more
2018bioRxiv30 citations Open access
Semantic Scholar
The ubiquitous catechol moiety elicits siderophore and angucycline production in Streptomyces
Doris A. van Bergeijk, S. Elsayed, Chao Du, Isabel Nuñez Santiago +5 more
2022Communications Chemistry27 citations Open access
Semantic Scholar
Impact of post-hatching maturation on the pharmacokinetics of paracetamol in zebrafish larvae
R. V. van Wijk, Elke H. J. Krekels, V. Kantae, A. Harms +3 more
2019Scientific Reports27 citations Open access
Semantic Scholar
Identifying small RNAs derived from maternal- and somatic-type rRNAs in zebrafish development.
M. Locati, Johanna F. B. Pagano, Farah Abdullah, W. Ensink +8 more
2018Genome27 citations Open access
Semantic Scholar
Collinear Hox-Hox interactions are involved in patterning the vertebrate anteroposterior (A-P) axis
K. Zhu, H. Spaink, A. Durston
2017PLoS ONE25 citations Open access
Semantic Scholar
Efferocytosis and extrusion of leukocytes determine the progression of early mycobacterial pathogenesis
Rohola Hosseini, G. Lamers, Hiwa M. Soltani, A. Meijer +2 more
2016Journal of Cell Science25 citations Open access
Semantic Scholar
UvA-DARE ( Digital Academic Repository ) Linking Maternal and Somatic 5 S rRNA types with Different Sequence-Specific Non-LTR Retrotransposons
M. Locati, Johanna F. B. Pagano, W. Ensink, Marina F. van Olst +10 more
201723 citations
Semantic Scholar
Changes in ovarian gene expression profiles and plasma hormone levels in maturing European eel (Anguilla anguilla); Biomarkers for broodstock selection.
E. Burgerhout, Yuki Minegishi, Sebastiaan A. Brittijn, Danielle L. de Wijze +5 more
2016General and Comparative Endocrinology22 citations Open access
Semantic Scholar
Transcriptome dynamics in early zebrafish embryogenesis determined by high-resolution time course analysis of 180 successive, individual zebrafish embryos
Han Rauwerda, Johanna F. B. Pagano, W. D. de Leeuw, W. Ensink +5 more
2017BMC Genomics21 citations Open access
Semantic Scholar
Spatial and temporal expression patterns of chitinase genes in developing zebrafish embryos.
Bjørn E. V. Koch, J. Stougaard, H. Spaink
2014Gene Expression Patterns20 citations Open access
Semantic Scholar
Leptin deficiency affects glucose homeostasis and results in adiposity in zebrafish.
Junling He, Yi Ding, N. Nowik, Charel Jager +4 more
2021Journal of Endocrinology18 citations Open access
Semantic Scholar
Linking maternal and somatic 5S rRNA types with different sequence-specific non-LTR retrotransposons
M. Locati, Johanna F. B. Pagano, W. Ensink, Marina F. van Olst +9 more
2017RNA: A publication of the RNA Society16 citations Open access
Semantic Scholar

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