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H. Farahani · SciRah

Researcher profile · Semantic Scholar

H. Farahani

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H. Farahani — researcher profile on SciRah

h-index: 14
Works: 28
Citations: 1,943

Most-cited papers

Dynamics of genomic clones in breast cancer patient xenografts at single cell resolution
P. Eirew, A. Steif, J. Khattra, G. Ha +42 more
2014Nature609 citations Open access
Semantic Scholar
Multifocal clonal evolution characterized using circulating tumour DNA in a case of metastatic breast cancer
M. Murtaza, S. Dawson, Katherine L. Pogrebniak, O. Rueda +18 more
2015Nature Communications451 citations Open access
Semantic Scholar
Multifocal endometriotic lesions associated with cancer are clonal and carry a high mutation burden
M. Anglesio, A. Bashashati, Yi-Kan Wang, J. Senz +13 more
2015Journal of Pathology156 citations Open access
Semantic Scholar
A Morphology Focused Diffusion Probabilistic Model for Synthesis of Histopathology Images
Puria Azadi Moghadam, Sanne Van Dalen, K. C. Martin, J. Lennerz +3 more
2022IEEE Workshop/Winter Conference on Applications of Computer Vision134 citations Open access
Semantic Scholar
Synthesis of diagnostic quality cancer pathology images
A. Levine, Jason Peng, D. Farnell, Mitchell Nursey +22 more
2020bioRxiv121 citations Open access
Semantic Scholar
A-to-I editing of microRNAs in the mammalian brain increases during development
Ylva Ekdahl, H. Farahani, M. Behm, J. Lagergren +1 more
2012Genome Research114 citations Open access
Semantic Scholar
Deep learning-based histotype diagnosis of ovarian carcinoma whole-slide pathology images
H. Farahani, J. Boschman, D. Farnell, Amirali Darbandsari +8 more
2022Modern Pathology90 citations Open access
Semantic Scholar
The utility of color normalization for AI‐based diagnosis of hematoxylin and eosin‐stained pathology images
J. Boschman, H. Farahani, Amirali Darbandsari, P. Ahmadvand +11 more
2021Journal of Pathology69 citations
Semantic Scholar
E-scape: interactive visualization of single-cell phylogenetics and cancer evolution
Maia A. Smith, Cydney B. Nielsen, F. Chan, Andrew W. McPherson +5 more
2017Nature Methods46 citations Open access
Semantic Scholar
Sparse Multi-Modal Graph Transformer with Shared-Context Processing for Representation Learning of Giga-pixel Images
Ramin Nakhli, Puria Azadi Moghadam, Haoyang Mi, H. Farahani +3 more
2023Computer Vision and Pattern Recognition41 citations
Semantic Scholar
Learning Bounded Tree-width Bayesian Networks using Integer Linear Programming
P. Parviainen, H. Farahani, J. Lagergren
2014International Conference on Artificial Intelligence and Statistics39 citations
Semantic Scholar
VOLTA: an enVironment-aware cOntrastive ceLl represenTation leArning for histopathology
Ramin Nakhli, K. Rich, Allen W. Zhang, Amirali Darbandsari +10 more
2023Nature Communications19 citations Open access
Semantic Scholar
Deep-learning based classification distinguishes sarcomatoid malignant mesotheliomas from benign spindle cell mesothelial proliferations
Julia R. Naso, A. Levine, H. Farahani, L. Chirieac +8 more
2021Modern Pathology18 citations Open access
Semantic Scholar
clonealign: statistical integration of independent single-cell RNA and DNA sequencing data from human cancers
Kieran R. Campbell, A. Steif, E. Laks, Hans Zahn +13 more
2019Genome Biology15 citations Open access
Semantic Scholar
Classification of Epithelial Ovarian Carcinoma Whole-Slide Pathology Images Using Deep Transfer Learning
Yiping Wang, D. Farnell, H. Farahani, Mitchell Nursey +5 more
2020arXiv.org12 citations
Semantic Scholar
Engineered in-vitro cell line mixtures and robust evaluation of computational methods for clonal decomposition and longitudinal dynamics in cancer
H. Farahani, Camila P. E. de Souza, R. Billings, Damian Boon Siew Yap +6 more
2017Scientific Reports4 citations Open access
Semantic Scholar
CCRL: Contrastive Cell Representation Learning
Ramin Nakhli, Amirali Darbandsari, H. Farahani, A. Bashashati
2022ECCV Workshops3 citations Open access
Semantic Scholar
Learning oncogenetic networks by reducing to MILP
H. Farahani, J. Lagergren
20133 citations
Semantic Scholar
E-scape: Interactive visualization of single cell phylogenetics and spatio-temporal evolution in cancer
Maia A. Smith, Cydney B. Nielsen, F. Chan, Andrew McPherson +5 more
2016bioRxiv2 citations Open access
Semantic Scholar
35 TRIAL IN PROGRESS: DAILY TEMOZOLOMIDE FOR ELDERLY PATIENTS WITH UNMETHYLATED MGMT- PROMOTER NEWLY DIAGNOSED GLIOBLASTOMA (TEMPO)
K. Rich, K. C. Martin, H. Farahani, C. Ma +2 more
2025Neuro-Oncology Advances0 citations Open access
Semantic Scholar
Identification of a novel subtype of endometrial cancer with unfavorable outcome using artificial intelligence-based histopathology image analysis.
Amirali Darbandsari, H. Farahani, P. Abolmaesumi, S. Leung +6 more
2022Journal of Clinical Oncology0 citations Open access
Semantic Scholar
Peer Review #1 of "Genetic links between endometriosis and cancers in women (v0.1)"
Salma Begum, Li Zhao, Y. Wee, Yi-Ning Liu +420 more
20190 citations Open access
Semantic Scholar
clonealign: statistical integration of independent single-cell RNA & DNA-seq from human cancers
Kieran R. Campbell, A. Steif, E. Laks, Hans Zahn +12 more
2018bioRxiv0 citations Open access
Semantic Scholar
Latent tree models for cancer phylogenetics
Emily Hindalong, H. Farahani, Sohrab P. Shah
20150 citations Open access
Semantic Scholar
Computational Modeling of Cancer Progression
H. Farahani
20130 citations
Semantic Scholar
A Structural EM Algorithm for Learning Oncogenetic Networks by Reducing to MILP
H. Farahani, J. Lagergren
20130 citations
Semantic Scholar
A structural EM algorithm for learning hidden variable oncogenetic networks
H. Farahani, J. Lagergren
20130 citations
Semantic Scholar
A Linear Programming Approach for Learning Bounded Treewidth Bayesian Networks
H. Farahani, P. Parviainen, J. Lagergren
20130 citations
Semantic Scholar

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