Researcher profile · Semantic Scholar

J. Harshbarger

h-index: 16
Works: 33
Citations: 7,260

Most-cited papers

A promoter-level mammalian expression atlas
A. Forrest, H. Kawaji, M. Rehli, J. Baillie +256 more
2014Nature1,977 citations Open access
Semantic Scholar
An atlas of human long non-coding RNAs with accurate 5′ ends
C. Hon, Jordan A. Ramilowski, J. Harshbarger, N. Bertin +35 more
2017Nature951 citations Open access
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A draft network of ligand–receptor-mediated multicellular signalling in human
Jordan A. Ramilowski, T. Goldberg, J. Harshbarger, Edda Kloppman +7 more
2015Nature Communications842 citations Open access
Semantic Scholar
Gateways to the FANTOM5 promoter level mammalian expression atlas
M. Lizio, J. Harshbarger, H. Shimoji, Jessica Severin +38 more
2015Genome Biology840 citations Open access
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The BioMart community portal: an innovative alternative to large, centralized data repositories
D. Smedley, S. Haider, S. Durinck, Luca Pandini +101 more
2015Nucleic Acids Res.729 citations Open access
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Transcribed enhancers lead waves of coordinated transcription in transitioning mammalian cells
E. Arner, Carsten O. Daub, K. Vitting-Seerup, Robin Andersson +105 more
2015Science588 citations Open access
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An integrated expression atlas of miRNAs and their promoters in human and mouse
Derek de Rie, I. Abugessaisa, T. Alam, E. Arner +66 more
2017Nature Biotechnology492 citations Open access
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Interactive visualization and analysis of large-scale sequencing datasets using ZENBU
Jessica Severin, M. Lizio, J. Harshbarger, H. Kawaji +4 more
2014Nature Biotechnology168 citations
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Functional annotation of human long noncoding RNAs via molecular phenotyping
Jordan A. Ramilowski, Chi-Wai Yip, Saumya Agrawal, Jen-Chien Chang +112 more
2019bioRxiv150 citations Open access
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FANTOM5 CAGE profiles of human and mouse samples
Shuhei Noguchi, T. Arakawa, S. Fukuda, M. Furuno +174 more
2017Scientific Data119 citations Open access
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Update of the FANTOM web resource: high resolution transcriptome of diverse cell types in mammals
M. Lizio, J. Harshbarger, I. Abugessaisa, S. Noguchi +21 more
2016Nucleic Acids Res.97 citations Open access
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FANTOM enters 20th year: expansion of transcriptomic atlases and functional annotation of non-coding RNAs
I. Abugessaisa, Jordan A. Ramilowski, M. Lizio, J. Severin +24 more
2020Nucleic Acids Res.92 citations Open access
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FANTOM5 CAGE profiles of human and mouse reprocessed for GRCh38 and GRCm38 genome assemblies
I. Abugessaisa, Shuhei Noguchi, A. Hasegawa, J. Harshbarger +6 more
2017Scientific Data82 citations Open access
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FANTOM5 transcriptome catalog of cellular states based on Semantic MediaWiki
I. Abugessaisa, H. Shimoji, S. Şahin, A. Kondo +7 more
2016Database J. Biol. Databases Curation71 citations Open access
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DEIVA: a web application for interactive visual analysis of differential gene expression profiles
J. Harshbarger, A. Kratz, Piero Carninci
2017BMC Genomics39 citations Open access
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Corrigendum: A draft network of ligand-receptor-mediated multicellular signalling in human
Jordan A. Ramilowski, T. Goldberg, J. Harshbarger, Edda Kloppmann +7 more
2016Nature Communications19 citations Open access
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Monitoring transcription initiation activities in rat and dog
M. Lizio, A. K. Mukarram, Mizuho Ohno, Shoko Watanabe +12 more
2017Scientific Data7 citations Open access
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Lyme disease in North Carolina.
J. Harshbarger, W. I. Yount, R. Warren
1984North Carolina Medical Journal7 citations
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Transcription start site profiling of 15 anatomical regions of the Macaca mulatta central nervous system
Margherita Francescatto, M. Lizio, I. Philippens, L. Pardo +16 more
2017Scientific Data5 citations Open access
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Human genome meeting 2016
A. K. Srivastava, Y. Wang, R. Huang, C. Skinner +496 more
2016Human Genomics5 citations Open access
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Automated identification of cell-type–specific genes and alternative promoters
Mickaёl Mendez, J. Harshbarger, M. M. Hoffman
2021bioRxiv1 citations Open access
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Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network
Albert S. B. Edge, M. Edinger, Anna Ehrlund, Karl Ekwall +205 more
20220 citations
Semantic Scholar
Author Correction: Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network
Mathys Grapotte, Manu Saraswat, Chloé Bessière, Christophe Menichelli +485 more
2022Nature Communications0 citations Open access
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Corrigendum
Jordan A. Ramilowski, T. Goldberg, J. Harshbarger, Edda Kloppmann +6 more
2018Bulletin of the World Health Organization0 citations Open access
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Author Correction: Transcription start site profiling of 15 anatomical regions of the Macaca mulatta central nervous system
Margherita Francescatto, M. Lizio, I. Philippens, L. Pardo +16 more
2018Scientific Data0 citations Open access
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genomic coordinates of the human CAGE peaks
H. Clevers, A. Edge, M. van de Wetering, M. Detmar +174 more
20170 citations
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Data from: Monitoring transcription initiation activities in rat and dog
M. Lizio, A. K. Mukarram, Mizuho Ohno, Shoko Watanabe +12 more
20170 citations
Semantic Scholar
sample information of the human samples
H. Clevers, A. Edge, M. van de Wetering, M. Detmar +174 more
20170 citations
Semantic Scholar
assay information of the mouse qualitycontrol samples for HeliScopeCAGE
H. Clevers, A. Edge, M. van de Wetering, M. Detmar +174 more
20170 citations
Semantic Scholar
expression table of the human CAGE peaks
H. Clevers, A. Edge, M. van de Wetering, M. Detmar +174 more
20170 citations
Semantic Scholar
genomic coordinates of the mouse CAGE peaks
H. Clevers, A. Edge, M. van de Wetering, M. Detmar +174 more
20170 citations
Semantic Scholar
FANTOM5 web resource for the large-scale genome-wide transcription start site activity profiles of wide-range of mammalian cells
T. Kasukawa, M. Lizio, J. Harshbarger, S. Hisashi +9 more
20160 citations
Semantic Scholar
connectome: v0.1.0
J. Harshbarger
20150 citations
Semantic Scholar

T. Kasukawa

×24

Jessica Severin×22

Y. Hayashizaki×22

M. Itoh×21

I. Abugessaisa×20

T. Lassmann×18

A. Hasegawa×18

E. Arner×13