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S. Gaffney · SciRah

Researcher profile · Semantic Scholar

S. Gaffney

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S. Gaffney — researcher profile on SciRah

h-index: 14
Works: 46
Citations: 1,049

Most-cited papers

Early and multiple origins of metastatic lineages within primary tumors
Zi-Ming Zhao, Bixiao Zhao, Ya-Lai Bai, Atila Iamarino +5 more
2016Proceedings of the National Academy of Sciences of the United States of America159 citations Open access
Semantic Scholar
Whole-exome sequencing and immune profiling of early-stage lung adenocarcinoma with fully annotated clinical follow-up
H. Kadara, Murim Choi, J. Zhang, E. Parra +21 more
2017Annals of Oncology127 citations Open access
Semantic Scholar
Mutation profiles in early-stage lung squamous cell carcinoma with clinical follow-up and correlation with markers of immune function
M. Choi, H. Kadara, J. Zhang, E. Parra +21 more
2016Annals of Oncology101 citations Open access
Semantic Scholar
Effect Sizes of Somatic Mutations in Cancer
Vincent L. Cannataro, S. Gaffney, J. Townsend
2017bioRxiv92 citations Open access
Semantic Scholar
APOBEC-induced mutations and their cancer effect size in head and neck squamous cell carcinoma
Vincent L. Cannataro, S. Gaffney, T. Sasaki, N. Issaeva +6 more
2019Oncogene84 citations Open access
Semantic Scholar
Combined Aurora kinase A (AURKA) and WEE1 inhibition demonstrates synergistic antitumor effect in squamous cell carcinoma of the head and neck
Jong-Woo Lee, Janaki Parameswaran, T. Sandoval-Schaefer, K. Eoh +13 more
2019Clinical Cancer Research66 citations Open access
Semantic Scholar
Molecular Biology and Evolution of Cancer: From Discovery to Action
Jason A. Somarelli, Heather L. Gardner, Vincent L. Cannataro, Ella F Gunady +13 more
2019Molecular biology and evolution61 citations Open access
Semantic Scholar
CDKN2A Copy Number Loss Is an Independent Prognostic Factor in HPV-Negative Head and Neck Squamous Cell Carcinoma
William S. Chen, R. Bindra, Allen Mo, T. Hayman +5 more
2018Frontiers in Oncology54 citations Open access
Semantic Scholar
Whole-exome sequencing and immune profiling of early-stage lung adenocarcinoma with fully annotated clinical follow-up.
H. Kadara, M. Choi, J. Zhang, E. Parra +21 more
2017Annals of Oncology47 citations Open access
Semantic Scholar
Harnessing Case Isolation and Ring Vaccination to Control Ebola
C. Wells, Ya-Min Dan, M. Ndeffo-Mbah, Natasha S. Wenzel +8 more
2015PLoS Neglected Tropical Diseases38 citations Open access
Semantic Scholar
Heterogeneity and mutation in KRAS and associated oncogenes: evaluating the potential for the evolution of resistance to targeting of KRAS G12C
Vincent L. Cannataro, S. Gaffney, Carly Stender, Zi-Ming Zhao +3 more
2018Oncogene37 citations Open access
Semantic Scholar
Transfer RNA methyltransferase gene NSUN2 mRNA expression modifies the effect of T cell activation score on patient survival in head and neck squamous carcinoma
Lin-Geng Lu, S. Gaffney, Vincent L. Cannataro, J. Townsend
2019Oral Oncology32 citations Open access
Semantic Scholar
Environmental and sex-specific molecular signatures of glioma causation
Elizabeth B. Claus, Vincent L. Cannataro, S. Gaffney, J. Townsend
2021Neuro-Oncology23 citations Open access
Semantic Scholar
Mutation profiles in early-stage lung squamous cell carcinoma with clinical follow-up and correlation with markers of immune function.
M. Choi, H. Kadara, J. Zhang, E. P. Cuentas +21 more
2016Annals of Oncology17 citations
Semantic Scholar
Premetastatic shifts of endogenous and exogenous mutational processes support consolidative therapy in EGFR-driven lung adenocarcinoma
J. N. Fisk, A. Mahal, A. Dornburg, S. Gaffney +5 more
2021Cancer Letters13 citations Open access
Semantic Scholar
Number of HIV-1 founder variants is determined by the recency of the source partner infection
C. Villabona-Arenas, M. Hall, K. Lythgoe, S. Gaffney +3 more
2020Science13 citations Open access
Semantic Scholar
Characterizing risk of Ebola transmission based on frequency and type of case–contact exposures
L. Skrip, Mosoka P. Fallah, S. Gaffney, R. Yaari +5 more
2017Philosophical Transactions of the Royal Society B: Biological Sciences13 citations Open access
Semantic Scholar
Clone Phylogenetics Reveals Metastatic Tumor Migrations, Maps, and Models
Antonia Chroni, Sayaka Miura, L. Hamilton, Tracy Vu +6 more
2022Cancers12 citations Open access
Semantic Scholar
The landscape of novel and complementary targets for immunotherapy: an analysis of gene expression in the tumor microenvironment
S. Gaffney, Elizabeth B. Perry, Ping-Min Chen, A. Greenstein +2 more
2019OncoTarget11 citations Open access
Semantic Scholar
Whole-exome sequencing and immune profiling of early-stage lung adenocarcinoma with fully annotated clinical follow-up.
H. Kadara, M. Choi, J. Zhang, E. Parra +21 more
2018Annals of Oncology10 citations Open access
Semantic Scholar
Erratum: Whole-exome sequencing and immune profiling of early-stage lung adenocarcinoma with fully annotated clinical follow-up [Ann Oncol, 28, 1, (2017) (75-82)] DOI: 10.1093/annonc/mdw436
H. Kadara, Murim Choi, J. Zhang, E. Parra +21 more
201710 citations Open access
Semantic Scholar
PathScore: a web tool for identifying altered pathways in cancer data
S. Gaffney, J. Townsend
2016bioRxiv9 citations Open access
Semantic Scholar
APOBEC mutagenesis and selection for NFE2L2 contribute to the origin of lung squamous-cell carcinoma
Vincent L. Cannataro, S. Kudalkar, Krishna Dasari, S. Gaffney +7 more
2022Lung Cancer6 citations Open access
Semantic Scholar
Jot: guiding journal selection with suitability metrics
S. Gaffney, J. Townsend
2022Journal of the Medical Library Association3 citations Open access
Semantic Scholar
GEM-NET: Lessons in Multi-Institution Teamwork Using Collaboration Software
S. Gaffney, O. Ad, S. Smaga, A. Schepartz +1 more
2019ACS Central Science3 citations Open access
Semantic Scholar
CDKN2A copy number loss in HPV- and HPV+ head and neck cancer to indicate poor prognosis: An integrated genomic and clinical TCGA analysis.
William S. Chen, R. Bindra, Allen Mo, T. Hayman +5 more
20173 citations
Semantic Scholar
EPID-26. SEX-SPECIFIC GLIOMA MOLECULAR SIGNATURES
Elizabeth B. Claus, Vincent L. Cannataro, S. Gaffney, J. Townsend
2019Neuro-Oncology2 citations Open access
Semantic Scholar
Correction: Harnessing Case Isolation and Ring Vaccination to Control Ebola
C. Wells, Ya-Min Dan, M. Ndeffo-Mbah, Natasha S. Wenzel +8 more
2015PLoS Neglected Tropical Diseases2 citations Open access
Semantic Scholar
In Response to “De Novo KRAS G12C-Mutant SCLC: A Case Report”
M. Moore, Yu-Yang Zhuo, Jeffrey D. Mandell, S. Gaffney +1 more
2022JTO Clinical and Research Reports1 citations Open access
Semantic Scholar
Chemsearch: collaborative compound libraries with structure-aware browsing
S. Gaffney, S. Smaga, A. Schepartz, J. Townsend
2021Bioinformatics Advances1 citations Open access
Semantic Scholar
The Likelihood of Heterogeneity or Additional Mutation to Compromise Targeting of KRAS G12C
Vincent L. Cannataro, S. Gaffney, Carly Stender, Zi-Ming Zhao +3 more
20171 citations Open access
Semantic Scholar
Abstract 142: Mutation and immune profiles in early-stage lung squamous cell carcinoma
Murim Choi, H. Kadara, Jie-Xin Zhang, E. P. Cuentas +20 more
20161 citations
Semantic Scholar
Somatic evolution of prostate cancer: mutation, selection, and epistasis across disease stages
Moein Rajaei, Alexander Yang, Kira A. Glasmacher, Christopher N. Cross +11 more
2025bioRxiv0 citations
Semantic Scholar
Abstract 1627: Persistence and dynamics of mutation, selection, and epistasis during the somatic evolution of low-risk, high-risk, and metastatic prostate cancer
Moein Rajaei, Alexander Yang, Christopher N. Cross, J. Fisk +10 more
2024Cancer Research0 citations
Semantic Scholar
Abstract 126: Extreme selection constrains ability of EGFR-driven lung adenocarcinoma to diversify in response to erlotinib therapy
J. Fisk, S. Gaffney, K. Politi, S. Gettinger +2 more
2023Cancer Research0 citations
Semantic Scholar
Clinically relevant shifts in endogenous and exogenous mutational processes proximate to metastasis support local consolidative treatment in EGFR-driven non-small cell lung cancer
J. N. Fisk, A. Mahal, A. Dornburg, S. Gaffney +5 more
2021medRxiv0 citations Open access
Semantic Scholar
HIV-1 founder variant multiplicity is determined by the infection stage of the source partner
C. Villabona-Arenas, M. Hall, K. Lythgoe, S. Gaffney +3 more
20190 citations Open access
Semantic Scholar
The likelihood of heterogeneity or additional mutation in KRAS or associated oncogenes to compromise targeting of oncogenic KRAS G12C
Vincent L. Cannataro, S. Gaffney, Carly Stender, Zi-Ming Zhao +3 more
2017bioRxiv0 citations Open access
Semantic Scholar
Effect Sizes of Somatic Mutations in Lung Cancer: Identifying New Targets and Prioritizing Old Ones
Vincent L. Cannataro, K. Brumberg, S. Gaffney, J. Townsend
20170 citations Open access
Semantic Scholar
Supplementary material from Characterizing risk of Ebola transmission based on frequency and type of case–contact exposures
L. Skrip, Mosoka P. Fallah, S. Gaffney, R. Yaari +5 more
20170 citations
Semantic Scholar
Whole-exome sequencing and immune profiling of early-stage lung adenocarcinoma with fully annotated clinical follow-up.
H. Kadara, M. Choi, J. Zhang, E. Parra +21 more
2017Annals of Oncology0 citations Open access
Semantic Scholar
P12.06 Significantly Mutated Genes for Radiation-Associated Meningioma
Elizabeth B. Claus, S. Greenhalgh, S. Gaffney, K. Bilguvar +5 more
20170 citations Open access
Semantic Scholar
MA16.02 Mutational Landscape of TKI Naïve and Resistant EGFR Mutant Lung Adenocarcinomas
K. Hastings, Jungmin Choi, A. Wurtz, Zenta Walther +16 more
20170 citations Open access
Semantic Scholar
Identifying Lung Cancer Pathways Using PathScore
S. Gaffney, J. Townsend
20170 citations Open access
Semantic Scholar
Abstract 89: Whole-exome sequencing and immune profiling of early-stage lung adenocarcinoma
H. Kadara, Murim Choi, Jie-Xin Zhang, E. P. Cuentas +20 more
20160 citations
Semantic Scholar
Markerless deformation capture of hoverfly wings using multiple calibrated cameras
S. Gaffney
20130 citations
Semantic Scholar

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