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C. Chauve · SciRah

Researcher profile · Semantic Scholar

C. Chauve

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C. Chauve — researcher profile on SciRah

h-index: 31
Works: 153
Citations: 3,182

Most-cited papers

“Highly evolvable malaria vectors: the genomes of 16 Anopheles mosquitoes”
D. Neafsey, R. Waterhouse, M. Abai, S. Aganezov +116 more
2014Science567 citations Open access
Semantic Scholar
ecceTERA: comprehensive gene tree-species tree reconciliation using parsimony
E. Jacox, C. Chauve, G. Szöllősi, Yann Ponty +1 more
2016Bioinform.108 citations
Semantic Scholar
ANGES: reconstructing ANcestral GEnomeS maps
B. Jones, Ashok Rajaraman, Eric Tannier, C. Chauve
2012Bioinform.68 citations Open access
Semantic Scholar
MentaLiST – A fast MLST caller for large MLST schemes
P. Feijão, Hua-Ting Yao, D. Fornika, J. Gardy +3 more
2017bioRxiv64 citations Open access
Semantic Scholar
HASLR: Fast Hybrid Assembly of Long Reads
Ehsan Haghshenas, Hossein Asghari, J. Stoye, C. Chauve +1 more
2020bioRxiv59 citations Open access
Semantic Scholar
CoLoRMap: Correcting Long Reads by Mapping short reads
Ehsan Haghshenas, Faraz Hach, S. Sahinalp, C. Chauve
2016Bioinform.57 citations Open access
Semantic Scholar
Space of Gene/Species Trees Reconciliations and Parsimonious Models
Jean-Philippe Doyon, C. Chauve, Sylvie Hamel
2009J. Comput. Biol.53 citations Open access
Semantic Scholar
The Integrated Rapid Infectious Disease Analysis (IRIDA) Platform
Thomas Matthews, F. Bristow, Emma J. Griffiths, A. Petkau +28 more
2018bioRxiv50 citations Open access
Semantic Scholar
Beaver Fever: Whole-Genome Characterization of Waterborne Outbreak and Sporadic Isolates To Study the Zoonotic Transmission of Giardiasis
C. Tsui, Ruth Miller, Miguel I. Uyaguari-Díaz, P. Tang +4 more
2018Msphere50 citations Open access
Semantic Scholar
Evolutionary superscaffolding and chromosome anchoring to improve Anopheles genome assemblies
R. Waterhouse, S. Aganezov, Yoann Anselmetti, Jiyoung Lee +22 more
2020BMC Biology47 citations Open access
Semantic Scholar
DeCoSTAR: Reconstructing the Ancestral Organization of Genes or Genomes Using Reconciled Phylogenies
Wandrille Duchemin, Yoann Anselmetti, M. Patterson, Y. Ponty +5 more
2017Genome Biology and Evolution46 citations Open access
Semantic Scholar
flowLearn: fast and precise identification and quality checking of cell populations in flow cytometry
Markus Lux, R. Brinkman, C. Chauve, A. Laing +3 more
2018Bioinform.42 citations Open access
Semantic Scholar
An Efficient Method for Exploring the Space of Gene Tree/Species Tree Reconciliations in a Probabilistic Framework
Jean-Philippe Doyon, Sylvie Hamel, C. Chauve
2012IEEE/ACM Transactions on Computational Biology & Bioinformatics42 citations Open access
Semantic Scholar
Yeast Ancestral Genome Reconstructions: The Possibilities of Computational Methods II
C. Chauve, H. Gavranović, Aïda Ouangraoua, Eric Tannier
2010J. Comput. Biol.42 citations
Semantic Scholar
ReMixT: clone-specific genomic structure estimation in cancer
Andrew W. McPherson, Andrew Roth, G. Ha, C. Chauve +7 more
2017Genome Biology40 citations Open access
Semantic Scholar
Models and Algorithms for Genome Evolution
C. Chauve, N. El-Mabrouk, Eric Tannier
2013Computational Biology37 citations
Semantic Scholar
Reconstructing the architecture of the ancestral amniote genome
Aïda Ouangraoua, Eric Tannier, C. Chauve
2011Bioinform.36 citations
Semantic Scholar
Alignment-free clustering of UMI tagged DNA molecules
Baraa Orabi, Emre Erhan, B. McConeghy, S. Volik +5 more
2018Bioinform.31 citations
Semantic Scholar
FPSAC: fast phylogenetic scaffolding of ancient contigs
Ashok Rajaraman, Eric Tannier, C. Chauve
2013Bioinform.31 citations Open access
Semantic Scholar
Linearization of ancestral multichromosomal genomes
J. Manuch, M. Patterson, Roland Wittler, C. Chauve +1 more
2012BMC Bioinformatics30 citations Open access
Semantic Scholar
Duplication, Rearrangement and Reconciliation: A Follow-Up 13 Years Later
C. Chauve, N. El-Mabrouk, L. Guéguen, M. Semeria +1 more
2013Models and Algorithms for Genome Evolution28 citations Open access
Semantic Scholar
Minimal Conflicting Sets for the Consecutive Ones Property in Ancestral Genome Reconstruction
C. Chauve, U. Haus, Tamon Stephen, Vivija P. You
2009RECOMB Comparative Genomics Satellite Conference25 citations Open access
Semantic Scholar
Ancestral gene synteny reconstruction improves extant species scaffolding
Yoann Anselmetti, V. Berry, C. Chauve, A. Chateau +2 more
2015BMC Genomics24 citations Open access
Semantic Scholar
Fast and accurate matching of cellular barcodes across short-reads and long-reads of single-cell RNA-seq experiments
Ghazal Ebrahimi, Baraa Orabi, M. Robinson, C. Chauve +2 more
2022bioRxiv21 citations Open access
Semantic Scholar
Polytomy refinement for the correction of dubious duplications in gene trees
Manuel Lafond, C. Chauve, R. Dondi, N. El-Mabrouk
2014Bioinform.20 citations Open access
Semantic Scholar
The Potential of Family-Free Genome Comparison
Marília D. V. Braga, C. Chauve, D. Doerr, K. Jahn +3 more
2013Models and Algorithms for Genome Evolution20 citations
Semantic Scholar
HyAsP, a greedy tool for plasmids identification
Róbert Müller, C. Chauve
2019Bioinform.19 citations
Semantic Scholar
MaxTiC: Fast ranking of a phylogenetic tree by Maximum Time Consistency with lateral gene transfers
C. Chauve, Akbar Rafiey, Adrián A. Davín, C. Scornavacca +5 more
2017bioRxiv18 citations Open access
Semantic Scholar
Mapping ancestral genomes with massive gene loss: A matrix sandwich problem
H. Gavranović, C. Chauve, J. Salse, Eric Tannier
2011Bioinform.17 citations Open access
Semantic Scholar
Genion, an accurate tool to detect gene fusion from long transcriptomics reads
Fatih Karaoglanoglu, C. Chauve, Faraz Hach
2022BMC Genomics16 citations Open access
Semantic Scholar
Evolution of genes neighborhood within reconciled phylogenies: an ensemble approach
C. Chauve, Yann Ponty, J. P. P. Zanetti
2015BMC Bioinformatics16 citations Open access
Semantic Scholar
BRASERO: A Resource for Benchmarking RNA Secondary Structure Comparison Algorithms
J. Allali, C. Saule, C. Chauve, Y. D'Aubenton-Carafa +12 more
2012Adv. Bioinformatics16 citations Open access
Semantic Scholar
Freddie: annotation-independent detection and discovery of transcriptomic alternative splicing isoforms using long-read sequencing
Baraa Orabi, Ning Xie, B. McConeghy, Xue-Sen Dong +2 more
2022Nucleic Acids Research14 citations Open access
Semantic Scholar
Comparative Methods for Reconstructing Ancient Genome Organization.
Yoann Anselmetti, N. Luhmann, S. Bérard, Eric Tannier +1 more
2018Methods in molecular biology13 citations Open access
Semantic Scholar
Phylogenetic signal from rearrangements in 18 Anopheles species by joint scaffolding extant and ancestral genomes
Yoann Anselmetti, Wandrille Duchemin, Eric Tannier, C. Chauve +1 more
2018BMC Genomics13 citations Open access
Semantic Scholar
LRCstats, a tool for evaluating long reads correction methods
Sean La, Ehsan Haghshenas, C. Chauve
2017Bioinform.12 citations Open access
Semantic Scholar
The BRaliBase dent—a tale of benchmark design and interpretation
Benedikt Löwes, C. Chauve, Yann Ponty, R. Giegerich
2016Briefings Bioinform.12 citations Open access
Semantic Scholar
Hypergraph Covering Problems Motivated by Genome Assembly Questions
C. Chauve, M. Patterson, Ashok Rajaraman
2013International Workshop on Combinatorial Algorithms12 citations Open access
Semantic Scholar
Branch-and-bound approach for parsimonious inference of a species tree from a set of gene family trees.
Jean-Philippe Doyon, C. Chauve
2011Advances in Experimental Medicine and Biology12 citations
Semantic Scholar
Exponentially few RNA structures are designable
Hua-Ting Yao, M. Régnier, C. Chauve, Y. Ponty
2019bioRxiv11 citations Open access
Semantic Scholar
Gene Tree Construction and Correction Using SuperTree and Reconciliation
Manuel Lafond, C. Chauve, N. El-Mabrouk, Aïda Ouangraoua
2016IEEE/ACM Transactions on Computational Biology & Bioinformatics11 citations
Semantic Scholar
Hardness results on the gapped consecutive-ones property problem
J. Manuch, M. Patterson, C. Chauve
2009Discrete Applied Mathematics10 citations Open access
Semantic Scholar
The SCJ Small Parsimony Problem for Weighted Gene Adjacencies
N. Luhmann, Manuel Lafond, Annelyse Thévenin, Aïda Ouangraoua +2 more
2016IEEE/ACM Transactions on Computational Biology & Bioinformatics9 citations Open access
Semantic Scholar
Tractability Results for the Consecutive-Ones Property with Multiplicity
C. Chauve, J. Manuch, M. Patterson, Roland Wittler
2011Annual Symposium on Combinatorial Pattern Matching9 citations Open access
Semantic Scholar
An Exact Enumeration of Distance-Hereditary Graphs
C. Chauve, Éric Fusy, Jérémie O. Lumbroso
2016Workshop on Analytic Algorithmics and Combinatorics8 citations Open access
Semantic Scholar
PlasBin-flow: a flow-based MILP algorithm for plasmid contigs binning
Aniket C. Mane, M. Faizrahnemoon, T. Vinař, Broňa Brejová +1 more
2023Bioinform.7 citations Open access
Semantic Scholar
Joint Inference of Genome Structure and Content in Heterogeneous Tumor Samples
Andrew W. McPherson, Andrew Roth, G. Ha, Sohrab P. Shah +2 more
2015Annual International Conference on Research in Computational Molecular Biology7 citations
Semantic Scholar
Ancestral Genome Organization as a Diagnosis Tool for Phylogenomics
Eric Tannier, Adelme Bazin, Adrián A. Davín, L. Guéguen +2 more
20206 citations
Semantic Scholar
A 2-Approximation for the Minimum Duplication Speciation Problem
Aïda Ouangraoua, Krister M. Swenson, C. Chauve
2011J. Comput. Biol.6 citations Open access
Semantic Scholar
Breakpoint Distance and PQ-Trees
Hai-Tao Jiang, Hong Liu, C. Chauve, Bin-Hai Zhu
2010Annual Symposium on Combinatorial Pattern Matching6 citations Open access
Semantic Scholar

Frequent co-authors

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Eric Tannier×15
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Faraz Hach×6
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S. Bérard×6
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Aïda Ouangraoua×6
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Yoann Anselmetti

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